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Started by upstream project "BIOFORMATS-test-repo" build number 118 originally caused by: Started by upstream project "Trigger" build number 135 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins17375557658851681992.sh + '[' afi = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_18422_merge_ci -v /uod/idr/repos/curated/afi:/data -v /uod/idr-scratch/merge-ci/curated/afi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:54:18,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:54:18,148 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:54:18,185 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:54:18,185 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:54:18,197 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:54:18,197 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:54:18,197 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:54:18,198 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:54:18,198 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 01:54:18,199 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 01:54:18,199 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 636 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-12 01:54:18,211] [main] java.version = 1.8.0_342 [testng] 01:54:18,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:54:18,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:54:18,338 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-12_01-54-18.log] [testng] 01:54:18,341 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-07-12 01:54:18,363] [main] testng.directory = /data [testng] [2024-07-12 01:54:18,364] [main] testng.configDirectory = /config [testng] [2024-07-12 01:54:18,509] [main] testng.multiplier = 1.0 [testng] [2024-07-12 01:54:18,509] [main] testng.in-memory = false [testng] [2024-07-12 01:54:18,509] [main] testng.allow-missing = false [testng] [2024-07-12 01:54:18,510] [main] user.language = en [testng] [2024-07-12 01:54:18,510] [main] user.country = ${user.country} [testng] [2024-07-12 01:54:18,510] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-07-12 01:54:19,756] [main] ---------------------------------------- [testng] [2024-07-12 01:54:19,756] [main] Total files: 16 [testng] [2024-07-12 01:54:19,756] [main] Scan time: 1.246 s (77 ms/file) [testng] [2024-07-12 01:54:19,756] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 15 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-12 01:54:31,050] [pool-1-thread-1] Initializing /data/samples/5400.afi: [testng] 01:54:31,050 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:54:31,051 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:54:31,051 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-12_01-54-31.log] [testng] 01:54:31,052 |-INFO in ch.qos.logback.core.sift.SiftProcessor@375837b - End of configuration. [testng] [2024-07-12 01:54:31,178] [pool-1-thread-12] Initializing /data/samples/5351.afi: [testng] 01:54:31,178 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:54:31,178 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:54:31,179 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-12_01-54-31.log] [testng] 01:54:31,180 |-INFO in ch.qos.logback.core.sift.SiftProcessor@272e5e23 - End of configuration. [testng] [2024-07-12 01:54:31,312] [pool-1-thread-11] Initializing /data/samples/5306.afi: [testng] 01:54:31,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:54:31,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:54:31,313 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-12_01-54-31.log] [testng] 01:54:31,314 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1af40b79 - End of configuration. [testng] [2024-07-12 01:54:31,395] [pool-1-thread-10] Initializing /data/samples/5383.afi: [testng] 01:54:31,395 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:54:31,395 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:54:31,396 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-12_01-54-31.log] [testng] 01:54:31,396 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31185d01 - End of configuration. [testng] [2024-07-12 01:54:31,475] [pool-1-thread-9] Initializing /data/samples/5365.afi: [testng] 01:54:31,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:54:31,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:54:31,476 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-12_01-54-31.log] [testng] 01:54:31,476 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b688038 - End of configuration. [testng] [2024-07-12 01:54:31,600] [pool-1-thread-8] Initializing /data/samples/5440.afi: [testng] 01:54:31,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:54:31,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:54:31,601 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-12_01-54-31.log] [testng] 01:54:31,601 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2bfa2657 - End of configuration. [testng] [2024-07-12 01:54:31,720] [pool-1-thread-7] Initializing /data/samples/5446.afi: [testng] 01:54:31,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:54:31,721 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:54:31,721 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-12_01-54-31.log] [testng] 01:54:31,722 |-INFO in ch.qos.logback.core.sift.SiftProcessor@787cc445 - End of configuration. [testng] [2024-07-12 01:54:31,965] [pool-1-thread-6] Initializing /data/samples/5339.afi: [testng] 01:54:31,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:54:31,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:54:31,966 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-12_01-54-31.log] [testng] 01:54:31,966 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53e0d984 - End of configuration. [testng] [2024-07-12 01:54:32,031] [pool-1-thread-5] Initializing /data/samples/5387.afi: [testng] 01:54:32,032 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:54:32,032 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:54:32,033 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-12_01-54-32.log] [testng] 01:54:32,052 |-INFO in ch.qos.logback.core.sift.SiftProcessor@478c4d90 - End of configuration. [testng] [2024-07-12 01:54:32,227] [pool-1-thread-4] Initializing /data/samples/5407.afi: [testng] 01:54:32,228 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:54:32,228 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:54:32,228 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-12_01-54-32.log] [testng] 01:54:32,229 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e8201 - End of configuration. [testng] [2024-07-12 01:54:32,280] [pool-1-thread-3] Initializing /data/samples/5347.afi: [testng] 01:54:32,280 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:54:32,281 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:54:32,281 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-12_01-54-32.log] [testng] 01:54:32,282 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a4dea39 - End of configuration. [testng] [2024-07-12 01:54:32,374] [pool-1-thread-2] Initializing /data/samples/5358.afi: [testng] 01:54:32,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:54:32,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:54:32,377 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-12_01-54-32.log] [testng] 01:54:32,378 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5eeeb843 - End of configuration. [testng] [2024-07-12 01:55:26,306] [pool-1-thread-1] Initializing /data/samples/5414.afi: [testng] [2024-07-12 01:55:26,373] [pool-1-thread-8] Initializing /data/samples/5371.afi: [testng] [2024-07-12 01:55:26,460] [pool-1-thread-3] Initializing /data/samples/5343.afi: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 795, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 54 seconds Finished: SUCCESS