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Started by upstream project "BIOFORMATS-test-repo" build number 12 originally caused by: Started by upstream project "Trigger" build number 15 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins9489469437141563776.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_1859_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:14:13,162 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:14:13,163 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 01:14:13,163 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:14:13,164 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:14:13,165 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:14:13,165 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:14:13,166 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:14:13,166 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:14:13,166 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:14:13,167 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:14:13,167 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:14:13,167 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:14:13,349 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:14:13,349 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:14:13,372 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:14:13,373 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:14:13,379 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:14:13,379 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:14:13,379 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:14:13,379 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:14:13,379 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 01:14:13,380 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 01:14:13,380 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 214 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-03-26 01:14:13,390] [main] java.version = 11.0.16 [testng] 01:14:13,394 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:14:13,394 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:14:13,445 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-26_01-14-13.log] [testng] 01:14:13,447 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-03-26 01:14:13,450] [main] testng.directory = /data [testng] [2024-03-26 01:14:13,450] [main] testng.configDirectory = /config [testng] [2024-03-26 01:14:13,460] [main] testng.multiplier = 1.0 [testng] [2024-03-26 01:14:13,461] [main] testng.in-memory = false [testng] [2024-03-26 01:14:13,462] [main] testng.allow-missing = false [testng] [2024-03-26 01:14:13,462] [main] user.language = en [testng] [2024-03-26 01:14:13,462] [main] user.country = ${user.country} [testng] [2024-03-26 01:14:13,462] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-03-26 01:22:12,256] [main] ---------------------------------------- [testng] [2024-03-26 01:22:12,256] [main] Total files: 7329 [testng] [2024-03-26 01:22:12,257] [main] Scan time: 478.794 s (65 ms/file) [testng] [2024-03-26 01:22:12,257] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-03-26 01:27:42,911] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] 01:27:42,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:27:42,913 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:42,915 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-26_01-27-42.log] [testng] 01:27:42,915 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e6d6549 - End of configuration. [testng] [2024-03-26 01:27:43,856] [pool-1-thread-1] Used files list does not include base file [testng] [2024-03-26 01:27:43,862] [pool-1-thread-12] Initializing /data/josh/2101to600e.stk: [testng] 01:27:43,863 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:27:43,863 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:43,864 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-26_01-27-43.log] [testng] 01:27:43,864 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1082d45c - End of configuration. [testng] [2024-03-26 01:27:46,688] [pool-1-thread-11] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] 01:27:46,688 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:27:46,688 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:46,689 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-26_01-27-46.log] [testng] 01:27:46,689 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f710840 - End of configuration. [testng] [2024-03-26 01:27:47,643] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] 01:27:47,643 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:27:47,643 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:47,644 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-26_01-27-47.log] [testng] 01:27:47,644 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5fb87f7f - End of configuration. [testng] [2024-03-26 01:27:48,434] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] 01:27:48,434 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:27:48,434 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:48,435 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-26_01-27-48.log] [testng] 01:27:48,435 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47cf1020 - End of configuration. [testng] [2024-03-26 01:27:49,353] [pool-1-thread-9] Used files list does not include base file [testng] [2024-03-26 01:27:49,355] [pool-1-thread-8] Initializing /data/dave/Z Series.stk: [testng] 01:27:49,355 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:27:49,355 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:49,356 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-26_01-27-49.log] [testng] 01:27:49,357 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35984f46 - End of configuration. [testng] [2024-03-26 01:27:49,954] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] 01:27:49,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:27:49,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:49,955 