Skip to content
[Jenkins]Jenkins
log in

Console Output

Started by upstream project "BIOFORMATS-test-repo" build number 114
originally caused by:
 Started by upstream project "Trigger" build number 127
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins8176753434741065562.sh
+ '[' nikon-jp2 = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_17831_merge_ci -v /uod/idr/repos/curated/nikon-jp2:/data -v /uod/idr-scratch/merge-ci/curated/nikon-jp2:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 02:33:10,749 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 02:33:10,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 02:33:10,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 02:33:10,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 02:33:10,820 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 02:33:10,821 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 02:33:10,821 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 02:33:10,821 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 02:33:10,821 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5e600dd5 - End of configuration.
   [testng] 02:33:10,822 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@a38c7fe - Registering current configuration as safe fallback point
   [testng] 02:33:10,822 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6fdbe764 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 550 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-07-07 02:33:10,831] [main] java.version = 17.0.2
   [testng] 02:33:10,834 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 02:33:10,834 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:33:11,014 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-07_02-33-10.log]
   [testng] 02:33:11,016 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
   [testng] [2024-07-07 02:33:11,018] [main] testng.directory = /data
   [testng] [2024-07-07 02:33:11,018] [main] testng.configDirectory = /config
   [testng] [2024-07-07 02:33:11,035] [main] testng.multiplier = 1.0
   [testng] [2024-07-07 02:33:11,036] [main] testng.in-memory = false
   [testng] [2024-07-07 02:33:11,036] [main] testng.allow-missing = false
   [testng] [2024-07-07 02:33:11,036] [main] user.language = en
   [testng] [2024-07-07 02:33:11,036] [main] user.country = ${user.country}
   [testng] [2024-07-07 02:33:11,036] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-07-07 02:33:11,594] [main] ----------------------------------------
   [testng] [2024-07-07 02:33:11,594] [main] Total files: 11
   [testng] [2024-07-07 02:33:11,594] [main] Scan time: 0.557 s (50 ms/file)
   [testng] [2024-07-07 02:33:11,594] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 11 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-07-07 02:33:13,149] [pool-1-thread-1] Initializing /data/kira/DapiFitcTexRed008B.tif: 
   [testng] 02:33:13,150 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 02:33:13,150 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:33:13,151 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-07_02-33-13.log]
   [testng] 02:33:13,151 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c2ef529 - End of configuration.
   [testng] [2024-07-07 02:33:13,227] [pool-1-thread-11] Initializing /data/kira/DapiFitcTexRed008.jp2: 
   [testng] 02:33:13,228 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 02:33:13,228 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:33:13,229 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-07_02-33-13.log]
   [testng] 02:33:13,229 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a4f7932 - End of configuration.
   [testng] [2024-07-07 02:33:13,381] [pool-1-thread-10] Initializing /data/kira/DapiFitcTexRed003.jpg: 
   [testng] 02:33:13,382 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 02:33:13,382 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:33:13,383 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-07_02-33-13.log]
   [testng] 02:33:13,383 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ae93a49 - End of configuration.
   [testng] [2024-07-07 02:33:13,501] [pool-1-thread-9] Initializing /data/kira/DapiFitcTexRed006.png: 
   [testng] 02:33:13,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 02:33:13,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:33:13,502 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-07_02-33-13.log]
   [testng] 02:33:13,502 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f8e69d7 - End of configuration.
   [testng] [2024-07-07 02:33:13,515] [pool-1-thread-8] Initializing /data/kira/DapiFitcTexRed004.tif: 
   [testng] 02:33:13,515 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 02:33:13,515 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:33:13,516 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-07_02-33-13.log]
   [testng] 02:33:13,516 |-INFO in ch.qos.logback.core.sift.SiftProcessor@702f9b6 - End of configuration.
   [testng] [2024-07-07 02:33:13,639] [pool-1-thread-7] Initializing /data/kira/DapiFitcTexRed008R.tif: 
   [testng] 02:33:13,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 02:33:13,640 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:33:13,641 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-07_02-33-13.log]
   [testng] 02:33:13,641 |-INFO in ch.qos.logback.core.sift.SiftProcessor@555c245f - End of configuration.
   [testng] [2024-07-07 02:33:13,746] [pool-1-thread-6] Initializing /data/kira/DapiFitcTexRed008BGR.tif: 
   [testng] 02:33:13,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 02:33:13,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:33:13,748 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-07_02-33-13.log]
   [testng] 02:33:13,748 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57f3ac08 - End of configuration.
   [testng] [2024-07-07 02:33:13,824] [pool-1-thread-5] Initializing /data/kira/DapiFitcTexRed007.gif: 
   [testng] 02:33:13,824 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 02:33:13,824 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:33:13,825 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-07_02-33-13.log]
   [testng] 02:33:13,825 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c14bf0 - End of configuration.
   [testng] [2024-07-07 02:33:13,844] [pool-1-thread-4] Initializing /data/kira/DapiFitcTexRed005.bmp: 
   [testng] 02:33:13,845 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 02:33:13,845 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:33:13,846 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-07_02-33-13.log]
   [testng] 02:33:13,847 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d2b60e6 - End of configuration.
   [testng] [2024-07-07 02:33:13,859] [pool-1-thread-3] Initializing /data/kira/DapiFitcTexRed008G.tif: 
   [testng] 02:33:13,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 02:33:13,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:33:13,860 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-07_02-33-13.log]
   [testng] 02:33:13,860 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3fb4087f - End of configuration.
   [testng] [2024-07-07 02:33:13,938] [pool-1-thread-2] Initializing /data/kira/DapiFitcTexRed001.jp2: 
   [testng] 02:33:13,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 02:33:13,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:33:13,939 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-07_02-33-13.log]
   [testng] 02:33:13,940 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c78e36d - End of configuration.
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 583, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 20 seconds
Finished: SUCCESS