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Started by upstream project "BIOFORMATS-test-repo" build number 11 originally caused by: Started by upstream project "Trigger" build number 14 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins5708048018063566003.sh + '[' imagepro = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_1768_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:36:04,519 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:36:04,521 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 02:36:04,521 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:36:04,523 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:36:04,523 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:36:04,523 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:36:04,524 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:36:04,524 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:36:04,525 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:36:04,525 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:36:04,525 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:36:04,525 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:36:04,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:36:04,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:36:04,848 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:36:04,848 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:36:04,884 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:36:04,885 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:36:04,885 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:36:04,887 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:36:04,887 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 02:36:04,889 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 02:36:04,889 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 364 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-03-25 02:36:04,907] [main] java.version = 1.8.0_342 [testng] 02:36:04,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:36:04,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:36:04,966 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-25_02-36-04.log] [testng] 02:36:04,970 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-03-25 02:36:04,975] [main] testng.directory = /data [testng] [2024-03-25 02:36:04,975] [main] testng.configDirectory = /config [testng] [2024-03-25 02:36:05,002] [main] testng.multiplier = 1.0 [testng] [2024-03-25 02:36:05,003] [main] testng.in-memory = false [testng] [2024-03-25 02:36:05,003] [main] testng.allow-missing = false [testng] [2024-03-25 02:36:05,003] [main] user.language = fr [testng] [2024-03-25 02:36:05,003] [main] user.country = FR [testng] [2024-03-25 02:36:05,003] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-03-25 02:36:08,058] [main] ---------------------------------------- [testng] [2024-03-25 02:36:08,058] [main] Total files: 22 [testng] [2024-03-25 02:36:08,058] [main] Scan time: 3.055 s (138 ms/file) [testng] [2024-03-25 02:36:08,058] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-03-25 02:36:17,464] [pool-1-thread-1] Initializing /data/converted/clown8c.seq: [testng] 02:36:17,464 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:36:17,464 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:36:17,465 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-25_02-36-17.log] [testng] 02:36:17,465 |-INFO in ch.qos.logback.core.sift.SiftProcessor@973bcb9 - End of configuration. [testng] [2024-03-25 02:36:17,582] [pool-1-thread-12] Initializing /data/converted/NESb_C2_TP7.seq: [testng] 02:36:17,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:36:17,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:36:17,583 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-25_02-36-17.log] [testng] 02:36:17,583 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62a25055 - End of configuration. [testng] [2024-03-25 02:36:17,693] [pool-1-thread-11] Initializing /data/converted/mitosis-test.tif: [testng] 02:36:17,694 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:36:17,694 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:36:17,694 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-25_02-36-17.log] [testng] 02:36:17,695 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71647c70 - End of configuration. [testng] [2024-03-25 02:36:18,020] [pool-1-thread-10] Initializing /data/converted/clown.seq: [testng] 02:36:18,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:36:18,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:36:18,021 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-25_02-36-18.log] [testng] 02:36:18,021 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cbca690 - End of configuration. [testng] [2024-03-25 02:36:18,135] [pool-1-thread-9] Initializing /data/alex/AFAset0003.ips: [testng] 02:36:18,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:36:18,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:36:18,137 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-25_02-36-18.log] [testng] 02:36:18,137 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75215b23 - End of configuration. [testng] [2024-03-25 02:36:18,256] [pool-1-thread-8] Initializing /data/converted/NESb_C2_TP7.tiff: [testng] 02:36:18,256 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:36:18,256 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:36:18,257 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-25_02-36-18.log] [testng] 02:36:18,257 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70bcd06e - End of configuration. [testng] [2024-03-25 02:36:18,552] [pool-1-thread-7] Initializing /data/samples/PROBE.TIF: [testng] 02:36:18,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:36:18,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:36:18,553 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-25_02-36-18.log] [testng] 02:36:18,553 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a1a74bf - End of configuration. [testng] [2024-03-25 02:36:18,674] [pool-1-thread-6] Initializing /data/converted/dub01.ipw: [testng] 02:36:18,674 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:36:18,674 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:36:18,675 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-25_02-36-18.log] [testng] 02:36:18,675 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63044bd - End of configuration. [testng] [2024-03-25 02:36:18,811] [pool-1-thread-5] Initializing /data/converted/NESb_C2_TP7.ipw: [testng] 02:36:18,811 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:36:18,811 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:36:18,812 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-25_02-36-18.log] [testng] 02:36:18,813 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1807f894 - End of configuration. [testng] [2024-03-25 02:36:18,941] [pool-1-thread-4] Initializing /data/xiuwen/head2.seq: [testng] 02:36:18,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:36:18,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:36:18,942 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-25_02-36-18.log] [testng] 02:36:18,942 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f181f7 - End of configuration. [testng] [2024-03-25 02:36:19,149] [pool-1-thread-3] Initializing /data/converted/clown8c.ipw: [testng] 02:36:19,149 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:36:19,149 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:36:19,150 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-25_02-36-19.log] [testng] 02:36:19,150 |-INFO in ch.qos.logback.core.sift.SiftProcessor@163312f6 - End of configuration. [testng] [2024-03-25 02:36:19,252] [pool-1-thread-2] Initializing /data/converted/dub01.seq: [testng] 02:36:19,253 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:36:19,253 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:36:19,253 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-25_02-36-19.log] [testng] 02:36:19,254 |-INFO in ch.qos.logback.core.sift.SiftProcessor@214593ca - End of configuration. [testng] [2024-03-25 02:36:22,022] [pool-1-thread-3] Initializing /data/converted/dub01.pic: [testng] [2024-03-25 02:36:22,159] [pool-1-thread-10] Initializing /data/converted/clown.ipw: [testng] [2024-03-25 02:36:22,298] [pool-1-thread-1] Initializing /data/samples/HEART.SEQ: [testng] [2024-03-25 02:36:22,451] [pool-1-thread-7] Initializing /data/converted/mitosis-test.ipw: [testng] [2024-03-25 02:36:22,609] [pool-1-thread-2] Initializing /data/converted/clown8c.tif: [testng] [2024-03-25 02:36:22,896] [pool-1-thread-6] Initializing /data/samples/TISSUE.TIF: [testng] [2024-03-25 02:36:23,301] [pool-1-thread-12] Initializing /data/converted/clown.tif: [testng] [2024-03-25 02:36:23,517] [pool-1-thread-5] Initializing /data/samples/FLDUAL.TIF: [testng] [2024-03-25 02:36:23,894] [pool-1-thread-11] Initializing /data/converted/mitosis-test.seq: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 8 seconds Finished: SUCCESS