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Started by upstream project "BIOFORMATS-test-repo" build number 113 originally caused by: Started by upstream project "Trigger" build number 126 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins1790914900394566939.sh + '[' mrw = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_17616_merge_ci -v /uod/idr/repos/curated/mrw:/data -v /uod/idr-scratch/merge-ci/curated/mrw:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 02:02:02,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:02:02,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:02:02,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:02:02,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:02:02,952 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:02:02,953 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:02:02,953 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:02:02,953 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:02:02,953 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@41a0aa7d - End of configuration. [testng] 02:02:02,954 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6574a52c - Registering current configuration as safe fallback point [testng] 02:02:02,954 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6c1a5b54 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 916 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-06 02:02:02,969] [main] java.version = 11.0.16 [testng] 02:02:02,973 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:02:02,973 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:02:03,173 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-06_02-02-03.log] [testng] 02:02:03,174 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-07-06 02:02:03,192] [main] testng.directory = /data [testng] [2024-07-06 02:02:03,192] [main] testng.configDirectory = /config [testng] [2024-07-06 02:02:03,255] [main] testng.multiplier = 1.0 [testng] [2024-07-06 02:02:03,257] [main] testng.in-memory = false [testng] [2024-07-06 02:02:03,257] [main] testng.allow-missing = false [testng] [2024-07-06 02:02:03,257] [main] user.language = en [testng] [2024-07-06 02:02:03,257] [main] user.country = ${user.country} [testng] [2024-07-06 02:02:03,257] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-07-06 02:02:03,777] [main] ---------------------------------------- [testng] [2024-07-06 02:02:03,777] [main] Total files: 19 [testng] [2024-07-06 02:02:03,777] [main] Scan time: 0.519 s (27 ms/file) [testng] [2024-07-06 02:02:03,777] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 19 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-06 02:02:05,390] [pool-1-thread-1] Initializing /data/samples/05-Sep-11_nyc_swiatla_0619.mrw: [testng] 02:02:05,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:02:05,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:02:05,393 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-06_02-02-05.log] [testng] 02:02:05,394 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70a7ddb5 - End of configuration. [testng] [2024-07-06 02:02:05,452] [pool-1-thread-12] Initializing /data/samples/05-Sep-11_nyc_swiatla_0612.mrw: [testng] 02:02:05,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:02:05,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:02:05,455 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-06_02-02-05.log] [testng] 02:02:05,456 |-INFO in ch.qos.logback.core.sift.SiftProcessor@752aa8b - End of configuration. [testng] [2024-07-06 02:02:05,532] [pool-1-thread-11] Initializing /data/samples/05-Aug-17_bokeh_0214_400.mrw: [testng] 02:02:05,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:02:05,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:02:05,533 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-06_02-02-05.log] [testng] 02:02:05,534 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65778cc1 - End of configuration. [testng] [2024-07-06 02:02:05,565] [pool-1-thread-10] Initializing /data/samples/1600R PICT0005.MRW: [testng] 02:02:05,566 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:02:05,566 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:02:05,568 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-06_02-02-05.log] [testng] 02:02:05,568 |-INFO in ch.qos.logback.core.sift.SiftProcessor@408b8b94 - End of configuration. [testng] [2024-07-06 02:02:05,594] [pool-1-thread-9] Initializing /data/samples/05-Sep-10_nyc_swiatla_0584.mrw: [testng] 02:02:05,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:02:05,595 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:02:05,595 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-06_02-02-05.log] [testng] 02:02:05,596 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42db60c3 - End of configuration. [testng] [2024-07-06 02:02:05,616] [pool-1-thread-8] Initializing /data/samples/05-Sep-07_nyc_0531.mrw: [testng] 02:02:05,617 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:02:05,617 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:02:05,617 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-06_02-02-05.log] [testng] 02:02:05,618 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3639cf74 - End of configuration. [testng] [2024-07-06 02:02:05,661] [pool-1-thread-7] Initializing /data/samples/05-Sep-22_statua_0800.mrw: [testng] 02:02:05,662 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:02:05,662 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:02:05,663 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-06_02-02-05.log] [testng] 02:02:05,663 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66c07dd9 - End of configuration. [testng] [2024-07-06 02:02:05,698] [pool-1-thread-6] Initializing /data/samples/800R PICT0010.MRW: [testng] 02:02:05,699 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:02:05,699 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:02:05,700 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-06_02-02-05.log] [testng] 02:02:05,701 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3024f2d7 - End of configuration. [testng] [2024-07-06 02:02:05,737] [pool-1-thread-5] Initializing /data/samples/400R PICT0003.MRW: [testng] 02:02:05,737 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:02:05,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:02:05,738 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-06_02-02-05.log] [testng] 02:02:05,739 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26fbf597 - End of configuration. [testng] [2024-07-06 02:02:05,771] [pool-1-thread-4] Initializing /data/samples/05-Aug-17_bokeh_0215_400.mrw: [testng] 02:02:05,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:02:05,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:02:05,773 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-06_02-02-05.log] [testng] 02:02:05,773 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c301d30 - End of configuration. [testng] [2024-07-06 02:02:05,840] [pool-1-thread-3] Initializing /data/samples/100R PICT0001.MRW: [testng] 02:02:05,840 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:02:05,840 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:02:05,841 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-06_02-02-05.log] [testng] 02:02:05,842 |-INFO in ch.qos.logback.core.sift.SiftProcessor@609c2ab2 - End of configuration. [testng] [2024-07-06 02:02:05,864] [pool-1-thread-2] Initializing /data/samples/200R PICT0002.MRW: [testng] 02:02:05,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:02:05,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:02:05,865 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-06_02-02-05.log] [testng] 02:02:05,865 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6bfbaf45 - End of configuration. [testng] [2024-07-06 02:02:13,555] [pool-1-thread-1] Initializing /data/samples/3200R PICT0006.MRW: [testng] [2024-07-06 02:02:13,570] [pool-1-thread-3] Initializing /data/samples/05-Sep-14_sigma_0698.mrw: [testng] [2024-07-06 02:02:13,584] [pool-1-thread-4] Initializing /data/samples/05-Aug-17_manhatan_0321.mrw: [testng] [2024-07-06 02:02:13,604] [pool-1-thread-11] Initializing /data/samples/05-Sep-22_statua_0837.mrw: [testng] [2024-07-06 02:02:13,637] [pool-1-thread-12] Initializing /data/samples/05-Sep-22_statua_0818.mrw: [testng] [2024-07-06 02:02:13,760] [pool-1-thread-9] Initializing /data/samples/05-Sep-03_duperele_0472.mrw: [testng] [2024-07-06 02:02:13,775] [pool-1-thread-10] Initializing /data/samples/05-Aug-21_duperele_0353.mrw: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1007, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 26 seconds Finished: SUCCESS