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Started by upstream project "BIOFORMATS-test-repo" build number 118 originally caused by: Started by upstream project "Trigger" build number 135 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins12660617262482221010.sh + '[' apng = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_18468_merge_ci -v /uod/idr/repos/curated/apng:/data -v /uod/idr-scratch/merge-ci/curated/apng:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:27:38,695 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:27:38,697 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 02:27:38,697 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:27:38,698 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:27:38,699 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:27:38,699 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:27:38,699 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:27:38,699 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:27:38,700 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:27:38,700 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:27:38,700 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:27:38,700 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:27:38,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:27:38,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:27:38,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:27:38,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:27:39,016 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:27:39,016 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:27:39,016 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:27:39,017 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:27:39,017 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 02:27:39,018 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 02:27:39,018 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 318 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-12 02:27:39,031] [main] java.version = 1.8.0_342 [testng] 02:27:39,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:27:39,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:39,125 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-12_02-27-39.log] [testng] 02:27:39,127 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-07-12 02:27:39,130] [main] testng.directory = /data [testng] [2024-07-12 02:27:39,130] [main] testng.configDirectory = /config [testng] [2024-07-12 02:27:39,145] [main] testng.multiplier = 1.0 [testng] [2024-07-12 02:27:39,145] [main] testng.in-memory = false [testng] [2024-07-12 02:27:39,145] [main] testng.allow-missing = false [testng] [2024-07-12 02:27:39,145] [main] user.language = en [testng] [2024-07-12 02:27:39,145] [main] user.country = ${user.country} [testng] [2024-07-12 02:27:39,145] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-07-12 02:27:39,959] [main] ---------------------------------------- [testng] [2024-07-12 02:27:39,959] [main] Total files: 21 [testng] [2024-07-12 02:27:39,959] [main] Scan time: 0.813 s (38 ms/file) [testng] [2024-07-12 02:27:39,959] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-12 02:27:41,583] [pool-1-thread-1] Initializing /data/samples/Sun.png: [testng] 02:27:41,583 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:27:41,583 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:41,584 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-12_02-27-41.log] [testng] 02:27:41,585 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58bd69ca - End of configuration. [testng] [2024-07-12 02:27:41,643] [pool-1-thread-12] Initializing /data/samples/atom.png: [testng] 02:27:41,643 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:27:41,643 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:41,644 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-12_02-27-41.log] [testng] 02:27:41,644 |-INFO in ch.qos.logback.core.sift.SiftProcessor@98f7926 - End of configuration. [testng] [2024-07-12 02:27:41,648] [pool-1-thread-10] Initializing /data/samples/monkey_apng.png: [testng] 02:27:41,648 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:27:41,648 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:41,649 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-12_02-27-41.log] [testng] 02:27:41,650 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2fb2798f - End of configuration. [testng] [2024-07-12 02:27:41,657] [pool-1-thread-11] Initializing /data/samples/orbit.png: [testng] 02:27:41,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:27:41,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:41,658 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-12_02-27-41.log] [testng] 02:27:41,658 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f45af51 - End of configuration. [testng] [2024-07-12 02:27:41,665] [pool-1-thread-9] Initializing /data/qa-7473/x.png: [testng] 02:27:41,665 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:27:41,665 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:41,666 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-12_02-27-41.log] [testng] 02:27:41,666 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e772ba5 - End of configuration. [testng] [2024-07-12 02:27:41,672] [pool-1-thread-8] Initializing /data/samples/william_wong04.png: [testng] 02:27:41,672 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:27:41,672 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:41,673 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-12_02-27-41.log] [testng] 02:27:41,673 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f848264 - End of configuration. [testng] [2024-07-12 02:27:41,680] [pool-1-thread-7] Initializing /data/samples/daniel_coltri_two.png: [testng] 02:27:41,681 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:27:41,681 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:41,683 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-12_02-27-41.log] [testng] 02:27:41,684 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f578de3 - End of configuration. [testng] [2024-07-12 02:27:41,691] [pool-1-thread-6] Initializing /data/qa-7473/n.tif: [testng] 02:27:41,691 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:27:41,691 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:41,692 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-12_02-27-41.log] [testng] 02:27:41,698 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ff7bee9 - End of configuration. [testng] [2024-07-12 02:27:41,763] [pool-1-thread-5] Initializing /data/samples/MoonPhases.png: [testng] 02:27:41,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:27:41,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:41,764 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-12_02-27-41.log] [testng] 02:27:41,765 |-INFO in ch.qos.logback.core.sift.SiftProcessor@82e879f - End of configuration. [testng] [2024-07-12 02:27:41,774] [pool-1-thread-4] Initializing /data/samples/joanna_viera01.png: [testng] 02:27:41,775 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:27:41,775 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:41,776 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-12_02-27-41.log] [testng] 02:27:41,777 |-INFO in ch.qos.logback.core.sift.SiftProcessor@788fc68 - End of configuration. [testng] [2024-07-12 02:27:41,783] [pool-1-thread-3] Initializing /data/samples/Matrix.png: [testng] 02:27:41,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:27:41,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:41,784 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-12_02-27-41.log] [testng] 02:27:41,784 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a603d2f - End of configuration. [testng] [2024-07-12 02:27:41,789] [pool-1-thread-2] Initializing /data/samples/phug_logo.png: [testng] 02:27:41,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:27:41,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:41,790 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-12_02-27-41.log] [testng] 02:27:41,791 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a2c15d1 - End of configuration. [testng] [2024-07-12 02:27:43,338] [pool-1-thread-9] Initializing /data/samples/william_wong02.png: [testng] [2024-07-12 02:27:43,349] [pool-1-thread-3] Initializing /data/samples/spinfox.png: [testng] [2024-07-12 02:27:43,357] [pool-1-thread-2] Initializing /data/samples/william_wong01.png: [testng] [2024-07-12 02:27:43,368] [pool-1-thread-11] Initializing /data/samples/william_wong05.png: [testng] [2024-07-12 02:27:43,374] [pool-1-thread-12] Initializing /data/colin/test.sfstdge.png: [testng] [2024-07-12 02:27:43,379] [pool-1-thread-8] Initializing /data/samples/daniel_coltri_one.png: [testng] [2024-07-12 02:27:43,390] [pool-1-thread-10] Initializing /data/samples/PhugAnimation3.png: [testng] [2024-07-12 02:27:43,396] [pool-1-thread-1] Initializing /data/samples/chompy2.png: [testng] [2024-07-12 02:27:43,403] [pool-1-thread-5] Initializing /data/samples/StarV838.png: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 9 seconds Finished: SUCCESS