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Started by upstream project "BIOFORMATS-test-repo" build number 2 originally caused by: Started by upstream project "Trigger" build number 3 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins183646002682788496.sh + '[' pict = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_185_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:33:05,281 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:33:05,283 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 00:33:05,283 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:33:05,284 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:33:05,284 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:33:05,284 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:33:05,285 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:33:05,285 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:33:05,285 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:33:05,286 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:33:05,286 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:33:05,286 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:33:05,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:33:05,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:33:05,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:33:05,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:33:05,589 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:33:05,589 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:33:05,589 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:33:05,590 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:33:05,590 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 00:33:05,592 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 00:33:05,592 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 307 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-03-15 00:33:05,603] [main] java.version = 1.8.0_342 [testng] 00:33:05,606 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:33:05,606 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:33:05,655 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-15_00-33-05.log] [testng] 00:33:05,657 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-03-15 00:33:05,660] [main] testng.directory = /data [testng] [2024-03-15 00:33:05,661] [main] testng.configDirectory = /config [testng] [2024-03-15 00:33:05,675] [main] testng.multiplier = 1.0 [testng] [2024-03-15 00:33:05,675] [main] testng.in-memory = false [testng] [2024-03-15 00:33:05,676] [main] testng.allow-missing = false [testng] [2024-03-15 00:33:05,676] [main] user.language = en [testng] [2024-03-15 00:33:05,676] [main] user.country = ${user.country} [testng] [2024-03-15 00:33:05,676] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-03-15 00:33:06,102] [main] ---------------------------------------- [testng] [2024-03-15 00:33:06,103] [main] Total files: 25 [testng] [2024-03-15 00:33:06,103] [main] Scan time: 0.426 s (17 ms/file) [testng] [2024-03-15 00:33:06,103] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-03-15 00:33:08,083] [pool-1-thread-1] Initializing /data/brian/images/BLU.PCT: [testng] 00:33:08,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:33:08,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:33:08,084 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-15_00-33-08.log] [testng] 00:33:08,084 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c3e1d52 - End of configuration. [testng] [2024-03-15 00:33:08,132] [pool-1-thread-12] Initializing /data/brian/images/TRU256.PCT: [testng] 00:33:08,132 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:33:08,132 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:33:08,133 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-15_00-33-08.log] [testng] 00:33:08,133 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14fdfdb1 - End of configuration. [testng] [2024-03-15 00:33:08,154] [pool-1-thread-11] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] 00:33:08,154 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:33:08,154 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:33:08,155 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-15_00-33-08.log] [testng] 00:33:08,155 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3207e1ac - End of configuration. [testng] [2024-03-15 00:33:08,171] [pool-1-thread-10] Initializing /data/brian/images/FLAG_B32.pct: [testng] 00:33:08,171 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:33:08,171 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:33:08,172 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-15_00-33-08.log] [testng] 00:33:08,172 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22cbb6ac - End of configuration. [testng] [2024-03-15 00:33:08,289] [pool-1-thread-9] Initializing /data/brian/images/MARBLES_B32.pct: [testng] 00:33:08,289 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:33:08,289 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:33:08,290 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-15_00-33-08.log] [testng] 00:33:08,290 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15dab0b3 - End of configuration. [testng] [2024-03-15 00:33:08,438] [pool-1-thread-8] Initializing /data/jqd/sixteenBit.pict: [testng] 00:33:08,438 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:33:08,438 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:33:08,439 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-15_00-33-08.log] [testng] 00:33:08,439 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3168b5ad - End of configuration. [testng] [2024-03-15 00:33:08,456] [pool-1-thread-7] Initializing /data/jqd/mire32.pict: [testng] 00:33:08,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:33:08,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:33:08,457 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-15_00-33-08.log] [testng] 00:33:08,457 |-INFO in ch.qos.logback.core.sift.SiftProcessor@620644a8 - End of configuration. [testng] [2024-03-15 00:33:08,483] [pool-1-thread-6] Initializing /data/jqd/mireSixteen.pict: [testng] 00:33:08,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:33:08,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:33:08,484 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-15_00-33-08.log] [testng] 00:33:08,484 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7eae0383 - End of configuration. [testng] [2024-03-15 00:33:08,498] [pool-1-thread-5] Initializing /data/wayne/PotatoMeristem.pict: [testng] 00:33:08,498 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:33:08,498 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:33:08,499 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-15_00-33-08.log] [testng] 00:33:08,499 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20d20114 - End of configuration. [testng] [2024-03-15 00:33:08,568] [pool-1-thread-4] Initializing /data/brian/images/BLK.PCT: [testng] 00:33:08,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:33:08,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:33:08,569 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-15_00-33-08.log] [testng] 00:33:08,569 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41f5303d - End of configuration. [testng] [2024-03-15 00:33:08,610] [pool-1-thread-3] Initializing /data/brian/images/YEL.PCT: [testng] 00:33:08,610 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:33:08,610 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:33:08,611 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-15_00-33-08.log] [testng] 00:33:08,611 |-INFO in ch.qos.logback.core.sift.SiftProcessor@292d6ffa - End of configuration. [testng] [2024-03-15 00:33:08,651] [pool-1-thread-2] Initializing /data/brian/images/RED.PCT: [testng] 00:33:08,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:33:08,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:33:08,652 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-15_00-33-08.log] [testng] 00:33:08,653 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1961b558 - End of configuration. [testng] [2024-03-15 00:33:10,473] [pool-1-thread-6] Initializing /data/jqd/32bit.pict: [testng] [2024-03-15 00:33:10,520] [pool-1-thread-7] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] [2024-03-15 00:33:10,546] [pool-1-thread-11] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] [2024-03-15 00:33:10,584] [pool-1-thread-10] Initializing /data/brian/images/VENUS.pct: [testng] [2024-03-15 00:33:10,618] [pool-1-thread-12] Initializing /data/misc/planet.png: [testng] [2024-03-15 00:33:10,633] [pool-1-thread-8] Initializing /data/misc/swlogo.pict: [testng] [2024-03-15 00:33:10,886] [pool-1-thread-5] Initializing /data/brian/images/FLAG_B24.PCT: [testng] [2024-03-15 00:33:10,916] [pool-1-thread-4] Initializing /data/brian/images/GRN.PCT: [testng] [2024-03-15 00:33:11,029] [pool-1-thread-2] Initializing /data/misc/planet2.pict: [testng] [2024-03-15 00:33:11,069] [pool-1-thread-3] Initializing /data/misc/planet.pict: [testng] [2024-03-15 00:33:11,119] [pool-1-thread-1] Initializing /data/brian/images/FLAG_RGB.pct: [testng] [2024-03-15 00:33:11,329] [pool-1-thread-12] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] [2024-03-15 00:33:11,887] [pool-1-thread-9] Initializing /data/brian/images/WHT.PCT: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 10 seconds Finished: SUCCESS