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Started by upstream project "BIOFORMATS-test-repo" build number 12 originally caused by: Started by upstream project "Trigger" build number 15 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins17054181874691690187.sh + '[' fei = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_1802_merge_ci -v /uod/idr/repos/curated/fei:/data -v /uod/idr-scratch/merge-ci/curated/fei:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 00:27:41,845 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:27:41,848 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 00:27:41,848 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:27:41,849 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:27:41,850 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:27:41,851 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:27:41,851 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:27:41,851 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:27:41,852 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:27:41,853 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:27:41,853 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:27:41,854 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:27:42,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:27:42,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:27:42,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:27:42,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:27:42,089 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:27:42,089 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:27:42,089 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:27:42,090 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:27:42,090 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 00:27:42,090 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 00:27:42,091 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 239 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-03-26 00:27:42,100] [main] java.version = 11.0.16 [testng] 00:27:42,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:27:42,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:42,149 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-26_00-27-42.log] [testng] 00:27:42,151 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-03-26 00:27:42,154] [main] testng.directory = /data [testng] [2024-03-26 00:27:42,155] [main] testng.configDirectory = /config [testng] [2024-03-26 00:27:42,169] [main] testng.multiplier = 1.0 [testng] [2024-03-26 00:27:42,172] [main] testng.in-memory = false [testng] [2024-03-26 00:27:42,172] [main] testng.allow-missing = false [testng] [2024-03-26 00:27:42,172] [main] user.language = en [testng] [2024-03-26 00:27:42,173] [main] user.country = ${user.country} [testng] [2024-03-26 00:27:42,173] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-03-26 00:27:43,958] [main] ---------------------------------------- [testng] [2024-03-26 00:27:43,958] [main] Total files: 21 [testng] [2024-03-26 00:27:43,958] [main] Scan time: 1.785 s (85 ms/file) [testng] [2024-03-26 00:27:43,958] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-03-26 00:27:47,502] [pool-1-thread-1] Initializing /data/venu/VENU.TIF: [testng] 00:27:47,502 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:27:47,502 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:47,504 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-26_00-27-47.log] [testng] 00:27:47,504 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35941ca1 - End of configuration. [testng] [2024-03-26 00:27:47,799] [pool-1-thread-12] Initializing /data/venu/VENU_Seven.TIF: [testng] 00:27:47,800 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:27:47,800 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:47,801 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-26_00-27-47.log] [testng] 00:27:47,801 |-INFO in ch.qos.logback.core.sift.SiftProcessor@746612dc - End of configuration. [testng] [2024-03-26 00:27:47,861] [pool-1-thread-11] Initializing /data/venu/VENU01.IMG: [testng] 00:27:47,861 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:27:47,861 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:47,862 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-26_00-27-47.log] [testng] 00:27:47,862 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6476e730 - End of configuration. [testng] [2024-03-26 00:27:47,895] [pool-1-thread-10] Initializing /data/qa-4264/08.51.17 CCD Acquire-Acquire CCD Image Display-Acquire CCD -0.tif: [testng] 00:27:47,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:27:47,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:47,897 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-26_00-27-47.log] [testng] 00:27:47,897 |-INFO in ch.qos.logback.core.sift.SiftProcessor@257d42b7 - End of configuration. [testng] [2024-03-26 00:27:48,013] [pool-1-thread-9] Initializing /data/venu/VENU_Six.TIF: [testng] 00:27:48,014 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:27:48,014 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:48,014 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-26_00-27-48.log] [testng] 00:27:48,015 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4476e930 - End of configuration. [testng] [2024-03-26 00:27:48,070] [pool-1-thread-8] Initializing /data/venu/VENU03.IMG: [testng] 00:27:48,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:27:48,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:48,071 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-26_00-27-48.log] [testng] 00:27:48,072 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46024b0f - End of configuration. [testng] [2024-03-26 00:27:48,102] [pool-1-thread-7] Initializing /data/venu/VENU02.TIF: [testng] 00:27:48,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:27:48,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:48,103 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-26_00-27-48.log] [testng] 00:27:48,104 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c438d92 - End of configuration. [testng] [2024-03-26 00:27:48,488] [pool-1-thread-6] Initializing /data/steffen/Batman_008.tif: [testng] 00:27:48,488 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:27:48,488 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:48,489 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-26_00-27-48.log] [testng] 00:27:48,489 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27d7a476 - End of configuration. [testng] [2024-03-26 00:27:48,550] [pool-1-thread-5] Initializing /data/venu/VENU_Eight.TIF: [testng] 00:27:48,550 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:27:48,550 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:48,551 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-26_00-27-48.log] [testng] 00:27:48,552 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65e5da88 - End of configuration. [testng] [2024-03-26 00:27:48,618] [pool-1-thread-4] Initializing /data/qa-11061/Tile_020-009-000_0.tif: [testng] 00:27:48,618 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:27:48,618 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:48,619 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-26_00-27-48.log] [testng] 00:27:48,620 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d06f9d1 - End of configuration. [testng] [2024-03-26 00:27:48,710] [pool-1-thread-3] Initializing /data/peter/ZC_PTCS_ED_1000x_002.tif: [testng] 00:27:48,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:27:48,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:48,711 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-26_00-27-48.log] [testng] 00:27:48,712 |-INFO in ch.qos.logback.core.sift.SiftProcessor@709c66fd - End of configuration. [testng] [2024-03-26 00:27:48,787] [pool-1-thread-2] Initializing /data/venu/VENU03.TIF: [testng] 00:27:48,787 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:27:48,787 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:48,788 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-26_00-27-48.log] [testng] 00:27:48,788 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fe9cbea - End of configuration. [testng] [2024-03-26 00:27:51,682] [pool-1-thread-8] Initializing /data/venu/VENU_Five.TIF: [testng] [2024-03-26 00:27:51,810] [pool-1-thread-9] Initializing /data/qa-10514/TITAN_FEI_TIFF_Test_Image.tif: [testng] [2024-03-26 00:27:51,947] [pool-1-thread-12] Initializing /data/venu/VENU01.TIF: [testng] [2024-03-26 00:27:52,048] [pool-1-thread-5] Initializing /data/venu/VENU02.IMG: [testng] [2024-03-26 00:27:52,102] [pool-1-thread-6] Initializing /data/antoine/Tile_001-002-000_0-000.tif: [testng] [2024-03-26 00:27:52,285] [pool-1-thread-11] Initializing /data/venu/VENU_Four.TIF: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 17 seconds Finished: SUCCESS