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Started by upstream project "BIOFORMATS-test-repo" build number 114
originally caused by:
 Started by upstream project "Trigger" build number 127
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins4798333681166928874.sh
+ '[' minc = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_17757_merge_ci -v /uod/idr/repos/curated/minc:/data -v /uod/idr-scratch/merge-ci/curated/minc:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 01:42:25,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:42:25,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:42:25,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:42:25,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:42:25,229 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:42:25,229 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:42:25,229 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:42:25,229 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:42:25,230 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5e600dd5 - End of configuration.
   [testng] 01:42:25,240 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@a38c7fe - Registering current configuration as safe fallback point
   [testng] 01:42:25,240 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6fdbe764 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 477 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-07-07 01:42:25,260] [main] java.version = 17.0.2
   [testng] 01:42:25,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:42:25,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:42:25,397 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-07_01-42-25.log]
   [testng] 01:42:25,398 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
   [testng] [2024-07-07 01:42:25,421] [main] testng.directory = /data
   [testng] [2024-07-07 01:42:25,421] [main] testng.configDirectory = /config
   [testng] [2024-07-07 01:42:25,480] [main] testng.multiplier = 1.0
   [testng] [2024-07-07 01:42:25,481] [main] testng.in-memory = false
   [testng] [2024-07-07 01:42:25,481] [main] testng.allow-missing = false
   [testng] [2024-07-07 01:42:25,481] [main] user.language = en
   [testng] [2024-07-07 01:42:25,481] [main] user.country = ${user.country}
   [testng] [2024-07-07 01:42:25,482] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-07-07 01:42:26,391] [main] ----------------------------------------
   [testng] [2024-07-07 01:42:26,392] [main] Total files: 15
   [testng] [2024-07-07 01:42:26,392] [main] Scan time: 0.909 s (60 ms/file)
   [testng] [2024-07-07 01:42:26,392] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 15 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-07-07 01:42:34,798] [pool-1-thread-1] Initializing /data/samples/ICBM/icbm_template_3.00mm.mnc: 
   [testng] 01:42:34,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:42:34,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:42:34,800 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-07_01-42-34.log]
   [testng] 01:42:34,801 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7bbf9853 - End of configuration.
   [testng] [2024-07-07 01:42:34,836] [pool-1-thread-12] Initializing /data/bigbrain/8-bit_full_400um_2009b_sym.mnc: 
   [testng] 01:42:34,837 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 01:42:34,837 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:42:34,838 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-07_01-42-34.log]
   [testng] 01:42:34,839 |-INFO in ch.qos.logback.core.sift.SiftProcessor@604c001f - End of configuration.
   [testng] [2024-07-07 01:42:36,145] [pool-1-thread-11] Initializing /data/bigbrain/pm6479o.mnc: 
   [testng] 01:42:36,145 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 01:42:36,145 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:42:36,147 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-07_01-42-36.log]
   [testng] 01:42:36,147 |-INFO in ch.qos.logback.core.sift.SiftProcessor@134354f0 - End of configuration.
   [testng] [2024-07-07 01:42:37,001] [pool-1-thread-10] Initializing /data/samples/ICBM/icbm_template_2.00mm.mnc: 
   [testng] 01:42:37,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:42:37,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:42:37,002 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-07_01-42-37.log]
   [testng] 01:42:37,003 |-INFO in ch.qos.logback.core.sift.SiftProcessor@924c022 - End of configuration.
   [testng] [2024-07-07 01:42:37,020] [pool-1-thread-9] Initializing /data/qa-17215/IBSR01.mnc: 
   [testng] 01:42:37,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:42:37,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:42:37,021 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-07_01-42-37.log]
   [testng] 01:42:37,022 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43029ae8 - End of configuration.
   [testng] [2024-07-07 01:42:37,131] [pool-1-thread-8] Initializing /data/samples/ICBM/icbm_template_4.00mm.mnc: 
   [testng] 01:42:37,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:42:37,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:42:37,132 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-07_01-42-37.log]
   [testng] 01:42:37,133 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46af4b0e - End of configuration.
   [testng] [2024-07-07 01:42:37,147] [pool-1-thread-7] Initializing /data/daren/test_32bit_float.mnc: 
   [testng] 01:42:37,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:42:37,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:42:37,148 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-07_01-42-37.log]
   [testng] 01:42:37,148 |-INFO in ch.qos.logback.core.sift.SiftProcessor@345592b9 - End of configuration.
   [testng] [2024-07-07 01:42:37,513] [pool-1-thread-6] Initializing /data/samples/ICBM/icbm_atlas_cerebellum_avg_53_mask_1mm.mnc: 
   [testng] 01:42:37,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:42:37,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:42:37,514 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-07_01-42-37.log]
   [testng] 01:42:37,515 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fe97bd1 - End of configuration.
   [testng] [2024-07-07 01:42:37,581] [pool-1-thread-5] Initializing /data/samples/ICBM/icbm_template_zero.75mm.mnc: 
   [testng] 01:42:37,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:42:37,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:42:37,583 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-07_01-42-37.log]
   [testng] 01:42:37,584 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b44a3e9 - End of configuration.
   [testng] [2024-07-07 01:42:37,652] [pool-1-thread-4] Initializing /data/samples/N3/average_305_mask_1mm.mnc: 
   [testng] 01:42:37,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:42:37,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:42:37,653 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-07_01-42-37.log]
   [testng] 01:42:37,653 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ad170ca - End of configuration.
   [testng] [2024-07-07 01:42:37,701] [pool-1-thread-3] Initializing /data/samples/ICBM/icbm_template_one.50mm.mnc: 
   [testng] 01:42:37,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:42:37,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:42:37,703 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-07_01-42-37.log]
   [testng] 01:42:37,703 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5876cc97 - End of configuration.
   [testng] [2024-07-07 01:42:37,720] [pool-1-thread-2] Initializing /data/samples/ICBM/icbm_template_6.00mm.mnc: 
   [testng] 01:42:37,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:42:37,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:42:37,721 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-07_01-42-37.log]
   [testng] 01:42:37,721 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a5e72b1 - End of configuration.

BUILD SUCCESSFUL
Total time: 37 seconds
Finished: SUCCESS