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-26_01-27-49.log] [testng] 01:27:49,955 |-INFO in ch.qos.logback.core.sift.SiftProcessor@721726f3 - End of configuration. [testng] [2024-03-26 01:27:50,511] [pool-1-thread-6] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] 01:27:50,512 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:27:50,512 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:50,513 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-26_01-27-50.log] [testng] 01:27:50,513 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37b07845 - End of configuration. [testng] [2024-03-26 01:27:51,130] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] 01:27:51,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:27:51,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:51,131 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-26_01-27-51.log] [testng] 01:27:51,131 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b779982 - End of configuration. [testng] [2024-03-26 01:27:51,888] [pool-1-thread-5] Used files list does not include base file [testng] [2024-03-26 01:27:51,890] [pool-1-thread-4] Initializing /data/qa-31304/Well _C6_1.tif: [testng] 01:27:51,891 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:27:51,891 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:51,891 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-26_01-27-51.log] [testng] 01:27:51,892 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3096dd59 - End of configuration. [testng] [2024-03-26 01:27:52,599] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] 01:27:52,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:27:52,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:52,601 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-26_01-27-52.log] [testng] 01:27:52,602 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fafc703 - End of configuration. [testng] [2024-03-26 01:27:53,138] [pool-1-thread-2] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] 01:27:53,139 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:27:53,139 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:53,139 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-26_01-27-53.log] [testng] 01:27:53,140 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7eb8c23a - End of configuration. [testng] [2024-03-26 01:27:59,834] [pool-1-thread-6] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:28:00,504] [pool-1-thread-8] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-03-26 01:28:01,094] [pool-1-thread-7] Initializing /data/ascb/C1 Stack.stk: [testng] [2024-03-26 01:28:01,913] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-03-26 01:28:02,682] [pool-1-thread-10] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2024-03-26 01:28:03,628] [pool-1-thread-4] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-03-26 01:28:04,247] [pool-1-thread-11] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-03-26 01:28:06,983] [pool-1-thread-6] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-03-26 01:28:09,605] [pool-1-thread-8] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-03-26 01:28:10,485] [pool-1-thread-4] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:28:10,748] [pool-1-thread-3] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-03-26 01:28:11,442] [pool-1-thread-7] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-03-26 01:28:12,215] [pool-1-thread-9] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:28:12,215] [pool-1-thread-1] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:28:12,216] [pool-1-thread-5] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:28:12,377] [pool-1-thread-10] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:28:13,294] [pool-1-thread-11] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:28:13,770] [pool-1-thread-4] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2024-03-26 01:28:14,429] [pool-1-thread-6] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2024-03-26 01:28:15,015] [pool-1-thread-10] Initializing /data/samples/zseries.stk: [testng] [2024-03-26 01:28:15,837] [pool-1-thread-9] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2024-03-26 01:28:16,545] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2024-03-26 01:28:17,397] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-03-26 01:28:17,848] [pool-1-thread-5] Used files list does not include base file [testng] [2024-03-26 01:28:17,852] [pool-1-thread-11] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-03-26 01:28:18,318] [pool-1-thread-8] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:28:18,318] [pool-1-thread-7] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:28:19,727] [pool-1-thread-3] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-03-26 01:28:21,389] [pool-1-thread-4] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:28:21,410] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-03-26 01:28:22,119] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-03-26 01:28:22,856] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-03-26 01:28:23,426] [pool-1-thread-12] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-03-26 01:28:23,498] [pool-1-thread-10] Initializing /data/steve/Experiment2.stk: [testng] [2024-03-26 01:28:24,080] [pool-1-thread-5] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:28:24,106] [pool-1-thread-4] Initializing /data/josh/2101to600f.stk: [testng] [2024-03-26 01:28:33,433] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-03-26 01:28:34,567] [pool-1-thread-5] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-03-26 01:28:35,142] [pool-1-thread-11] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:28:35,522] [pool-1-thread-2] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:28:35,546] [pool-1-thread-12] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-03-26 