![[Jenkins]](/jenkins/static/f5fa13f0/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 114 originally caused by: Started by upstream project "Trigger" build number 127 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins2872803898320431842.sh + '[' pcx = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_17686_merge_ci -v /uod/idr/repos/curated/pcx:/data -v /uod/idr-scratch/merge-ci/curated/pcx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:20:47,994 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:20:47,996 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service. [testng] 01:20:47,996 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:20:47,997 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:20:47,997 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:20:47,997 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:20:47,998 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:20:47,998 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:20:47,998 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:20:47,999 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:20:47,999 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:20:47,999 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:20:48,163 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:20:48,163 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:20:48,185 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:20:48,185 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:20:48,190 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:20:48,191 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:20:48,191 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:20:48,191 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:20:48,191 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration. [testng] 01:20:48,192 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point [testng] 01:20:48,192 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 194 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-07 01:20:48,201] [main] java.version = 17.0.2 [testng] 01:20:48,204 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:20:48,204 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:48,244 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-07_01-20-48.log] [testng] 01:20:48,245 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-07-07 01:20:48,247] [main] testng.directory = /data [testng] [2024-07-07 01:20:48,247] [main] testng.configDirectory = /config [testng] [2024-07-07 01:20:48,255] [main] testng.multiplier = 1.0 [testng] [2024-07-07 01:20:48,256] [main] testng.in-memory = false [testng] [2024-07-07 01:20:48,256] [main] testng.allow-missing = false [testng] [2024-07-07 01:20:48,256] [main] user.language = en [testng] [2024-07-07 01:20:48,256] [main] user.country = ${user.country} [testng] [2024-07-07 01:20:48,256] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-07-07 01:20:48,669] [main] ---------------------------------------- [testng] [2024-07-07 01:20:48,669] [main] Total files: 36 [testng] [2024-07-07 01:20:48,669] [main] Scan time: 0.412 s (11 ms/file) [testng] [2024-07-07 01:20:48,669] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 35 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-07 01:20:49,765] [pool-1-thread-1] Initializing /data/generated/mri-stack25.pcx: [testng] 01:20:49,765 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:20:49,765 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:49,766 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-07_01-20-49.log] [testng] 01:20:49,766 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d31c8b - End of configuration. [testng] [2024-07-07 01:20:49,822] [pool-1-thread-12] Initializing /data/generated/mri-stack24.pcx: [testng] 01:20:49,823 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:20:49,823 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:49,824 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-07_01-20-49.log] [testng] 01:20:49,824 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b600be1 - End of configuration. [testng] [2024-07-07 01:20:49,835] [pool-1-thread-11] Initializing /data/generated/mri-stack17.pcx: [testng] 01:20:49,836 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:20:49,836 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:49,837 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-07_01-20-49.log] [testng] 01:20:49,838 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11bee2d3 - End of configuration. [testng] [2024-07-07 01:20:49,843] [pool-1-thread-10] Initializing /data/generated/mri-stack16.pcx: [testng] 01:20:49,844 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:20:49,844 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:49,844 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-07_01-20-49.log] [testng] 01:20:49,845 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f28da64 - End of configuration. [testng] [2024-07-07 01:20:49,852] [pool-1-thread-9] Initializing /data/generated/mri-stack20.pcx: [testng] 01:20:49,852 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:20:49,852 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:49,853 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-07_01-20-49.log] [testng] 01:20:49,853 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46ab95c5 - End of configuration. [testng] [2024-07-07 