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Started by upstream project "BIOFORMATS-test-repo" build number 114
originally caused by:
 Started by upstream project "Trigger" build number 127
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins18255231713441159309.sh
+ '[' afi = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_17766_merge_ci -v /uod/idr/repos/curated/afi:/data -v /uod/idr-scratch/merge-ci/curated/afi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 01:49:01,852 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:49:01,902 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:49:01,964 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:49:01,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:49:01,984 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:49:01,985 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:49:01,985 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:49:01,986 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:49:01,987 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5e600dd5 - End of configuration.
   [testng] 01:49:01,989 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@a38c7fe - Registering current configuration as safe fallback point
   [testng] 01:49:01,989 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6fdbe764 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 570 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-07-07 01:49:02,012] [main] java.version = 17.0.2
   [testng] 01:49:02,022 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:49:02,023 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:02,173 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-07_01-49-02.log]
   [testng] 01:49:02,176 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
   [testng] [2024-07-07 01:49:02,218] [main] testng.directory = /data
   [testng] [2024-07-07 01:49:02,219] [main] testng.configDirectory = /config
   [testng] [2024-07-07 01:49:02,271] [main] testng.multiplier = 1.0
   [testng] [2024-07-07 01:49:02,273] [main] testng.in-memory = false
   [testng] [2024-07-07 01:49:02,273] [main] testng.allow-missing = false
   [testng] [2024-07-07 01:49:02,274] [main] user.language = en
   [testng] [2024-07-07 01:49:02,274] [main] user.country = ${user.country}
   [testng] [2024-07-07 01:49:02,274] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-07-07 01:49:03,685] [main] ----------------------------------------
   [testng] [2024-07-07 01:49:03,685] [main] Total files: 16
   [testng] [2024-07-07 01:49:03,686] [main] Scan time: 1.411 s (88 ms/file)
   [testng] [2024-07-07 01:49:03,686] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 15 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-07-07 01:49:16,920] [pool-1-thread-1] Initializing /data/samples/5347.afi: 
   [testng] 01:49:16,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:49:16,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:16,922 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-07_01-49-16.log]
   [testng] 01:49:16,923 |-INFO in ch.qos.logback.core.sift.SiftProcessor@358c545f - End of configuration.
   [testng] [2024-07-07 01:49:17,015] [pool-1-thread-12] Initializing /data/samples/5414.afi: 
   [testng] 01:49:17,015 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 01:49:17,015 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:17,017 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-07_01-49-17.log]
   [testng] 01:49:17,017 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3746f933 - End of configuration.
   [testng] [2024-07-07 01:49:17,369] [pool-1-thread-11] Initializing /data/samples/5407.afi: 
   [testng] 01:49:17,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 01:49:17,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:17,371 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-07_01-49-17.log]
   [testng] 01:49:17,372 |-INFO in ch.qos.logback.core.sift.SiftProcessor@227b7264 - End of configuration.
   [testng] [2024-07-07 01:49:17,474] [pool-1-thread-10] Initializing /data/samples/5351.afi: 
   [testng] 01:49:17,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:49:17,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:17,475 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-07_01-49-17.log]
   [testng] 01:49:17,476 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77fce3be - End of configuration.
   [testng] [2024-07-07 01:49:17,662] [pool-1-thread-9] Initializing /data/samples/5343.afi: 
   [testng] 01:49:17,662 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:49:17,662 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:17,663 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-07_01-49-17.log]
   [testng] 01:49:17,664 |-INFO in ch.qos.logback.core.sift.SiftProcessor@100749c1 - End of configuration.
   [testng] [2024-07-07 01:49:17,768] [pool-1-thread-8] Initializing /data/samples/5383.afi: 
   [testng] 01:49:17,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:49:17,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:17,770 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-07_01-49-17.log]
   [testng] 01:49:17,770 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52dbcbf - End of configuration.
   [testng] [2024-07-07 01:49:17,864] [pool-1-thread-7] Initializing /data/samples/5440.afi: 
   [testng] 01:49:17,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:49:17,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:17,865 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-07_01-49-17.log]
   [testng] 01:49:17,865 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2fdbf4ac - End of configuration.
   [testng] [2024-07-07 01:49:18,031] [pool-1-thread-6] Initializing /data/samples/5358.afi: 
   [testng] 01:49:18,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:49:18,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:18,032 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-07_01-49-18.log]
   [testng] 01:49:18,033 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c606689 - End of configuration.
   [testng] [2024-07-07 01:49:18,133] [pool-1-thread-5] Initializing /data/samples/5365.afi: 
   [testng] 01:49:18,134 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:49:18,134 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:18,135 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-07_01-49-18.log]
   [testng] 01:49:18,135 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47afd8c1 - End of configuration.
   [testng] [2024-07-07 01:49:18,360] [pool-1-thread-4] Initializing /data/samples/5446.afi: 
   [testng] 01:49:18,360 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:49:18,360 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:18,361 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-07_01-49-18.log]
   [testng] 01:49:18,362 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c3959aa - End of configuration.
   [testng] [2024-07-07 01:49:18,501] [pool-1-thread-3] Initializing /data/samples/5371.afi: 
   [testng] 01:49:18,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:49:18,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:18,503 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-07_01-49-18.log]
   [testng] 01:49:18,503 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e7498d - End of configuration.
   [testng] [2024-07-07 01:49:18,677] [pool-1-thread-2] Initializing /data/samples/5387.afi: 
   [testng] 01:49:18,677 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:49:18,677 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:18,679 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-07_01-49-18.log]
   [testng] 01:49:18,679 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a506c95 - End of configuration.
   [testng] [2024-07-07 01:50:14,751] [pool-1-thread-6] Initializing /data/samples/5306.afi: 
   [testng] [2024-07-07 01:50:16,009] [pool-1-thread-4] Initializing /data/samples/5400.afi: 
   [testng] [2024-07-07 01:50:20,760] [pool-1-thread-5] Initializing /data/samples/5339.afi: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 795, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 2 minutes 34 seconds
Finished: SUCCESS