01:28:36,543] [pool-1-thread-8] Initializing /data/david/tl4.tif: [testng] [2024-03-26 01:28:37,959] [pool-1-thread-1] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-03-26 01:28:38,643] [pool-1-thread-10] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-03-26 01:28:39,366] [pool-1-thread-11] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-03-26 01:28:40,116] [pool-1-thread-7] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2024-03-26 01:28:40,862] [pool-1-thread-6] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-03-26 01:28:42,098] [pool-1-thread-3] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:28:43,700] [pool-1-thread-9] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-03-26 01:28:44,783] [pool-1-thread-1] Initializing /data/samples/zserEight.stk: [testng] [2024-03-26 01:28:45,143] [pool-1-thread-5] Initializing /data/aaron/metamorph.stk: [testng] [2024-03-26 01:28:45,596] [pool-1-thread-12] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:28:46,366] [pool-1-thread-10] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-26 01:28:47,068] [pool-1-thread-11] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:28:48,709] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-03-26 01:28:49,066] [pool-1-thread-7] Initializing /data/samples/zser24.stk: [testng] [2024-03-26 01:28:49,827] [pool-1-thread-9] Initializing /data/alex/Selected FITC.stk: [testng] [2024-03-26 01:28:50,296] [pool-1-thread-1] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2024-03-26 01:29:07,873] [pool-1-thread-2] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-03-26 01:29:08,194] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2024-03-26 01:29:08,236] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-26 01:29:09,129] [pool-1-thread-12] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] [2024-03-26 01:29:09,607] [pool-1-thread-8] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-03-26 01:29:09,972] [pool-1-thread-10] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:29:10,193] [pool-1-thread-6] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:29:10,738] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-03-26 01:29:11,551] [pool-1-thread-7] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-03-26 01:29:13,142] [pool-1-thread-10] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-03-26 01:29:13,907] [pool-1-thread-9] Initializing /data/samples/diatoms3d.stk: [testng] [2024-03-26 01:29:14,162] [pool-1-thread-5] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:29:14,166] [pool-1-thread-3] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] [2024-03-26 01:29:16,945] [pool-1-thread-12] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2024-03-26 01:29:17,330] [pool-1-thread-2] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:29:17,611] [pool-1-thread-8] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] [2024-03-26 01:29:18,573] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-26 01:29:18,926] [pool-1-thread-9] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-03-26 01:29:19,357] [pool-1-thread-11] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2024-03-26 01:29:19,954] [pool-1-thread-2] Initializing /data/samples/10xcalib.tif: [testng] [2024-03-26 01:29:20,576] [pool-1-thread-12] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-03-26 01:29:21,183] [pool-1-thread-8] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-03-26 01:29:21,540] [pool-1-thread-8] Used files list does not include base file [testng] [2024-03-26 01:29:22,472] [pool-1-thread-11] Initializing /data/ascb/RNA dye MT 2.tif: [testng] [2024-03-26 01:29:22,934] [pool-1-thread-5] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:29:22,934] [pool-1-thread-9] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:29:23,113] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-26 01:29:24,410] [pool-1-thread-8] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:29:24,499] [pool-1-thread-10] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:29:24,848] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-03-26 01:29:25,192] [pool-1-thread-9] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-03-26 01:29:25,538] [pool-1-thread-12] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:29:26,141] [pool-1-thread-6] Initializing /data/josh/2101to400astk.stk: [testng] [2024-03-26 01:29:29,772] [pool-1-thread-8] Initializing /data/qa-16887/m-01.tif: [testng] [2024-03-26 01:29:30,972] [pool-1-thread-11] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2024-03-26 01:29:31,852] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-03-26 01:29:32,229] [pool-1-thread-12] Used files list does not include base file [testng] [2024-03-26 01:29:32,231] [pool-1-thread-10] Initializing /data/sebastien-besson/A._WTChlor.2.nd_[Stage1__Position52_]/A. WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-03-26 01:29:32,965] [pool-1-thread-2] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:29:34,109] [pool-1-thread-9] Initializing /data/chris/exp1_w2CSU RED_s3_t003.stk: [testng] [2024-03-26 01:29:34,494] [pool-1-thread-11] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:29:34,509] [pool-1-thread-5] Initializing /data/jacek/YFP2trans.tif: [testng] [2024-03-26 01:29:34,895] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2024-03-26 01:29:35,315] [pool-1-thread-2] Used files list does not include base file [testng] [2024-03-26 01:29:36,071] [pool-1-thread-12] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:29:36,540] [pool-1-thread-11] Initializing /data/heiko/sample_3x3.stk: [testng] [2024-03-26 01:29:37,536] [pool-1-thread-8] Initializing /data/samples/10xcalib.stk: [testng] [2024-03-26 01:29:38,058] [pool-1-thread-12] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-03-26 01:29:38,654] [pool-1-thread-9] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-03-26 