01:20:49,860] [pool-1-thread-8] Initializing /data/josh/Screenshots/biorad color off.pcx: [testng] 01:20:49,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:20:49,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:49,861 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-07_01-20-49.log] [testng] 01:20:49,861 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71aebde2 - End of configuration. [testng] [2024-07-07 01:20:49,869] [pool-1-thread-7] Initializing /data/generated/mri-stack6.pcx: [testng] 01:20:49,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:20:49,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:49,870 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-07_01-20-49.log] [testng] 01:20:49,870 |-INFO in ch.qos.logback.core.sift.SiftProcessor@346d6747 - End of configuration. [testng] [2024-07-07 01:20:49,875] [pool-1-thread-6] Initializing /data/josh/Screenshots/Metamorph image-stack.pcx: [testng] 01:20:49,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:20:49,876 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:49,876 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-07_01-20-49.log] [testng] 01:20:49,877 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a626cee - End of configuration. [testng] [2024-07-07 01:20:49,887] [pool-1-thread-5] Initializing /data/josh/Screenshots/deltavision.pcx: [testng] 01:20:49,887 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:20:49,887 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:49,888 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-07_01-20-49.log] [testng] 01:20:49,888 |-INFO in ch.qos.logback.core.sift.SiftProcessor@705c8ed6 - End of configuration. [testng] [2024-07-07 01:20:49,896] [pool-1-thread-4] Initializing /data/josh/Screenshots/fv1000color.pcx: [testng] 01:20:49,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:20:49,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:49,897 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-07_01-20-49.log] [testng] 01:20:49,897 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d3bd1f5 - End of configuration. [testng] [2024-07-07 01:20:49,906] [pool-1-thread-3] Initializing /data/generated/mri-stack12.pcx: [testng] 01:20:49,906 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:20:49,906 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:49,907 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-07_01-20-49.log] [testng] 01:20:49,907 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d51cb2e - End of configuration. [testng] [2024-07-07 01:20:49,914] [pool-1-thread-2] Initializing /data/generated/mri-stack23.pcx: [testng] 01:20:49,914 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:20:49,914 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:49,915 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-07_01-20-49.log] [testng] 01:20:49,915 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6afa9ab1 - End of configuration. [testng] [2024-07-07 01:20:52,229] [pool-1-thread-9] Initializing /data/generated/mri-stack11.pcx: [testng] [2024-07-07 01:20:52,234] [pool-1-thread-3] Initializing /data/generated/mri-stack7.pcx: [testng] [2024-07-07 01:20:52,238] [pool-1-thread-7] Initializing /data/generated/mri-stack4.pcx: [testng] [2024-07-07 01:20:52,243] [pool-1-thread-11] Initializing /data/generated/mri-stack3.pcx: [testng] [2024-07-07 01:20:52,246] [pool-1-thread-1] Initializing /data/generated/mri-stack19.pcx: [testng] [2024-07-07 01:20:52,249] [pool-1-thread-2] Initializing /data/generated/mri-stack2.pcx: [testng] [2024-07-07 01:20:52,254] [pool-1-thread-12] Initializing /data/generated/mri-stack1.pcx: [testng] [2024-07-07 01:20:52,259] [pool-1-thread-10] Initializing /data/generated/mri-stack15.pcx: [testng] [2024-07-07 01:20:52,262] [pool-1-thread-4] Initializing /data/generated/mri-stack14.pcx: [testng] [2024-07-07 01:20:52,266] [pool-1-thread-8] Initializing /data/generated/mri-stack26.pcx: [testng] [2024-07-07 01:20:52,271] [pool-1-thread-5] Initializing /data/generated/mri-stack10.pcx: [testng] [2024-07-07 01:20:52,276] [pool-1-thread-6] Initializing /data/josh/Screenshots/slidebooksamezposition.pcx: [testng] [2024-07-07 01:20:52,485] [pool-1-thread-2] Initializing /data/generated/mri-stack0.pcx: [testng] [2024-07-07 01:20:52,488] [pool-1-thread-1] Initializing /data/generated/mri-stack18.pcx: [testng] [2024-07-07 01:20:52,491] [pool-1-thread-12] Initializing /data/josh/Screenshots/leica-lif.pcx: [testng] [2024-07-07 01:20:52,531] [pool-1-thread-11] Initializing /data/generated/mri-stack8.pcx: [testng] [2024-07-07 01:20:52,534] [pool-1-thread-3] Initializing /data/generated/mri-stack9.pcx: [testng] [2024-07-07 01:20:52,537] [pool-1-thread-5] Initializing /data/josh/Screenshots/epscolor.pcx: [testng] [2024-07-07 01:20:52,586] [pool-1-thread-9] Initializing /data/generated/mri-stack5.pcx: [testng] [2024-07-07 01:20:52,588] [pool-1-thread-10] Initializing /data/josh/Screenshots/nd2 color.pcx: [testng] [2024-07-07 01:20:52,594] [pool-1-thread-4] Initializing /data/generated/mri-stack13.pcx: [testng] [2024-07-07 01:20:52,599] [pool-1-thread-7] Initializing /data/generated/mri-stack22.pcx: [testng] [2024-07-07 01:20:52,603] [pool-1-thread-8] Initializing /data/generated/mri-stack21.pcx: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1855, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 7 seconds Finished: SUCCESS