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Started by upstream project "BIOFORMATS-test-repo" build number 113 originally caused by: Started by upstream project "Trigger" build number 126 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins10343620532106586285.sh + '[' ariol = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_17573_merge_ci -v /uod/idr/repos/curated/ariol:/data -v /uod/idr-scratch/merge-ci/curated/ariol:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:30:28,151 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:30:28,153 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 01:30:28,153 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:30:28,155 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:30:28,155 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:30:28,156 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:30:28,156 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:30:28,156 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:30:28,157 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:30:28,158 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:30:28,158 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:30:28,158 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:30:28,348 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:30:28,348 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:30:28,371 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:30:28,371 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:30:28,376 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:30:28,376 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:30:28,377 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:30:28,377 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:30:28,377 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 01:30:28,378 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 01:30:28,378 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 221 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-06 01:30:28,387] [main] java.version = 11.0.16 [testng] 01:30:28,390 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:30:28,390 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:28,441 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-06_01-30-28.log] [testng] 01:30:28,443 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-07-06 01:30:28,447] [main] testng.directory = /data [testng] [2024-07-06 01:30:28,447] [main] testng.configDirectory = /config [testng] [2024-07-06 01:30:28,457] [main] testng.multiplier = 1.0 [testng] [2024-07-06 01:30:28,459] [main] testng.in-memory = false [testng] [2024-07-06 01:30:28,459] [main] testng.allow-missing = false [testng] [2024-07-06 01:30:28,459] [main] user.language = en [testng] [2024-07-06 01:30:28,459] [main] user.country = ${user.country} [testng] [2024-07-06 01:30:28,459] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-07-06 01:30:29,584] [main] ---------------------------------------- [testng] [2024-07-06 01:30:29,584] [main] Total files: 33 [testng] [2024-07-06 01:30:29,584] [main] Scan time: 1.125 s (34 ms/file) [testng] [2024-07-06 01:30:29,585] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 26 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-06 01:30:32,566] [pool-1-thread-1] Initializing /data/karen/26D1C9F6-07D0-4D5F-BD3F-1B7ECB1CB011.jpg: [testng] 01:30:32,567 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:30:32,567 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:32,569 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-06_01-30-32.log] [testng] 01:30:32,569 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f547ea3 - End of configuration. [testng] [2024-07-06 01:30:32,638] [pool-1-thread-12] Initializing /data/karen/94227E77-1CEA-4531-BAD7-1B9152596BC1.jpg: [testng] 01:30:32,638 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:30:32,638 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:32,641 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-06_01-30-32.log] [testng] 01:30:32,642 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ef6c9e2 - End of configuration. [testng] [2024-07-06 01:30:32,711] [pool-1-thread-11] Initializing /data/karen/AEC8E959-A1A7-4FCA-A755-F3D9DA44C118.jpg: [testng] 01:30:32,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:30:32,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:32,712 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-06_01-30-32.log] [testng] 01:30:32,713 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a06cd05 - End of configuration. [testng] [2024-07-06 01:30:32,807] [pool-1-thread-10] Initializing /data/karen/6FC2A99A-C50C-4DD0-B379-FA5595AFD2D6.jpg: [testng] 01:30:32,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:30:32,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:32,808 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-06_01-30-32.log] [testng] 01:30:32,809 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f7ed12c - End of configuration. [testng] [2024-07-06 01:30:32,881] [pool-1-thread-9] Initializing /data/karen/3AF38F06-D489-4DDA-9806-14A3E12FCE7B.jpg: [testng] 01:30:32,882 