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Started by upstream project "BIOFORMATS-test-repo" build number 112 originally caused by: Started by upstream project "Trigger" build number 125 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins1504638730165916639.sh + '[' ultraview = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_17448_merge_ci -v /uod/idr/repos/curated/ultraview:/data -v /uod/idr-scratch/merge-ci/curated/ultraview:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:06:54,622 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:06:54,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:06:54,734 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:06:54,734 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:06:54,865 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:06:54,870 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:06:54,875 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:06:54,884 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:06:54,885 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 02:06:54,890 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 02:06:54,891 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 664 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-05 02:06:54,936] [main] java.version = 1.8.0_342 [testng] 02:06:54,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:06:54,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:55,007 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-05_02-06-54.log] [testng] 02:06:55,008 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-07-05 02:06:55,011] [main] testng.directory = /data [testng] [2024-07-05 02:06:55,011] [main] testng.configDirectory = /config [testng] [2024-07-05 02:06:55,025] [main] testng.multiplier = 1.0 [testng] [2024-07-05 02:06:55,025] [main] testng.in-memory = false [testng] [2024-07-05 02:06:55,025] [main] testng.allow-missing = false [testng] [2024-07-05 02:06:55,025] [main] user.language = en [testng] [2024-07-05 02:06:55,025] [main] user.country = ${user.country} [testng] [2024-07-05 02:06:55,025] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-07-05 02:06:57,814] [main] ---------------------------------------- [testng] [2024-07-05 02:06:57,814] [main] Total files: 19 [testng] [2024-07-05 02:06:57,814] [main] Scan time: 2.788 s (146 ms/file) [testng] [2024-07-05 02:06:57,814] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-05 02:06:59,212] [pool-1-thread-1] Initializing /data/kate/Neutrophils#18/Neutrophils#18.htm: [testng] 02:06:59,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:06:59,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:59,213 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-05_02-06-59.log] [testng] 02:06:59,214 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62c17b72 - End of configuration. [testng] [2024-07-05 02:06:59,246] [pool-1-thread-12] Initializing /data/chad/DIC/EZRA200820080626102637.HTM: [testng] 02:06:59,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:06:59,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:59,247 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-05_02-06-59.log] [testng] 02:06:59,248 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6664e677 - End of configuration. [testng] [2024-07-05 02:06:59,261] [pool-1-thread-11] Initializing /data/chad/UltraViewExample/works/CHAD200920090331181355.HTM: [testng] 02:06:59,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:06:59,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:59,263 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-05_02-06-59.log] [testng] 02:06:59,263 |-INFO in ch.qos.logback.core.sift.SiftProcessor@302a3f22 - End of configuration. [testng] [2024-07-05 02:06:59,276] [pool-1-thread-10] Initializing /data/kate/GreenRed6ZnoT/GreenRed5ZNoT.htm: [testng] 02:06:59,277 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:06:59,277 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:59,278 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-05_02-06-59.log] [testng] 02:06:59,278 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3deeae8b - End of configuration. [testng] [2024-07-05 02:06:59,303] [pool-1-thread-9] Initializing /data/chad/UltraViewExamples/Works/CHAD200820080724121453.HTM: [testng] 02:06:59,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:06:59,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:59,304 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-05_02-06-59.log] [testng] 02:06:59,304 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c9deba5 - End of configuration. [testng] [2024-07-05 02:06:59,318] [pool-1-thread-8] Initializing /data/kate/GreenRedNoZ3T/GreenRedNoZ5T.htm: [testng] 02:06:59,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:06:59,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:59,319 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-05_02-06-59.log] [testng] 02:06:59,319 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b800d8 - End of configuration. [testng] [2024-07-05 02:06:59,332] [pool-1-thread-7] Initializing /data/chad/UltraViewSamples/series 3/RAJE200820080619090142.HTM: [testng] 02:06:59,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:06:59,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:59,333 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-05_02-06-59.log] [testng] 02:06:59,333 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15d2e00a - End of configuration. [testng] [2024-07-05 02:06:59,350] [pool-1-thread-6] Initializing /data/chad/20080107130850/IREN200820080107130850.HTM: [testng] 02:06:59,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:06:59,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:59,351 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-05_02-06-59.log] [testng] 02:06:59,354 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7aae6594 - End of configuration. [testng] [2024-07-05 02:06:59,376] [pool-1-thread-5] Initializing /data/kate/GreenRed6Z3T/GreenRed5Z5T.htm: [testng] 02:06:59,376 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:06:59,376 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:59,377 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-05_02-06-59.log] [testng] 02:06:59,378 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5abceb2e - End of configuration. [testng] [2024-07-05 02:06:59,394] [pool-1-thread-4] Initializing /data/kate/Neutrophils#18/tiffs/Neutrophils#18.htm: [testng] 02:06:59,394 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:06:59,394 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:59,395 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-05_02-06-59.log] [testng] 02:06:59,396 |-INFO in ch.qos.logback.core.sift.SiftProcessor@320b18fd - End of configuration. [testng] [2024-07-05 02:06:59,428] [pool-1-thread-3] Initializing /data/chad/UltraViewExample/doesNot/CHAD200920090331181253.HTM: [testng] 02:06:59,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:06:59,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:59,430 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-05_02-06-59.log] [testng] 02:06:59,430 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e2c4c0 - End of configuration. [testng] [2024-07-05 02:06:59,444] [pool-1-thread-2] Initializing /data/kate/GreenRedNoZnoT/GreenRedNoZNoT.htm: [testng] 02:06:59,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:06:59,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:59,445 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-05_02-06-59.log] [testng] 02:06:59,446 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ece954 - End of configuration. [testng] [2024-07-05 02:07:01,677] [pool-1-thread-12] Initializing /data/chad/DIC_IREN200820080107120042/IREN200820080107120042.HTM: [testng] [2024-07-05 02:07:01,693] [pool-1-thread-2] Initializing /data/kate/GreenOnlyNoZnoT/GreenOnlyNoZnoT.htm: [testng] [2024-07-05 02:07:01,708] [pool-1-thread-8] Initializing /data/helio/2 copy Cnn g-tubGFP 111221#20/2 copy Cnn g-tubGFP 111221#20.htm: [testng] [2024-07-05 02:07:02,244] [pool-1-thread-10] Initializing /data/chad/UltraViewExamples/Bug/CHAD200820080724120123.HTM: [testng] [2024-07-05 02:07:02,436] [pool-1-thread-12] Initializing /data/chad/UltraViewExamples/DIC_200820080724115245/CHAD200820080724115245.HTM: [testng] [2024-07-05 02:07:02,556] [pool-1-thread-6] Initializing /data/todd/movement-1.htm: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 49 seconds Finished: SUCCESS