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Started by upstream project "BIOFORMATS-test-repo" build number 118 originally caused by: Started by upstream project "Trigger" build number 135 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins9779469222674690101.sh + '[' cellr = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_18491_merge_ci -v /uod/idr/repos/curated/cellr:/data -v /uod/idr-scratch/merge-ci/curated/cellr:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:45:44,821 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6b4a4e18 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:45:44,821 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:45:44,822 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:45:44,822 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6b4a4e18 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:45:44,822 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6b4a4e18 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:45:44,822 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6b4a4e18 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:45:44,823 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:45:44,823 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:45:44,823 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:45:45,156 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:45:45,156 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:45:45,186 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:45:45,186 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:45:45,209 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:45:45,209 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:45:45,209 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:45:45,210 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:45:45,210 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 02:45:45,211 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 02:45:45,211 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6b4a4e18 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 389 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-12 02:45:45,221] [main] java.version = 1.8.0_342 [testng] 02:45:45,226 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:45:45,226 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:45:45,300 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-12_02-45-45.log] [testng] 02:45:45,302 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-07-12 02:45:45,304] [main] testng.directory = /data [testng] [2024-07-12 02:45:45,304] [main] testng.configDirectory = /config [testng] [2024-07-12 02:45:45,317] [main] testng.multiplier = 1.0 [testng] [2024-07-12 02:45:45,318] [main] testng.in-memory = false [testng] [2024-07-12 02:45:45,318] [main] testng.allow-missing = false [testng] [2024-07-12 02:45:45,318] [main] user.language = en [testng] [2024-07-12 02:45:45,318] [main] user.country = ${user.country} [testng] [2024-07-12 02:45:45,318] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-07-12 02:46:10,769] [main] ---------------------------------------- [testng] [2024-07-12 02:46:10,769] [main] Total files: 256 [testng] [2024-07-12 02:46:10,769] [main] Scan time: 25.451 s (99 ms/file) [testng] [2024-07-12 02:46:10,769] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 13 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-12 02:46:40,814] [pool-1-thread-1] Initializing /data/colin/08-10-09/08-10-09_d.mtb: [testng] 02:46:40,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:46:40,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:46:40,815 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-12_02-46-40.log] [testng] 02:46:40,816 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ba74683 - End of configuration. [testng] [2024-07-12 02:46:44,880] [pool-1-thread-12] Initializing /data/viktorie/Structure.jpg: [testng] 02:46:44,881 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:46:44,881 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:46:44,882 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-12_02-46-44.log] [testng] 02:46:44,882 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1510763b - End of configuration. [testng] [2024-07-12 02:46:44,913] [pool-1-thread-11] Initializing /data/qa-17107/MaterialsDemo/MaterialsDemo_d.mtb: [testng] 02:46:44,913 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:46:44,913 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:46:44,914 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-12_02-46-44.log] [testng] 02:46:44,915 |-INFO in ch.qos.logback.core.sift.SiftProcessor@391c79c5 - End of configuration. [testng] [2024-07-12 02:46:44,955] [pool-1-thread-10] Initializing /data/qa-17107/LifeScienceDemo/LifeScienceDemoSTAR_d.mtb: [testng] 02:46:44,955 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:46:44,955 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:46:44,956 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-12_02-46-44.log] [testng] 02:46:44,957 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68ecc19c - End of configuration. [testng] [2024-07-12 02:46:44,973] [pool-1-thread-9] Initializing /data/qa-17107/example2/example2_d.mtb: [testng] 02:46:44,973 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:46:44,973 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:46:44,974 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-12_02-46-44.log] [testng] 02:46:44,974 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69a92e9f - End of configuration. [testng] [2024-07-12 02:46:45,011] [pool-1-thread-8] Initializing /data/viktorie/090902/090902_d.mtb: [testng] 02:46:45,012 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:46:45,012 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:46:45,012 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-12_02-46-45.log] [testng] 02:46:45,013 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6dfd3f1c - End of configuration. [testng] [2024-07-12 02:46:45,036] [pool-1-thread-7] Initializing /data/qa-6659/12-07-05/12-07-05_d.mtb: [testng] 02:46:45,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:46:45,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:46:45,037 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-12_02-46-45.log] [testng] 02:46:45,037 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2773a99e - End of configuration. [testng] [2024-07-12 02:46:46,588] [pool-1-thread-6] Initializing /data/viktorie/2Channels.tif: [testng] 02:46:46,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:46:46,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:46:46,589 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-12_02-46-46.log] [testng] 02:46:46,590 |-INFO in ch.qos.logback.core.sift.SiftProcessor@652f2830 - End of configuration. [testng] [2024-07-12 02:46:46,631] [pool-1-thread-5] Initializing /data/viktorie/test/test_d.mtb: [testng] 02:46:46,631 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:46:46,631 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:46:46,632 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-12_02-46-46.log] [testng] 02:46:46,632 |-INFO in ch.qos.logback.core.sift.SiftProcessor@270816a3 - End of configuration. [testng] [2024-07-12 02:46:46,655] [pool-1-thread-4] Initializing /data/colin/07-06-21/07-06-21_d.mtb: [testng] 02:46:46,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:46:46,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:46:46,656 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-12_02-46-46.log] [testng] 02:46:46,656 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52d46e19 - End of configuration. [testng] [2024-07-12 02:46:46,789] [pool-1-thread-3] Initializing /data/clare/set_27_on_d.mtb: [testng] 02:46:46,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:46:46,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:46:46,790 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-12_02-46-46.log] [testng] 02:46:46,790 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26753d99 - End of configuration. [testng] [2024-07-12 02:46:47,324] [pool-1-thread-2] Initializing /data/kees/Mariaelena_d.mtb: [testng] 02:46:47,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:46:47,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:46:47,325 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-12_02-46-47.log] [testng] 02:46:47,326 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f6a4905 - End of configuration. [testng] [2024-07-12 02:46:49,322] [pool-1-thread-5] Initializing /data/qa-17107/plain/Plain_d.mtb: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 689, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 47 seconds Finished: SUCCESS