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Started by upstream project "BIOFORMATS-test-repo" build number 114 originally caused by: Started by upstream project "Trigger" build number 127 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins15317049902415126491.sh + '[' fei = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_17713_merge_ci -v /uod/idr/repos/curated/fei:/data -v /uod/idr-scratch/merge-ci/curated/fei:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:24:42,517 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:24:42,577 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:24:42,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:24:42,608 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:24:42,621 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:24:42,622 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:24:42,622 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:24:42,623 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:24:42,624 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5e600dd5 - End of configuration. [testng] 01:24:42,626 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@a38c7fe - Registering current configuration as safe fallback point [testng] 01:24:42,627 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6fdbe764 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 539 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-07 01:24:42,656] [main] java.version = 17.0.2 [testng] 01:24:42,664 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:24:42,665 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:42,777 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-07_01-24-42.log] [testng] 01:24:42,781 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-07-07 01:24:42,789] [main] testng.directory = /data [testng] [2024-07-07 01:24:42,789] [main] testng.configDirectory = /config [testng] [2024-07-07 01:24:42,814] [main] testng.multiplier = 1.0 [testng] [2024-07-07 01:24:42,816] [main] testng.in-memory = false [testng] [2024-07-07 01:24:42,816] [main] testng.allow-missing = false [testng] [2024-07-07 01:24:42,816] [main] user.language = en [testng] [2024-07-07 01:24:42,816] [main] user.country = ${user.country} [testng] [2024-07-07 01:24:42,816] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-07-07 01:24:44,160] [main] ---------------------------------------- [testng] [2024-07-07 01:24:44,160] [main] Total files: 21 [testng] [2024-07-07 01:24:44,160] [main] Scan time: 1.343 s (63 ms/file) [testng] [2024-07-07 01:24:44,160] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-07 01:24:45,783] [pool-1-thread-1] Initializing /data/venu/VENU01.IMG: [testng] 01:24:45,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:24:45,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:45,785 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-07_01-24-45.log] [testng] 01:24:45,785 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c3921b - End of configuration. [testng] [2024-07-07 01:24:45,808] [pool-1-thread-12] Initializing /data/venu/VENU_Eight.TIF: [testng] 01:24:45,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:24:45,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:45,809 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-07_01-24-45.log] [testng] 01:24:45,810 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f3127b7 - End of configuration. [testng] [2024-07-07 01:24:45,849] [pool-1-thread-11] Initializing /data/venu/VENU02.IMG: [testng] 01:24:45,850 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:24:45,850 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:45,851 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-07_01-24-45.log] [testng] 01:24:45,851 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71b5d6bf - End of configuration. [testng] [2024-07-07 01:24:45,870] [pool-1-thread-10] Initializing /data/qa-10514/TITAN_FEI_TIFF_Test_Image.tif: [testng] 01:24:45,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:24:45,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:45,871 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-07_01-24-45.log] [testng] 01:24:45,872 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6bfcb055 - End of configuration. [testng] [2024-07-07 01:24:45,911] [pool-1-thread-9] Initializing /data/venu/VENU03.IMG: [testng] 01:24:45,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:24:45,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:45,912 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-07_01-24-45.log] [testng] 01:24:45,913 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65d8b8f2 - End of configuration. [testng] [2024-07-07 01:24:45,931] [pool-1-thread-8] Initializing /data/venu/VENU.TIF: [testng] 01:24:45,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:24:45,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:45,932 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-07_01-24-45.log] [testng] 01:24:45,933 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fea15b4 - End of configuration. [testng] [2024-07-07 01:24:45,963] [pool-1-thread-7] Initializing /data/venu/VENU_Six.TIF: [testng] 01:24:45,964 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:24:45,964 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:45,965 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-07_01-24-45.log] [testng] 01:24:45,965 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5347ded2 - End of configuration. [testng] [2024-07-07 01:24:45,996] [pool-1-thread-6] Initializing /data/venu/VENU02.TIF: [testng] 01:24:45,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:24:45,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:45,997 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-07_01-24-45.log] [testng] 01:24:45,998 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f8c737a - End of configuration. [testng] [2024-07-07 01:24:46,045] [pool-1-thread-5] Initializing /data/steffen/Batman_008.tif: [testng] 01:24:46,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:24:46,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:46,046 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-07_01-24-46.log] [testng] 01:24:46,047 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3093c1e0 - End of configuration. [testng] [2024-07-07 01:24:46,080] [pool-1-thread-4] Initializing /data/venu/VENU03.TIF: [testng] 01:24:46,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:24:46,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:46,081 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-07_01-24-46.log] [testng] 01:24:46,082 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34b425fd - End of configuration. [testng] [2024-07-07 01:24:46,145] [pool-1-thread-3] Initializing /data/venu/VENU_Seven.TIF: [testng] 01:24:46,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:24:46,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:46,148 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-07_01-24-46.log] [testng] 01:24:46,148 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29708926 - End of configuration. [testng] [2024-07-07 01:24:46,199] [pool-1-thread-2] Initializing /data/venu/VENU01.TIF: [testng] 01:24:46,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:24:46,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:46,200 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-07_01-24-46.log] [testng] 01:24:46,201 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ef62e20 - End of configuration. [testng] [2024-07-07 01:24:48,771] [pool-1-thread-10] Initializing /data/antoine/Tile_001-002-000_0-000.tif: [testng] [2024-07-07 01:24:48,813] [pool-1-thread-11] Initializing /data/peter/ZC_PTCS_ED_1000x_002.tif: [testng] [2024-07-07 01:24:48,859] [pool-1-thread-9] Initializing /data/qa-4264/08.51.17 CCD Acquire-Acquire CCD Image Display-Acquire CCD -0.tif: [testng] [2024-07-07 01:24:48,913] [pool-1-thread-4] Initializing /data/venu/VENU_Four.TIF: [testng] [2024-07-07 01:24:48,944] [pool-1-thread-2] Initializing /data/venu/VENU_Five.TIF: [testng] [2024-07-07 01:24:48,971] [pool-1-thread-6] Initializing /data/qa-11061/Tile_020-009-000_0.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 12 seconds Finished: SUCCESS