Skip to content
[Jenkins]Jenkins
log in

Console Output

Started by upstream project "BIOFORMATS-test-repo" build number 113
originally caused by:
 Started by upstream project "Trigger" build number 126
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins7398713247870194748.sh
+ '[' targa = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_17559_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 01:28:30,590 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 01:28:30,591 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
   [testng] 01:28:30,591 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:28:30,592 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:28:30,593 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 01:28:30,593 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 01:28:30,593 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 01:28:30,593 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:28:30,594 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:28:30,595 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 01:28:30,595 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 01:28:30,595 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 01:28:30,761 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:28:30,761 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:28:30,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:28:30,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:28:30,789 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:28:30,789 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:28:30,789 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:28:30,790 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:28:30,790 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
   [testng] 01:28:30,790 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
   [testng] 01:28:30,790 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 196 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-07-06 01:28:30,799] [main] java.version = 11.0.16
   [testng] 01:28:30,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:28:30,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:28:30,845 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-06_01-28-30.log]
   [testng] 01:28:30,846 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
   [testng] [2024-07-06 01:28:30,849] [main] testng.directory = /data
   [testng] [2024-07-06 01:28:30,849] [main] testng.configDirectory = /config
   [testng] [2024-07-06 01:28:30,858] [main] testng.multiplier = 1.0
   [testng] [2024-07-06 01:28:30,860] [main] testng.in-memory = false
   [testng] [2024-07-06 01:28:30,860] [main] testng.allow-missing = false
   [testng] [2024-07-06 01:28:30,860] [main] user.language = en
   [testng] [2024-07-06 01:28:30,860] [main] user.country = ${user.country}
   [testng] [2024-07-06 01:28:30,860] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-07-06 01:28:31,224] [main] ----------------------------------------
   [testng] [2024-07-06 01:28:31,224] [main] Total files: 21
   [testng] [2024-07-06 01:28:31,224] [main] Scan time: 0.364 s (17 ms/file)
   [testng] [2024-07-06 01:28:31,224] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 21 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-07-06 01:28:32,013] [pool-1-thread-1] Initializing /data/samples/XING_B32.TGA: 
   [testng] 01:28:32,014 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:28:32,014 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:28:32,016 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-06_01-28-32.log]
   [testng] 01:28:32,016 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e6ca5e3 - End of configuration.
   [testng] [2024-07-06 01:28:32,035] [pool-1-thread-12] Initializing /data/samples/FLAG_B32.TGA: 
   [testng] 01:28:32,035 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 01:28:32,035 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:28:32,036 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-06_01-28-32.log]
   [testng] 01:28:32,037 |-INFO in ch.qos.logback.core.sift.SiftProcessor@740d9745 - End of configuration.
   [testng] [2024-07-06 01:28:32,083] [pool-1-thread-11] Initializing /data/samples/XING_T32.TGA: 
   [testng] 01:28:32,084 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 01:28:32,084 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:28:32,084 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-06_01-28-32.log]
   [testng] 01:28:32,085 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d11e515 - End of configuration.
   [testng] [2024-07-06 01:28:32,096] [pool-1-thread-10] Initializing /data/samples/XING_T16.TGA: 
   [testng] 01:28:32,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:28:32,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:28:32,097 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-06_01-28-32.log]
   [testng] 01:28:32,098 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15db29f6 - End of configuration.
   [testng] [2024-07-06 01:28:32,108] [pool-1-thread-9] Initializing /data/samples/FLAG_T16.TGA: 
   [testng] 01:28:32,108 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:28:32,108 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:28:32,109 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-06_01-28-32.log]
   [testng] 01:28:32,109 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66ef8038 - End of configuration.
   [testng] [2024-07-06 01:28:32,119] [pool-1-thread-8] Initializing /data/samples/FLAG_B24.TGA: 
   [testng] 01:28:32,120 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:28:32,120 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:28:32,120 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-06_01-28-32.log]
   [testng] 01:28:32,121 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a93be46 - End of configuration.
   [testng] [2024-07-06 01:28:32,131] [pool-1-thread-7] Initializing /data/samples/UTC16.TGA: 
   [testng] 01:28:32,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:28:32,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:28:32,132 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-06_01-28-32.log]
   [testng] 01:28:32,132 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15fff1c7 - End of configuration.
   [testng] [2024-07-06 01:28:32,144] [pool-1-thread-6] Initializing /data/samples/UTC24.TGA: 
   [testng] 01:28:32,144 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:28:32,144 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:28:32,145 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-06_01-28-32.log]
   [testng] 01:28:32,145 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a044159 - End of configuration.
   [testng] [2024-07-06 01:28:32,157] [pool-1-thread-5] Initializing /data/samples/MARBLES.TGA: 
   [testng] 01:28:32,158 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:28:32,158 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:28:32,159 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-06_01-28-32.log]
   [testng] 01:28:32,159 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16da0d37 - End of configuration.
   [testng] [2024-07-06 01:28:32,177] [pool-1-thread-4] Initializing /data/samples/FLAG_B16.TGA: 
   [testng] 01:28:32,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:28:32,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:28:32,178 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-06_01-28-32.log]
   [testng] 01:28:32,178 |-INFO in ch.qos.logback.core.sift.SiftProcessor@479ad299 - End of configuration.
   [testng] [2024-07-06 01:28:32,187] [pool-1-thread-3] Initializing /data/samples/XING_B16.TGA: 
   [testng] 01:28:32,188 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:28:32,188 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:28:32,188 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-06_01-28-32.log]
   [testng] 01:28:32,189 |-INFO in ch.qos.logback.core.sift.SiftProcessor@284c873e - End of configuration.
   [testng] [2024-07-06 01:28:32,199] [pool-1-thread-2] Initializing /data/samples/UTC32.TGA: 
   [testng] 01:28:32,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:28:32,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:28:32,200 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-06_01-28-32.log]
   [testng] 01:28:32,201 |-INFO in ch.qos.logback.core.sift.SiftProcessor@140fd271 - End of configuration.
   [testng] [2024-07-06 01:28:34,087] [pool-1-thread-4] Initializing /data/samples/XING_B24.TGA: 
   [testng] [2024-07-06 01:28:34,101] [pool-1-thread-6] Initializing /data/samples/UBW8.TGA: 
   [testng] [2024-07-06 01:28:34,110] [pool-1-thread-8] Initializing /data/samples/XING_T24.TGA: 
   [testng] [2024-07-06 01:28:34,123] [pool-1-thread-2] Initializing /data/samples/FLAG_T32.TGA: 
   [testng] [2024-07-06 01:28:34,133] [pool-1-thread-7] Initializing /data/samples/UCM8.TGA: 
   [testng] [2024-07-06 01:28:34,143] [pool-1-thread-3] Initializing /data/samples/CTC24.TGA: 
   [testng] [2024-07-06 01:28:34,152] [pool-1-thread-10] Initializing /data/samples/CTC16.TGA: 
   [testng] [2024-07-06 01:28:34,164] [pool-1-thread-11] Initializing /data/samples/CBW8.TGA: 
   [testng] [2024-07-06 01:28:34,175] [pool-1-thread-1] Initializing /data/samples/CCM8.TGA: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1113, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 7 seconds
Finished: SUCCESS