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Started by upstream project "BIOFORMATS-test-repo" build number 114 originally caused by: Started by upstream project "Trigger" build number 127 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins6672751504145926076.sh + '[' avi = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_17771_merge_ci -v /uod/idr/repos/curated/avi:/data -v /uod/idr-scratch/merge-ci/curated/avi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:53:11,868 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:53:11,958 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:53:11,995 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:53:11,996 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:53:12,006 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:53:12,007 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:53:12,007 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:53:12,008 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:53:12,008 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5e600dd5 - End of configuration. [testng] 01:53:12,009 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@a38c7fe - Registering current configuration as safe fallback point [testng] 01:53:12,009 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6fdbe764 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 542 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-07 01:53:12,026] [main] java.version = 17.0.2 [testng] 01:53:12,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:53:12,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:53:12,187 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-07_01-53-12.log] [testng] 01:53:12,190 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-07-07 01:53:12,193] [main] testng.directory = /data [testng] [2024-07-07 01:53:12,193] [main] testng.configDirectory = /config [testng] [2024-07-07 01:53:12,230] [main] testng.multiplier = 1.0 [testng] [2024-07-07 01:53:12,234] [main] testng.in-memory = false [testng] [2024-07-07 01:53:12,235] [main] testng.allow-missing = false [testng] [2024-07-07 01:53:12,235] [main] user.language = en [testng] [2024-07-07 01:53:12,235] [main] user.country = ${user.country} [testng] [2024-07-07 01:53:12,236] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-07-07 01:53:13,917] [main] ---------------------------------------- [testng] [2024-07-07 01:53:13,917] [main] Total files: 40 [testng] [2024-07-07 01:53:13,917] [main] Scan time: 1.675 s (41 ms/file) [testng] [2024-07-07 01:53:13,917] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 38 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-07 01:58:04,475] [pool-1-thread-1] Initializing /data/william/worm.avi: [testng] 01:58:04,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:58:04,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:58:04,476 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-07_01-58-04.log] [testng] 01:58:04,477 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28534d43 - End of configuration. [testng] [2024-07-07 01:58:04,500] [pool-1-thread-12] Initializing /data/kurt/40x_6um.avi: [testng] 01:58:04,500 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:58:04,500 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:58:04,501 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-07_01-58-04.log] [testng] 01:58:04,501 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70d1d0c5 - End of configuration. [testng] [2024-07-07 01:58:04,577] [pool-1-thread-11] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_4.avi: [testng] 01:58:04,577 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:58:04,577 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:58:04,579 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-07_01-58-04.log] [testng] 01:58:04,579 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5bacaa8c - End of configuration. [testng] [2024-07-07 01:58:04,597] [pool-1-thread-10] Initializing /data/qa-7336/2X_63X-DAPI-Emilin2_Filter_Render_Series.avi: [testng] 01:58:04,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:58:04,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:58:04,599 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-07_01-58-04.log] [testng] 01:58:04,599 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1551141e - End of configuration. [testng] [2024-07-07 01:58:04,645] [pool-1-thread-9] Initializing /data/qa-5019/nemo-2_1_.avi: [testng] 01:58:04,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:58:04,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:58:04,646 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-07_01-58-04.log] [testng] 01:58:04,647 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41e3881e - End of configuration. [testng] [2024-07-07 01:58:04,678] [pool-1-thread-8] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_3.avi: [testng] 01:58:04,679 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:58:04,679 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:58:04,679 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-07_01-58-04.log] [testng] 01:58:04,680 |-INFO in ch.qos.logback.core.sift.SiftProcessor@138cfb38 - End of configuration. [testng] [2024-07-07 01:58:04,698] [pool-1-thread-7] Initializing /data/roger/spheroid1-crop.lsm movie 2.avi: [testng] 