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Started by upstream project "BIOFORMATS-test-repo" build number 118 originally caused by: Started by upstream project "Trigger" build number 135 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins5705294929400688763.sh + '[' hitachi = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_18357_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:22:26,938 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:22:26,940 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:22:26,940 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:22:26,941 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:22:26,941 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:22:26,942 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:22:26,942 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:22:26,942 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:22:26,943 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:22:26,943 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:22:26,943 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:22:26,943 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:22:27,206 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:22:27,206 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:22:27,241 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:22:27,241 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:22:27,251 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:22:27,251 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:22:27,251 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:22:27,252 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:22:27,252 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:22:27,253 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:22:27,253 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 310 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-12 01:22:27,264] [main] java.version = 1.8.0_342 [testng] 01:22:27,269 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:22:27,269 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:27,321 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-12_01-22-27.log] [testng] 01:22:27,323 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-07-12 01:22:27,325] [main] testng.directory = /data [testng] [2024-07-12 01:22:27,325] [main] testng.configDirectory = /config [testng] [2024-07-12 01:22:27,339] [main] testng.multiplier = 1.0 [testng] [2024-07-12 01:22:27,340] [main] testng.in-memory = false [testng] [2024-07-12 01:22:27,340] [main] testng.allow-missing = false [testng] [2024-07-12 01:22:27,340] [main] user.language = en [testng] [2024-07-12 01:22:27,340] [main] user.country = ${user.country} [testng] [2024-07-12 01:22:27,340] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-07-12 01:22:28,522] [main] ---------------------------------------- [testng] [2024-07-12 01:22:28,523] [main] Total files: 21 [testng] [2024-07-12 01:22:28,523] [main] Scan time: 1.182 s (56 ms/file) [testng] [2024-07-12 01:22:28,523] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-12 01:22:30,810] [pool-1-thread-1] Initializing /data/stefan/001_q01.txt: [testng] 01:22:30,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:22:30,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:30,811 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-12_01-22-30.log] [testng] 01:22:30,811 |-INFO in ch.qos.logback.core.sift.SiftProcessor@556df6c7 - End of configuration. [testng] [2024-07-12 01:22:30,847] [pool-1-thread-12] Initializing /data/stefan/001_q12.txt: [testng] 01:22:30,847 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:22:30,847 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:30,848 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-12_01-22-30.log] [testng] 01:22:30,848 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1aa2d8a2 - End of configuration. [testng] [2024-07-12 01:22:30,917] [pool-1-thread-11] Initializing /data/stefan/001_q04.txt: [testng] 01:22:30,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:22:30,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:30,918 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-12_01-22-30.log] [testng] 01:22:30,919 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20c0fdd4 - End of configuration. [testng] [2024-07-12 01:22:30,949] [pool-1-thread-10] Initializing /data/stefan/001_q08.txt: [testng] 01:22:30,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:22:30,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:30,950 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-12_01-22-30.log] [testng] 01:22:30,950 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58758a8 - End of configuration. [testng] [2024-07-12 01:22:31,021] [pool-1-thread-9] Initializing /data/stefan/001_q14.txt: [testng] 01:22:31,022 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:22:31,022 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:31,022 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-12_01-22-31.log] [testng] 01:22:31,022 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25127b7e - End of configuration. [testng] [2024-07-12 01:22:31,059] [pool-1-thread-8] Initializing /data/stefan/001_q02.txt: [testng] 01:22:31,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:22:31,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:31,060 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-12_01-22-31.log] [testng] 01:22:31,060 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b6e3da1 - End of configuration. [testng] [2024-07-12 01:22:31,084] [pool-1-thread-7] Initializing /data/stefan/001_q16.txt: [testng] 01:22:31,084 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:22:31,084 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:31,085 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-12_01-22-31.log] [testng] 01:22:31,085 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1745a8cc - End of configuration. [testng] [2024-07-12 01:22:31,123] [pool-1-thread-6] Initializing /data/stefan/001_q11.txt: [testng] 01:22:31,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:22:31,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:31,124 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-12_01-22-31.log] [testng] 01:22:31,125 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49d762ca - End of configuration. [testng] [2024-07-12 01:22:31,185] [pool-1-thread-5] Initializing /data/stefan/001_q06.txt: [testng] 01:22:31,185 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:22:31,185 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:31,186 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-12_01-22-31.log] [testng] 01:22:31,186 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64a908b7 - End of configuration. [testng] [2024-07-12 01:22:31,211] [pool-1-thread-4] Initializing /data/stefan/001_q10.txt: [testng] 01:22:31,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:22:31,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:31,212 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-12_01-22-31.log] [testng] 01:22:31,212 |-INFO in ch.qos.logback.core.sift.SiftProcessor@131c6e92 - End of configuration. [testng] [2024-07-12 01:22:31,275] [pool-1-thread-3] Initializing /data/stefan/001_q07.txt: [testng] 01:22:31,276 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:22:31,276 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:31,276 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-12_01-22-31.log] [testng] 01:22:31,277 |-INFO in ch.qos.logback.core.sift.SiftProcessor@504595e5 - End of configuration. [testng] [2024-07-12 01:22:31,351] [pool-1-thread-2] Initializing /data/stefan/001_q05.txt: [testng] 01:22:31,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:22:31,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:31,352 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-12_01-22-31.log] [testng] 01:22:31,353 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5bb1b58e - End of configuration. [testng] [2024-07-12 01:22:33,728] [pool-1-thread-1] Initializing /data/stefan/001_q15.txt: [testng] [2024-07-12 01:22:33,780] [pool-1-thread-9] Initializing /data/stefan/001_q13.txt: [testng] [2024-07-12 01:22:33,823] [pool-1-thread-8] Initializing /data/stefan/001_q03.txt: [testng] [2024-07-12 01:22:33,854] [pool-1-thread-4] Initializing /data/stefan/001_q18.txt: [testng] [2024-07-12 01:22:33,926] [pool-1-thread-3] Initializing /data/stefan/001_q17.txt: [testng] [2024-07-12 01:22:34,006] [pool-1-thread-10] Initializing /data/stefan/001_q09.txt: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 14 seconds Finished: SUCCESS