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:30:32,882 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:32,882 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-06_01-30-32.log] [testng] 01:30:32,883 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ea6c100 - End of configuration. [testng] [2024-07-06 01:30:33,048] [pool-1-thread-8] Initializing /data/karen/FE241E3F-2DA8-4BA9-99CB-635663EDE04F.jpg: [testng] 01:30:33,048 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:30:33,048 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:33,049 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-06_01-30-33.log] [testng] 01:30:33,049 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68618742 - End of configuration. [testng] [2024-07-06 01:30:33,104] [pool-1-thread-7] Initializing /data/karen/07AEF934-D3B2-4558-AB51-4BD744DF2DFF.jpg: [testng] 01:30:33,105 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:30:33,105 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:33,106 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-06_01-30-33.log] [testng] 01:30:33,106 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3802163 - End of configuration. [testng] [2024-07-06 01:30:33,224] [pool-1-thread-6] Initializing /data/karen/FFB1E060-F4A7-431B-AB93-655CE861D238.jpg: [testng] 01:30:33,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:30:33,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:33,226 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-06_01-30-33.log] [testng] 01:30:33,227 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d8a8eb8 - End of configuration. [testng] [2024-07-06 01:30:33,284] [pool-1-thread-5] Initializing /data/karen/C6492D1B-CEB2-4CBB-B4E8-88B8828E763D.jpg: [testng] 01:30:33,284 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:30:33,284 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:33,285 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-06_01-30-33.log] [testng] 01:30:33,286 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51b32593 - End of configuration. [testng] [2024-07-06 01:30:33,400] [pool-1-thread-4] Initializing /data/karen/04CBE9A7-FA1B-4556-9900-6D869E85FFC7.jpg: [testng] 01:30:33,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:30:33,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:33,402 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-06_01-30-33.log] [testng] 01:30:33,403 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9f082a5 - End of configuration. [testng] [2024-07-06 01:30:33,584] [pool-1-thread-3] Initializing /data/karen/FD96C1D1-ABE6-4478-A673-652AA63435F2.jpg: [testng] 01:30:33,584 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:30:33,584 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:33,585 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-06_01-30-33.log] [testng] 01:30:33,586 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21c4e4af - End of configuration. [testng] [2024-07-06 01:30:33,690] [pool-1-thread-2] Initializing /data/karen/E8E773C3-C86B-4457-9D2E-2DFB91EF1714.jpg: [testng] 01:30:33,691 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:30:33,692 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:33,693 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-06_01-30-33.log] [testng] 01:30:33,694 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35abe58 - End of configuration. [testng] [2024-07-06 01:30:37,913] [pool-1-thread-11] Initializing /data/karen/BB1976B8-C06C-4CFC-8C94-7AEF45E3E191.jpg: [testng] [2024-07-06 01:30:37,996] [pool-1-thread-8] Initializing /data/karen/6F685C73-2CD1-421E-B85B-FC1FA4F3F155.jpg: [testng] [2024-07-06 01:30:38,053] [pool-1-thread-6] Initializing /data/karen/C8026BD0-CBB2-4C73-B69F-9E505B47D46D.jpg: [testng] [2024-07-06 01:30:38,123] [pool-1-thread-7] Initializing /data/karen/612E1340-B118-425D-9B59-FD7860AA2B8F.jpg: [testng] [2024-07-06 01:30:38,262] [pool-1-thread-2] Initializing /data/karen/425C6157-4CFF-434F-8CDC-5D10CE65F168.jpg: [testng] [2024-07-06 01:30:38,418] [pool-1-thread-3] Initializing /data/karen/E1445030-57F3-4E15-8BF5-763E0F691B0C.jpg: [testng] [2024-07-06 01:30:38,487] [pool-1-thread-10] Initializing /data/karen/CBC73B29-94B4-44E8-BFCD-FC7CE4CF8109.jpg: [testng] [2024-07-06 01:30:38,632] [pool-1-thread-12] Initializing /data/karen/0017007C-2559-4778-962F-8C4951E89A35.jpg: [testng] [2024-07-06 01:30:38,898] [pool-1-thread-9] Initializing /data/karen/DFCC500D-A2DA-4166-909B-87EA112049A3.jpg: [testng] [2024-07-06 01:30:38,970] [pool-1-thread-1] Initializing /data/karen/025B2189-8F22-49E7-A23A-93FAC9BABE18.jpg: [testng] [2024-07-06 01:30:39,052] [pool-1-thread-5] Initializing /data/karen/6F44F067-6003-458E-871B-1F9AE1F7C928.jpg: [testng] [2024-07-06 01:30:40,863] [pool-1-thread-4] Initializing /data/karen/76336D87-715F-4F65-B069-3D3C548625D5.jpg: [testng] [2024-07-06 01:30:41,767] [pool-1-thread-8] Initializing /data/karen/9C2E458B-73C5-4D03-84F7-060F83B4D95A.jpg: [testng] [2024-07-06 01:30:42,232] [pool-1-thread-6] Initializing /data/karen/885FB907-C91D-4E8E-87AB-611D8A61402C.jpg: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1378, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 25 seconds Finished: SUCCESS