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Started by upstream project "BIOFORMATS-test-repo" build number 118 originally caused by: Started by upstream project "Trigger" build number 135 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins9302404638449478417.sh + '[' biorad-gel = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_18475_merge_ci -v /uod/idr/repos/curated/biorad-gel:/data -v /uod/idr-scratch/merge-ci/curated/biorad-gel:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:35:24,177 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6b4a4e18 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:35:24,177 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:35:24,177 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:35:24,177 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:35:24,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:35:24,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:35:24,603 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:35:24,603 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:35:24,615 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:35:24,616 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:35:24,616 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:35:24,617 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:35:24,617 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 02:35:24,618 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 02:35:24,618 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6b4a4e18 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 441 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-12 02:35:24,633] [main] java.version = 1.8.0_342 [testng] 02:35:24,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:35:24,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:24,720 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-12_02-35-24.log] [testng] 02:35:24,723 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-07-12 02:35:24,726] [main] testng.directory = /data [testng] [2024-07-12 02:35:24,726] [main] testng.configDirectory = /config [testng] [2024-07-12 02:35:24,743] [main] testng.multiplier = 1.0 [testng] [2024-07-12 02:35:24,744] [main] testng.in-memory = false [testng] [2024-07-12 02:35:24,744] [main] testng.allow-missing = false [testng] [2024-07-12 02:35:24,744] [main] user.language = en [testng] [2024-07-12 02:35:24,744] [main] user.country = ${user.country} [testng] [2024-07-12 02:35:24,744] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-07-12 02:35:25,595] [main] ---------------------------------------- [testng] [2024-07-12 02:35:25,596] [main] Total files: 32 [testng] [2024-07-12 02:35:25,596] [main] Scan time: 0.851 s (26 ms/file) [testng] [2024-07-12 02:35:25,596] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 32 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-12 02:35:29,030] [pool-1-thread-1] Initializing /data/keith/PF020328saur v3.1sc: [testng] 02:35:29,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:35:29,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:29,032 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-12_02-35-29.log] [testng] 02:35:29,032 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1915200 - End of configuration. [testng] [2024-07-12 02:35:29,050] [pool-1-thread-12] Initializing /data/geert/good example1.1sc.jpg: [testng] 02:35:29,050 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:35:29,050 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:29,051 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-12_02-35-29.log] [testng] 02:35:29,051 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cc2ac3 - End of configuration. [testng] [2024-07-12 02:35:29,066] [pool-1-thread-11] Initializing /data/sylvain/2009-10-23 12hr 19min.tif: [testng] 02:35:29,066 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:35:29,066 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:29,067 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-12_02-35-29.log] [testng] 02:35:29,068 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33caa8f - End of configuration. [testng] [2024-07-12 02:35:29,115] [pool-1-thread-10] Initializing /data/geert/good example1.1sc: [testng] 02:35:29,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:35:29,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:29,116 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-12_02-35-29.log] [testng] 02:35:29,117 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46316cd4 - End of configuration. [testng] [2024-07-12 02:35:29,174] [pool-1-thread-9] Initializing /data/qa-29469/bad3.1sc: [testng] 02:35:29,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:35:29,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:29,175 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-12_02-35-29.log] [testng] 02:35:29,176 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5595581d - End of configuration. [testng] [2024-07-12 02:35:29,209] [pool-1-thread-8] Initializing /data/david/Opened in imageJ.tiff: [testng] 02:35:29,209 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:35:29,209 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:29,210 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-12_02-35-29.log] [testng] 02:35:29,210 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2dc45a40 - End of configuration. [testng] [2024-07-12 02:35:29,242] [pool-1-thread-7] Initializing /data/sylvain/2009-10-26 14hr 57min.tif: [testng] 02:35:29,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:35:29,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:29,243 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-12_02-35-29.log] [testng] 02:35:29,243 |-INFO in ch.qos.logback.core.sift.SiftProcessor@661e893c - End of configuration. [testng] [2024-07-12 02:35:29,287] [pool-1-thread-6] Initializing /data/qa-16880/c-src v7.1sc: [testng] 02:35:29,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:35:29,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:29,288 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-12_02-35-29.log] [testng] 02:35:29,289 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e5a12e0 - End of configuration. [testng] [2024-07-12 02:35:29,307] [pool-1-thread-5] Initializing /data/keith/test2.1sc: [testng] 02:35:29,307 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:35:29,307 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:29,308 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-12_02-35-29.log] [testng] 02:35:29,308 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73a3aee7 - End of configuration. [testng] [2024-07-12 02:35:29,324] [pool-1-thread-4] Initializing /data/sylvain/2009-10-26 14hr 56min: [testng] 02:35:29,324 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:35:29,324 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:29,324 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-12_02-35-29.log] [testng] 02:35:29,325 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5bbd91a8 - End of configuration. [testng] [2024-07-12 02:35:29,353] [pool-1-thread-3] Initializing /data/keith/pg020410saur3.1sc: [testng] 02:35:29,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:35:29,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:29,355 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-12_02-35-29.log] [testng] 02:35:29,355 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e474da9 - End of configuration. [testng] [2024-07-12 02:35:29,372] [pool-1-thread-2] Initializing /data/keith/test.1sc: [testng] 02:35:29,372 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:35:29,372 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:29,373 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-12_02-35-29.log] [testng] 02:35:29,373 |-INFO in ch.qos.logback.core.sift.SiftProcessor@513714d3 - End of configuration. [testng] [2024-07-12 02:35:31,025] [pool-1-thread-3] Initializing /data/adrian/test_img.1sc: [testng] [2024-07-12 02:35:31,068] [pool-1-thread-1] Initializing /data/samples/Criterion.1sc: [testng] [2024-07-12 02:35:31,117] [pool-1-thread-2] Initializing /data/sylvain/2009-10-26 14hr 59min.tif: [testng] [2024-07-12 02:35:31,167] [pool-1-thread-5] Initializing /data/sylvain/2009-10-26 14hr 59min: [testng] [2024-07-12 02:35:31,187] [pool-1-thread-8] Initializing /data/sylvain/2009-10-23 12hr 19min: [testng] [2024-07-12 02:35:31,208] [pool-1-thread-6] Initializing /data/qa-29459/bad.1sc: [testng] [2024-07-12 02:35:31,239] [pool-1-thread-9] Initializing /data/david/Converted in Quantity One (Biorad).tiff: [testng] [2024-07-12 02:35:31,285] [pool-1-thread-12] Initializing /data/geert/bad example1.1sc: [testng] [2024-07-12 02:35:31,553] [pool-1-thread-4] Initializing /data/sylvain/2009-10-26 14hr 56min.tif: [testng] [2024-07-12 02:35:31,727] [pool-1-thread-7] Initializing /data/qa-29459/bad.jpg: [testng] [2024-07-12 02:35:31,881] [pool-1-thread-11] Initializing /data/sylvain/2009-10-23 12hr 18min.tif: [testng] [2024-07-12 02:35:32,180] [pool-1-thread-10] Initializing /data/geert/bad example1.jpg: [testng] [2024-07-12 02:35:32,283] [pool-1-thread-9] Initializing /data/samples/imagesEight.1sc: [testng] [2024-07-12 02:35:32,487] [pool-1-thread-7] Initializing /data/qa-29469/bad2.1sc: [testng] [2024-07-12 02:35:32,546] [pool-1-thread-9] Initializing /data/sylvain/2009-10-23 12hr 18min: [testng] [2024-07-12 02:35:32,729] [pool-1-thread-8] Initializing /data/geert/bad example1.1sc.jpg: [testng] [2024-07-12 02:35:32,765] [pool-1-thread-6] Initializing /data/qa-29469/good.1sc: [testng] [2024-07-12 02:35:32,887] [pool-1-thread-2] Initializing /data/sylvain/2009-10-26 14hr 57min: [testng] [2024-07-12 02:35:32,964] [pool-1-thread-5] Initializing /data/david/Original Biorad Gel format file.1sc: [testng] [2024-07-12 02:35:33,174] [pool-1-thread-11] Initializing /data/keith/PF020426MRSA v2.1sc: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1696, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 16 seconds Finished: SUCCESS