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Started by upstream project "BIOFORMATS-test-repo" build number 118 originally caused by: Started by upstream project "Trigger" build number 135 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins10373602957818008132.sh + '[' bdv = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_18471_merge_ci -v /uod/idr/repos/curated/bdv:/data -v /uod/idr-scratch/merge-ci/curated/bdv:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:31:59,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:31:59,413 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:31:59,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:31:59,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:31:59,461 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:31:59,461 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:31:59,461 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:31:59,462 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:31:59,462 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 02:31:59,463 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 02:31:59,463 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 457 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-12 02:31:59,473] [main] java.version = 1.8.0_342 [testng] 02:31:59,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:31:59,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:31:59,553 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-12_02-31-59.log] [testng] 02:31:59,555 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-07-12 02:31:59,575] [main] testng.directory = /data [testng] [2024-07-12 02:31:59,576] [main] testng.configDirectory = /config [testng] [2024-07-12 02:31:59,600] [main] testng.multiplier = 1.0 [testng] [2024-07-12 02:31:59,600] [main] testng.in-memory = false [testng] [2024-07-12 02:31:59,600] [main] testng.allow-missing = false [testng] [2024-07-12 02:31:59,600] [main] user.language = en [testng] [2024-07-12 02:31:59,600] [main] user.country = ${user.country} [testng] [2024-07-12 02:31:59,600] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-07-12 02:32:02,112] [main] ---------------------------------------- [testng] [2024-07-12 02:32:02,112] [main] Total files: 12 [testng] [2024-07-12 02:32:02,112] [main] Scan time: 2.512 s (209 ms/file) [testng] [2024-07-12 02:32:02,112] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 5 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-12 02:46:25,260] [pool-1-thread-1] Initializing /data/public/idr0048/astroP65.h5: [testng] 02:46:25,261 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:46:25,261 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:46:25,262 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-12_02-46-25.log] [testng] 02:46:25,262 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b772594 - End of configuration. [testng] [2024-07-12 02:53:58,641] [pool-1-thread-5] Initializing /data/public/idr0048/WB.h5: [testng] 02:53:58,642 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:53:58,642 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:53:58,644 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-12_02-53-58.log] [testng] 02:53:58,645 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54ed8226 - End of configuration. [testng] [2024-07-12 02:59:06,068] [pool-1-thread-4] Initializing /data/public/idr0038/Lam-Cytok-MV-f0.h5: [testng] 02:59:06,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:59:06,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:59:06,070 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-12_02-59-06.log] [testng] 02:59:06,070 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43867dae - End of configuration. [testng] [2024-07-12 03:01:10,138] [pool-1-thread-3] Initializing /data/public/samples/drosophila.h5: [testng] 03:01:10,139 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:01:10,139 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:01:10,140 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-12_03-01-10.log] [testng] 03:01:10,140 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20584454 - End of configuration. [testng] [2024-07-12 03:02:10,210] [pool-1-thread-2] Initializing /data/public/samples/HisYFP-SPIM.h5: [testng] 03:02:10,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:02:10,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:02:10,212 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-12_03-02-10.log] [testng] 03:02:10,213 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e4b1dd8 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 265, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 45 minutes 42 seconds Finished: SUCCESS