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Started by upstream project "BIOFORMATS-test-repo" build number 116 originally caused by: Started by upstream project "Trigger" build number 133 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins7699995258485833061.sh + '[' psd = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_18146_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:24:28,343 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:24:28,372 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:24:28,398 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:24:28,398 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:24:28,406 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:24:28,406 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:24:28,406 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:24:28,407 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:24:28,407 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5e600dd5 - End of configuration. [testng] 02:24:28,408 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@a38c7fe - Registering current configuration as safe fallback point [testng] 02:24:28,408 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6fdbe764 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 626 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-10 02:24:28,418] [main] java.version = 17.0.2 [testng] 02:24:28,422 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:24:28,422 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:28,574 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-10_02-24-28.log] [testng] 02:24:28,575 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-07-10 02:24:28,578] [main] testng.directory = /data [testng] [2024-07-10 02:24:28,578] [main] testng.configDirectory = /config [testng] [2024-07-10 02:24:28,600] [main] testng.multiplier = 1.0 [testng] [2024-07-10 02:24:28,601] [main] testng.in-memory = false [testng] [2024-07-10 02:24:28,601] [main] testng.allow-missing = false [testng] [2024-07-10 02:24:28,601] [main] user.language = en [testng] [2024-07-10 02:24:28,601] [main] user.country = ${user.country} [testng] [2024-07-10 02:24:28,601] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-07-10 02:24:29,604] [main] ---------------------------------------- [testng] [2024-07-10 02:24:29,604] [main] Total files: 18 [testng] [2024-07-10 02:24:29,604] [main] Scan time: 1.003 s (55 ms/file) [testng] [2024-07-10 02:24:29,605] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-10 02:24:31,492] [pool-1-thread-1] Initializing /data/cris/house.tif: [testng] 02:24:31,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:24:31,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:31,494 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-10_02-24-31.log] [testng] 02:24:31,494 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51e921f9 - End of configuration. [testng] [2024-07-10 02:24:31,564] [pool-1-thread-12] Initializing /data/qa-7632/23283078__NA_NA_27343.psd: [testng] 02:24:31,564 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:24:31,564 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:31,565 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-10_02-24-31.log] [testng] 02:24:31,566 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28c05bca - End of configuration. [testng] [2024-07-10 02:24:31,605] [pool-1-thread-11] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd: [testng] 02:24:31,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:24:31,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:31,607 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-10_02-24-31.log] [testng] 02:24:31,608 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58e13031 - End of configuration. [testng] [2024-07-10 02:24:31,648] [pool-1-thread-10] Initializing /data/qa-4117/caspase gel-1.psd: [testng] 02:24:31,648 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:24:31,648 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:31,649 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-10_02-24-31.log] [testng] 02:24:31,649 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e1bf021 - End of configuration. [testng] [2024-07-10 02:24:31,686] [pool-1-thread-9] Initializing /data/ascb/423.psd: [testng] 02:24:31,686 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:24:31,687 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:31,688 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-10_02-24-31.log] [testng] 02:24:31,688 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3416fffa - End of configuration. [testng] [2024-07-10 02:24:31,739] [pool-1-thread-8] Initializing /data/misc/glossy_orbs.psd: [testng] 02:24:31,739 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:24:31,739 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:31,740 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-10_02-24-31.log] [testng] 02:24:31,741 |-INFO in ch.qos.logback.core.sift.SiftProcessor@540a7e8e - End of configuration. [testng] [2024-07-10 02:24:31,762] [pool-1-thread-7] Initializing /data/jcb/Fig5A_siHP16h.tif: [testng] 02:24:31,762 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:24:31,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:31,764 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-10_02-24-31.log] [testng] 02:24:31,765 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5bbafb1a - End of configuration. [testng] [2024-07-10 02:24:31,831] [pool-1-thread-6] Initializing /data/jcb/Fig5A_sicont6h.tif: [testng] 02:24:31,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:24:31,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:31,833 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-10_02-24-31.log] [testng] 02:24:31,833 |-INFO in ch.qos.logback.core.sift.SiftProcessor@756a3221 - End of configuration. [testng] [2024-07-10 02:24:31,876] [pool-1-thread-5] Initializing /data/ascb/607x.psd: [testng] 02:24:31,876 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:24:31,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:31,878 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-10_02-24-31.log] [testng] 02:24:31,879 |-INFO in ch.qos.logback.core.sift.SiftProcessor@133e29c8 - End of configuration. [testng] [2024-07-10 02:24:31,947] [pool-1-thread-4] Initializing /data/big-images/8kx8k.psd: [testng] 02:24:31,947 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:24:31,947 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:31,948 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-10_02-24-31.log] [testng] 02:24:31,949 |-INFO in ch.qos.logback.core.sift.SiftProcessor@dda94be - End of configuration. [testng] [2024-07-10 02:24:32,046] [pool-1-thread-3] Initializing /data/misc/venus_composite_8bit.psd: [testng] 02:24:32,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:24:32,047 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:32,050 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-10_02-24-32.log] [testng] 02:24:32,051 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a40d993 - End of configuration. [testng] [2024-07-10 02:24:32,113] [pool-1-thread-2] Initializing /data/misc/smilie.psd: [testng] 02:24:32,114 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:24:32,114 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:32,115 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-10_02-24-32.log] [testng] 02:24:32,116 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6bf2cf7 - End of configuration. [testng] [2024-07-10 02:24:34,968] [pool-1-thread-8] Initializing /data/jcb/Fig5A_sip1506h.tif: [testng] [2024-07-10 02:24:34,994] [pool-1-thread-1] Initializing /data/misc/vig_drawing_1.psd: [testng] [2024-07-10 02:24:35,046] [pool-1-thread-11] Initializing /data/ascb/thin&thick fill.2.psd: [testng] [2024-07-10 02:24:35,086] [pool-1-thread-2] Initializing /data/misc/venus_composite.psd: [testng] [2024-07-10 02:24:35,552] [pool-1-thread-6] Initializing /data/simon/colour_separated_image.psd: [testng] [2024-07-10 02:24:35,574] [pool-1-thread-7] Initializing /data/misc/glossy_buttons.psd: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 36 seconds Finished: SUCCESS