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Started by upstream project "BIOFORMATS-test-repo" build number 115 originally caused by: Started by upstream project "Trigger" build number 128 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins4087036835414421804.sh + '[' andor = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_17904_merge_ci -v /uod/idr/repos/curated/andor:/data -v /uod/idr-scratch/merge-ci/curated/andor:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:30:12,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:30:12,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:30:12,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:30:12,178 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:30:12,192 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:30:12,193 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:30:12,193 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:30:12,194 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:30:12,194 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 01:30:12,195 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 01:30:12,195 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 442 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-08 01:30:12,210] [main] java.version = 1.8.0_342 [testng] 01:30:12,215 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:30:12,215 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:12,293 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-08_01-30-12.log] [testng] 01:30:12,296 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-07-08 01:30:12,300] [main] testng.directory = /data [testng] [2024-07-08 01:30:12,301] [main] testng.configDirectory = /config [testng] [2024-07-08 01:30:12,325] [main] testng.multiplier = 1.0 [testng] [2024-07-08 01:30:12,325] [main] testng.in-memory = false [testng] [2024-07-08 01:30:12,325] [main] testng.allow-missing = false [testng] [2024-07-08 01:30:12,325] [main] user.language = fr [testng] [2024-07-08 01:30:12,325] [main] user.country = FR [testng] [2024-07-08 01:30:12,325] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-07-08 01:30:14,455] [main] ---------------------------------------- [testng] [2024-07-08 01:30:14,455] [main] Total files: 70 [testng] [2024-07-08 01:30:14,456] [main] Scan time: 2.13 s (30 ms/file) [testng] [2024-07-08 01:30:14,456] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 63 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-08 01:30:25,061] [pool-1-thread-1] Initializing /data/david/2_20100318_121430 PM/2_z0033.tif: [testng] 01:30:25,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:30:25,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:25,062 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-08_01-30-25.log] [testng] 01:30:25,063 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1688dfdf - End of configuration. [testng] [2024-07-08 01:30:25,126] [pool-1-thread-12] Initializing /data/david/2_20100318_121430 PM/2_z0007.tif: [testng] 01:30:25,126 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:30:25,126 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:25,127 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-08_01-30-25.log] [testng] 01:30:25,127 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a1c9283 - End of configuration. [testng] [2024-07-08 01:30:25,154] [pool-1-thread-11] Initializing /data/james/Protocol1.tif: [testng] 01:30:25,154 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:30:25,154 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:25,155 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-08_01-30-25.log] [testng] 01:30:25,155 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f355f1d - End of configuration. [testng] [2024-07-08 01:30:25,184] [pool-1-thread-10] Initializing /data/david/2_20100318_121430 PM/2_z0004.tif: [testng] 01:30:25,184 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:30:25,184 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:25,184 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-08_01-30-25.log] [testng] 01:30:25,185 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a2280f0 - End of configuration. [testng] [2024-07-08 01:30:25,211] [pool-1-thread-9] Initializing /data/david/2_20100318_121430 PM/2_z0009.tif: [testng] 01:30:25,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:30:25,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:25,212 