01:58:04,699 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:58:04,699 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:58:04,699 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-07_01-58-04.log] [testng] 01:58:04,700 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a780815 - End of configuration. [testng] [2024-07-07 01:58:04,754] [pool-1-thread-6] Initializing /data/kurt/63x_6um.avi: [testng] 01:58:04,754 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:58:04,754 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:58:04,755 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-07_01-58-04.log] [testng] 01:58:04,755 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f6ec4a5 - End of configuration. [testng] [2024-07-07 01:58:04,813] [pool-1-thread-5] Initializing /data/roger/spheroid1-crop.lsm movie.avi: [testng] 01:58:04,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:58:04,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:58:04,814 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-07_01-58-04.log] [testng] 01:58:04,815 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a00284c - End of configuration. [testng] [2024-07-07 01:58:04,851] [pool-1-thread-4] Initializing /data/qa-5019/nemo-2_10_20.avi: [testng] 01:58:04,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:58:04,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:58:04,852 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-07_01-58-04.log] [testng] 01:58:04,852 |-INFO in ch.qos.logback.core.sift.SiftProcessor@695a231b - End of configuration. [testng] [2024-07-07 01:58:04,883] [pool-1-thread-3] Initializing /data/chris/APZ04_009.avi: [testng] 01:58:04,883 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:58:04,883 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:58:04,884 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-07_01-58-04.log] [testng] 01:58:04,884 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79bad6ba - End of configuration. [testng] [2024-07-07 01:58:09,579] [pool-1-thread-2] Initializing /data/chip_avi/Level004-WA-116.avi: [testng] 01:58:09,580 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:58:09,580 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:58:09,581 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-07_01-58-09.log] [testng] 01:58:09,582 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ec4583a - End of configuration. [testng] [2024-07-07 01:58:12,022] [pool-1-thread-4] Initializing /data/qa-11011/M-flow10001.avi: [testng] [2024-07-07 01:58:12,101] [pool-1-thread-1] Initializing /data/roger/op9middle40x.lsm movie 3.avi: [testng] [2024-07-07 01:58:12,134] [pool-1-thread-5] Initializing /data/qa-4232/11051920xdrywithincubatoronthenoff_Subset.avi: [testng] [2024-07-07 01:58:12,163] [pool-1-thread-2] Initializing /data/curtis/mri-stack-ij-new.avi: [testng] [2024-07-07 01:58:12,212] [pool-1-thread-11] Initializing /data/chip_avi/Level001-ES-083.avi: [testng] [2024-07-07 01:58:12,231] [pool-1-thread-8] Initializing /data/roger/op9middle40x.lsm movie.avi: [testng] [2024-07-07 01:58:12,268] [pool-1-thread-9] Initializing /data/jae/20xD_5minfor14h.avi: [testng] [2024-07-07 01:58:13,092] [pool-1-thread-7] Initializing /data/ascb/TIRF.avi: [testng] [2024-07-07 01:58:13,384] [pool-1-thread-10] Initializing /data/chip_avi/Level002-DB-090.avi: [testng] [2024-07-07 01:58:13,396] [pool-1-thread-12] Initializing /data/qa-7560/Ex9 ALADIN WT KO KI_DIC_ 31_07_2013_M1.avi: [testng] [2024-07-07 01:58:13,926] [pool-1-thread-6] Initializing /data/kurt/40x_6um_2.avi: [testng] [2024-07-07 01:58:14,287] [pool-1-thread-2] Initializing /data/prairie/cornea dc and macs.AVI: [testng] [2024-07-07 01:58:14,406] [pool-1-thread-10] Initializing /data/simon/24_bit_problem.avi: [testng] [2024-07-07 01:58:14,467] [pool-1-thread-11] Initializing /data/jules/GUV_long15N_10_20mb_debut_25102011_1_BW.avi: [testng] [2024-07-07 01:58:14,748] [pool-1-thread-1] Initializing /data/roger/op9middle40x.lsm movie 4.avi: [testng] [2024-07-07 01:58:14,816] [pool-1-thread-7] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_5.avi: [testng] [2024-07-07 01:58:14,910] [pool-1-thread-8] Initializing /data/curtis/mri-stack-bf.avi: [testng] [2024-07-07 01:58:14,979] [pool-1-thread-5] Initializing /data/pki/yinghua_USPI2-ASMKT772_111017100001_C10_f1.avi: [testng] [2024-07-07 01:58:15,281] [pool-1-thread-7] Initializing /data/qa-7450/MVI_3610.AVI: [testng] [2024-07-07 01:58:15,330] [pool-1-thread-11] Initializing /data/jules/GUV_long15N_10_10mb_debut_26102011_4.avi: [testng] [2024-07-07 01:58:38,721] [pool-1-thread-4] Initializing /data/sample-avis/rgb-odd-width/HyperStack.avi: [testng] [2024-07-07 01:58:38,735] [pool-1-thread-6] Initializing /data/chip_avi/Level003-DB-089.avi: [testng] [2024-07-07 01:58:38,791] [pool-1-thread-8] Initializing /data/curtis/mri-stack-ij-old.avi: [testng] [2024-07-07 01:58:38,912] [pool-1-thread-10] Initializing /data/sample-avis/extra-chunk/HyperStack.avi: [testng] [2024-07-07 01:58:38,996] [pool-1-thread-4] Initializing /data/roger/op9middle40x.lsm movie 2.avi: [testng] [2024-07-07 01:58:39,096] [pool-1-thread-2] Initializing /data/roger/spheroid1.lsm movie.avi: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 2014, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 5 minutes 48 seconds Finished: SUCCESS