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Started by upstream project "BIOFORMATS-test-repo" build number 112 originally caused by: Started by upstream project "Trigger" build number 125 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins2903188421436130800.sh + '[' avi = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_17443_merge_ci -v /uod/idr/repos/curated/avi:/data -v /uod/idr-scratch/merge-ci/curated/avi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:01:36,981 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:01:37,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:01:37,066 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:01:37,066 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:01:37,076 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:01:37,077 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:01:37,077 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:01:37,077 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:01:37,077 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 02:01:37,078 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 02:01:37,079 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 502 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-05 02:01:37,090] [main] java.version = 1.8.0_342 [testng] 02:01:37,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:01:37,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:01:37,190 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-05_02-01-37.log] [testng] 02:01:37,193 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-07-05 02:01:37,195] [main] testng.directory = /data [testng] [2024-07-05 02:01:37,195] [main] testng.configDirectory = /config [testng] [2024-07-05 02:01:37,281] [main] testng.multiplier = 1.0 [testng] [2024-07-05 02:01:37,281] [main] testng.in-memory = false [testng] [2024-07-05 02:01:37,281] [main] testng.allow-missing = false [testng] [2024-07-05 02:01:37,281] [main] user.language = en [testng] [2024-07-05 02:01:37,281] [main] user.country = ${user.country} [testng] [2024-07-05 02:01:37,281] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-07-05 02:01:38,793] [main] ---------------------------------------- [testng] [2024-07-05 02:01:38,793] [main] Total files: 40 [testng] [2024-07-05 02:01:38,793] [main] Scan time: 1.511 s (37 ms/file) [testng] [2024-07-05 02:01:38,793] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 38 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-05 02:05:48,400] [pool-1-thread-1] Initializing /data/roger/op9middle40x.lsm movie 4.avi: [testng] 02:05:48,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:05:48,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:48,402 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-05_02-05-48.log] [testng] 02:05:48,402 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44e77a2c - End of configuration. [testng] [2024-07-05 02:05:48,436] [pool-1-thread-12] Initializing /data/kurt/40x_6um_2.avi: [testng] 02:05:48,437 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:05:48,437 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:48,438 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-05_02-05-48.log] [testng] 02:05:48,438 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60834fd1 - End of configuration. [testng] [2024-07-05 02:05:48,497] [pool-1-thread-11] Initializing /data/curtis/mri-stack-ij-old.avi: [testng] 02:05:48,498 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:05:48,498 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:48,499 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-05_02-05-48.log] [testng] 02:05:48,499 |-INFO in ch.qos.logback.core.sift.SiftProcessor@222e695e - End of configuration. [testng] [2024-07-05 02:05:48,517] [pool-1-thread-10] Initializing /data/roger/spheroid1-crop.lsm movie 2.avi: [testng] 02:05:48,517 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:05:48,517 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:48,518 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-05_02-05-48.log] [testng] 02:05:48,518 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b826b81 - End of configuration. [testng] [2024-07-05 02:05:48,595] [pool-1-thread-9] Initializing /data/sample-avis/rgb-odd-width/HyperStack.avi: [testng] 02:05:48,595 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:05:48,595 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:48,596 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-05_02-05-48.log] [testng] 02:05:48,596 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34e6cb9f - End of configuration. [testng] [2024-07-05 02:05:48,603] [pool-1-thread-8] Initializing /data/chris/APZ04_009.avi: [testng] 02:05:48,603 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:05:48,603 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:48,604 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-05_02-05-48.log] [testng] 02:05:48,604 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7fd116f1 - End of configuration. [testng] [2024-07-05 02:05:49,897] [pool-1-thread-7] Initializing /data/qa-7560/Ex9 ALADIN WT KO KI_DIC_ 31_07_2013_M1.avi: [testng] 02:05:49,897 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:05:49,897 