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-08_01-30-25.log] [testng] 01:30:25,212 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1bb4154b - End of configuration. [testng] [2024-07-08 01:30:25,241] [pool-1-thread-8] Initializing /data/mario/MF Mon 2x2 + Z(39um in 13 planes).tif: [testng] 01:30:25,241 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:30:25,241 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:25,242 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-08_01-30-25.log] [testng] 01:30:25,242 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11eb6c6c - End of configuration. [testng] [2024-07-08 01:30:25,327] [pool-1-thread-7] Initializing /data/david/2_20100318_121430 PM/2_z0026.tif: [testng] 01:30:25,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:30:25,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:25,328 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-08_01-30-25.log] [testng] 01:30:25,328 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1eebeb59 - End of configuration. [testng] [2024-07-08 01:30:25,350] [pool-1-thread-6] Initializing /data/david/2_20100318_121430 PM/2_z0018.tif: [testng] 01:30:25,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:30:25,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:25,351 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-08_01-30-25.log] [testng] 01:30:25,351 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d75c905 - End of configuration. [testng] [2024-07-08 01:30:25,376] [pool-1-thread-5] Initializing /data/pawel/UTP_03F_CROP_SUBREGION1.tif: [testng] 01:30:25,376 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:30:25,376 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:25,377 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-08_01-30-25.log] [testng] 01:30:25,377 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f997be6 - End of configuration. [testng] [2024-07-08 01:30:25,396] [pool-1-thread-4] Initializing /data/mario/Mon 3x3 + Z(39um in 13 planes).tif: [testng] 01:30:25,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:30:25,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:25,396 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-08_01-30-25.log] [testng] 01:30:25,397 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e8214f6 - End of configuration. [testng] [2024-07-08 01:30:25,475] [pool-1-thread-3] Initializing /data/pariksheet/Apple_Actin_GFP_Cad_4.tif: [testng] 01:30:25,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:30:25,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:25,475 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-08_01-30-25.log] [testng] 01:30:25,476 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1df3c43e - End of configuration. [testng] [2024-07-08 01:30:25,552] [pool-1-thread-2] Initializing /data/david/2_20100318_121430 PM/2_z0021.tif: [testng] 01:30:25,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:30:25,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:25,553 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-08_01-30-25.log] [testng] 01:30:25,553 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23767f5c - End of configuration. [testng] [2024-07-08 01:30:27,010] [pool-1-thread-5] Initializing /data/david/2_20100318_121430 PM/2_z0024.tif: [testng] [2024-07-08 01:30:27,486] [pool-1-thread-11] Initializing /data/david/2_20100318_121430 PM/2_z0017.tif: [testng] [2024-07-08 01:30:27,512] [pool-1-thread-9] Initializing /data/david/2_20100318_121430 PM/2_z0013.tif: [testng] [2024-07-08 01:30:27,544] [pool-1-thread-6] Initializing /data/benjamin/BPB_20101105_022.tif: [testng] [2024-07-08 01:30:27,577] [pool-1-thread-2] Initializing /data/david/2_20100318_121430 PM/2_z0006.tif: [testng] [2024-07-08 01:30:27,603] [pool-1-thread-10] Initializing /data/david/2_20100318_121430 PM/2_z0011.tif: [testng] [2024-07-08 01:30:27,630] [pool-1-thread-7] Initializing /data/david/2_20100318_121430 PM/2_z0016.tif: [testng] [2024-07-08 01:30:27,682] [pool-1-thread-12] Initializing /data/david/2_20100318_121430 PM/2_z0019.tif: [testng] [2024-07-08 01:30:27,779] [pool-1-thread-1] Initializing /data/david/2_20100318_121430 PM/2_z0023.tif: [testng] [2024-07-08 01:30:28,210] [pool-1-thread-3] Initializing /data/david/2_20100318_121430 PM/2_z0037.tif: [testng] [2024-07-08 01:30:28,342] [pool-1-thread-5] Initializing /data/pariksheet/MOVIE1A_BFLAT.tif: [testng] [2024-07-08 01:30:28,496] [pool-1-thread-11] Initializing /data/david/2_20100318_121430 PM/2_z0015.tif: [testng] [2024-07-08 01:30:28,581] [pool-1-thread-6] Initializing /data/david/2_20100318_121430 PM/2_z0043.tif: [testng] [2024-07-08 01:30:28,652] [pool-1-thread-9] Initializing /data/mark/VESSEL-DEC-Z.tif: [testng] [2024-07-08 01:30:28,683] [pool-1-thread-2] Initializing /data/david/2_20100318_121430 PM/2_z0012.tif: [testng] [2024-07-08 01:30:28,751] [pool-1-thread-7] Initializing /data/david/2_20100318_121430 PM/2_z0031.tif: [testng] [2024-07-08 01:30:28,771] [pool-1-thread-10] Initializing /data/mark/MF-2CH-Z-T.tif: [testng] [2024-07-08 01:30:28,814] [pool-1-thread-12] Initializing /data/david/2_20100318_121430 PM/2_z0020.tif: [testng] [2024-07-08 01:30:28,837] [pool-1-thread-1] Initializing /data/david/2_20100318_121430 PM/2_z0005.tif: [testng] [2024-07-08 01:30:29,000] [pool-1-thread-8] Initializing /data/david/2_20100318_121430 PM/2_z0040.tif: [testng] [2024-07-08 01:30:29,109] [pool-1-thread-3] Initializing /data/david/2_20100318_121430 PM/2_z0038.tif: [testng] [2024-07-08 01:30:29,130] [pool-1-thread-4] Initializing /data/david/2_20100318_121430 PM/2_z0002.tif: [testng] [2024-07-08 01:30:29,342] [pool-1-thread-6] Initializing /data/david/2_20100318_121430 PM/2_z0030.tif: [testng] [2024-07-08 01:30:29,367] [pool-1-thread-11] Initializing /data/david/2_20100318_121430 PM/2_z0042.tif: [testng] [2024-07-08 01:30:29,425] [pool-1-thread-9] Initializing /data/david/2_20100318_121430 PM/2_z0010.tif: [testng] [2024-07-08 01:30:29,471] [pool-1-thread-12] Initializing /data/pariksheet/pretty image.tif: [testng] [2024-07-08 01:30:29,542] [pool-1-thread-1] Initializing /data/david/2_20100318_121430 PM/2_z0027.tif: [testng] [2024-07-08 01:30:29,574] [pool-1-thread-7] Initializing /data/pariksheet/Spirochete_wt_N40_OspA-FITC_1_25_no7a.tif: [testng] [2024-07-08 01:30:29,696] [pool-1-thread-8] Initializing /data/david/2_20100318_121430 PM/2_z0032.tif: [testng] [2024-07-08 01:30:29,717] [pool-1-thread-10] Initializing /data/david/2_20100318_121430 PM/2_z0022.tif: [testng] [2024-07-08 01:30:29,743] [pool-1-thread-2] Initializing /data/david/2_20100318_121430 PM/2_z0044.tif: [testng] [2024-07-08 01:30:29,781] [pool-1-thread-3] Initializing /data/david/2_20100318_121430 PM/2_z0028.tif: [testng] [2024-07-08 01:30:29,910] [pool-1-thread-4] Initializing /data/david/2_20100318_121430 PM/2_z0003.tif: [testng] [2024-07-08 01:30:30,063] [pool-1-thread-6] Initializing /data/david/2_20100318_121430 PM/2_z0039.tif: [testng] [2024-07-08 01:30:30,096] [pool-1-thread-11] Initializing /data/david/2_20100318_121430 PM/2_z0041.tif: [testng] [2024-07-08 01:30:30,139] [pool-1-thread-1] Initializing /data/benjamin/bpb2011201_001.tif: [testng] [2024-07-08 01:30:30,203] [pool-1-thread-12] Initializing /data/david/2_20100318_121430 PM/2_z0034.tif: [testng] [2024-07-08 01:30:30,269] [pool-1-thread-9] Initializing /data/mario/Mon 3x3.tif: [testng] [2024-07-08 01:30:30,330] [pool-1-thread-8] Initializing /data/david/2_20100318_121430 PM/2_z0014.tif: [testng] [2024-07-08 01:30:30,429] [pool-1-thread-10] Initializing /data/david/2_20100318_121430 PM/2_z0025.tif: [testng] [2024-07-08 01:30:30,492] [pool-1-thread-3] Initializing /data/mario/MF Mon 2x2.tif: [testng] [2024-07-08 01:30:30,530] [pool-1-thread-2] Initializing /data/david/2_20100318_121430 PM/2_z0001.tif: [testng] [2024-07-08 01:30:30,549] [pool-1-thread-4] Initializing /data/mark/FURA2-2CH-T.tif: [testng] [2024-07-08 01:30:30,631] [pool-1-thread-7] Initializing /data/david/2_20100318_121430 PM/2_z0029.tif: [testng] [2024-07-08 01:30:30,726] [pool-1-thread-6] Initializing /data/david/2_20100318_121430 PM/2_z0036.tif: [testng] [2024-07-08 01:30:30,819] [pool-1-thread-11] Initializing /data/david/2_20100318_121430 PM/2_z0008.tif: [testng] [2024-07-08 01:30:30,918] [pool-1-thread-5] Initializing /data/qa-16928/2Ch_Z10_T10.tif: [testng] [2024-07-08 01:30:31,114] [pool-1-thread-12] Initializing /data/david/2_20100318_121430 PM/2_z0000.tif: [testng] [2024-07-08 01:30:31,138] [pool-1-thread-8] Initializing /data/chris/Tucid_control_20.tif: [testng] [2024-07-08 01:30:31,452] [pool-1-thread-10] Initializing /data/david/2_20100318_121430 PM/2_z0045.tif: [testng] [2024-07-08 01:30:31,475] [pool-1-thread-4] Initializing /data/david/2_20100318_121430 PM/2_z0035.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 3339, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 25 seconds Finished: SUCCESS