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:49,898 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-05_02-05-49.log] [testng] 02:05:49,898 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1fe1eed7 - End of configuration. [testng] [2024-07-05 02:05:50,206] [pool-1-thread-6] Initializing /data/prairie/cornea dc and macs.AVI: [testng] 02:05:50,206 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:05:50,206 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:50,207 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-05_02-05-50.log] [testng] 02:05:50,207 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5fdaaecd - End of configuration. [testng] [2024-07-05 02:05:50,240] [pool-1-thread-5] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_5.avi: [testng] 02:05:50,241 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:05:50,241 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:50,243 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-05_02-05-50.log] [testng] 02:05:50,243 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5975e07a - End of configuration. [testng] [2024-07-05 02:05:50,257] [pool-1-thread-4] Initializing /data/chip_avi/Level002-DB-090.avi: [testng] 02:05:50,257 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:05:50,257 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:50,257 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-05_02-05-50.log] [testng] 02:05:50,258 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d7254df - End of configuration. [testng] [2024-07-05 02:05:50,273] [pool-1-thread-3] Initializing /data/qa-5019/nemo-2_1_.avi: [testng] 02:05:50,273 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:05:50,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:50,274 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-05_02-05-50.log] [testng] 02:05:50,275 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c773970 - End of configuration. [testng] [2024-07-05 02:05:50,344] [pool-1-thread-2] Initializing /data/qa-7450/MVI_3610.AVI: [testng] 02:05:50,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:05:50,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:50,346 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-05_02-05-50.log] [testng] 02:05:50,346 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6adb2dda - End of configuration. [testng] [2024-07-05 02:05:52,376] [pool-1-thread-9] Initializing /data/sample-avis/extra-chunk/HyperStack.avi: [testng] [2024-07-05 02:05:52,385] [pool-1-thread-5] Initializing /data/qa-4232/11051920xdrywithincubatoronthenoff_Subset.avi: [testng] [2024-07-05 02:05:52,409] [pool-1-thread-4] Initializing /data/kurt/63x_6um.avi: [testng] [2024-07-05 02:05:52,476] [pool-1-thread-11] Initializing /data/chip_avi/Level004-WA-116.avi: [testng] [2024-07-05 02:05:52,533] [pool-1-thread-3] Initializing /data/jules/GUV_long15N_10_20mb_debut_25102011_1_BW.avi: [testng] [2024-07-05 02:05:52,570] [pool-1-thread-1] Initializing /data/william/worm.avi: [testng] [2024-07-05 02:05:52,579] [pool-1-thread-2] Initializing /data/roger/op9middle40x.lsm movie.avi: [testng] [2024-07-05 02:05:52,722] [pool-1-thread-6] Initializing /data/roger/op9middle40x.lsm movie 2.avi: [testng] [2024-07-05 02:05:52,888] [pool-1-thread-10] Initializing /data/ascb/TIRF.avi: [testng] [2024-07-05 02:05:53,248] [pool-1-thread-9] Initializing /data/pki/yinghua_USPI2-ASMKT772_111017100001_C10_f1.avi: [testng] [2024-07-05 02:05:53,339] [pool-1-thread-1] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_4.avi: [testng] [2024-07-05 02:05:53,421] [pool-1-thread-12] Initializing /data/qa-11011/M-flow10001.avi: [testng] [2024-07-05 02:05:53,676] [pool-1-thread-11] Initializing /data/jules/GUV_long15N_10_10mb_debut_26102011_4.avi: [testng] [2024-07-05 02:05:55,024] [pool-1-thread-5] Initializing /data/simon/24_bit_problem.avi: [testng] [2024-07-05 02:05:55,077] [pool-1-thread-1] Initializing /data/chip_avi/Level001-ES-083.avi: [testng] [2024-07-05 02:05:55,170] [pool-1-thread-3] Initializing /data/kurt/40x_6um.avi: [testng] [2024-07-05 02:05:55,211] [pool-1-thread-2] Initializing /data/curtis/mri-stack-bf.avi: [testng] [2024-07-05 02:05:55,321] [pool-1-thread-6] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_3.avi: [testng] [2024-07-05 02:05:55,511] [pool-1-thread-1] Initializing /data/chip_avi/Level003-DB-089.avi: [testng] [2024-07-05 02:05:55,523] [pool-1-thread-10] Initializing /data/roger/op9middle40x.lsm movie 3.avi: [testng] [2024-07-05 02:05:55,678] [pool-1-thread-2] Initializing /data/roger/spheroid1-crop.lsm movie.avi: [testng] [2024-07-05 02:05:55,744] [pool-1-thread-4] Initializing /data/jae/20xD_5minfor14h.avi: [testng] [2024-07-05 02:05:55,905] [pool-1-thread-9] Initializing /data/curtis/mri-stack-ij-new.avi: [testng] [2024-07-05 02:05:56,025] [pool-1-thread-6] Initializing /data/qa-7336/2X_63X-DAPI-Emilin2_Filter_Render_Series.avi: [testng] [2024-07-05 02:05:56,195] [pool-1-thread-12] Initializing /data/roger/spheroid1.lsm movie.avi: [testng] [2024-07-05 02:05:56,418] [pool-1-thread-9] Initializing /data/qa-5019/nemo-2_10_20.avi: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 2014, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 4 minutes 38 seconds Finished: SUCCESS