01:29:39,880] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-03-26 01:29:42,628] [pool-1-thread-8] Initializing /data/josh/2101to600b.stk: [testng] [2024-03-26 01:29:45,797] [pool-1-thread-4] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-03-26 01:29:46,072] [pool-1-thread-11] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2024-03-26 01:29:46,916] [pool-1-thread-9] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:29:46,933] [pool-1-thread-12] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:29:47,376] [pool-1-thread-5] Initializing /data/cumol-test-series/23.001: [testng] [2024-03-26 01:29:47,835] [pool-1-thread-2] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:29:47,916] [pool-1-thread-10] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:29:48,143] [pool-1-thread-7] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:29:48,654] [pool-1-thread-9] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-03-26 01:29:49,435] [pool-1-thread-4] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:29:49,451] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-03-26 01:29:49,892] [pool-1-thread-12] Used files list does not include base file [testng] [2024-03-26 01:29:49,912] [pool-1-thread-11] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] [2024-03-26 01:29:50,399] [pool-1-thread-2] Initializing /data/chris/test2_w2_s1_t1.stk: [testng] [2024-03-26 01:29:51,665] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2024-03-26 01:29:52,037] [pool-1-thread-4] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2024-03-26 01:29:53,422] [pool-1-thread-7] Initializing /data/josh/2101to600astk.stk: [testng] [2024-03-26 01:30:06,079] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.tif: [testng] [2024-03-26 01:30:06,814] [pool-1-thread-12] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:30:07,602] [pool-1-thread-11] Initializing /data/ascb/golgi marker.tif: [testng] [2024-03-26 01:30:08,049] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] [2024-03-26 01:30:08,601] [pool-1-thread-9] Used files list does not include base file [testng] [2024-03-26 01:30:08,633] [pool-1-thread-12] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2024-03-26 01:30:13,726] [pool-1-thread-10] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-03-26 01:30:15,192] [pool-1-thread-5] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2024-03-26 01:30:17,288] [pool-1-thread-2] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2024-03-26 01:30:17,688] [pool-1-thread-11] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-26 01:30:18,115] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-03-26 01:30:19,602] [pool-1-thread-10] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:30:19,905] [pool-1-thread-2] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:30:19,997] [pool-1-thread-6] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-03-26 01:30:22,137] [pool-1-thread-4] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2024-03-26 01:30:23,298] [pool-1-thread-2] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2024-03-26 01:30:23,815] [pool-1-thread-11] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:30:23,837] [pool-1-thread-10] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-03-26 01:30:24,707] [pool-1-thread-9] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:30:25,616] [pool-1-thread-11] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-03-26 01:30:26,935] [pool-1-thread-9] Initializing /data/steve/Experiment2.tif: [testng] [2024-03-26 01:30:27,441] [pool-1-thread-10] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:30:27,441] [pool-1-thread-2] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:30:28,454] [pool-1-thread-10] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-03-26 01:30:28,877] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-03-26 01:30:29,291] [pool-1-thread-2] Initializing /data/jerome/deconv.STK: [testng] [2024-03-26 01:30:30,002] [pool-1-thread-11] Initializing /data/qa-16915/m-04.tif: [testng] [2024-03-26 01:30:32,648] [pool-1-thread-9] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-03-26 01:30:34,456] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-26 01:30:35,566] [pool-1-thread-10] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-26 01:30:36,088] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2024-03-26 01:30:36,665] [pool-1-thread-8] Used files list does not include base file [testng] [2024-03-26 01:30:38,928] [pool-1-thread-10] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:30:39,002] [pool-1-thread-2] Initializing /data/josh/2101to800.stk: [testng] [2024-03-26 01:30:41,574] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] [2024-03-26 01:30:42,279] [pool-1-thread-11] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] [2024-03-26 01:30:43,496] [pool-1-thread-9] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:30:43,655] [pool-1-thread-10] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2024-03-26 01:30:46,181] [pool-1-thread-9] Initializing /data/graham/G_Wright raw.stk: [testng] [2024-03-26 01:30:47,230] [pool-1-thread-11] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-26 01:30:47,728] [pool-1-thread-8] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:30:47,761] [pool-1-thread-6] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-03-26 01:30:49,243] [pool-1-thread-4] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:30:51,017] [pool-1-thread-10] Initializing /data/thomas/test.tif: [testng] [2024-03-26 01:30:51,603] [pool-1-thread-9] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-03-26 01:30:52,013] [pool-1-thread-8] Initializing /data/qa-16915/m-02.tif: [testng] [2024-03-26 01:30:53,346] [pool-1-thread-4] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-03-26 01:30:55,187] [pool-1-thread-12] Initializing /data/qa-16915/m-01-488.ome.tif: [testng] [2024-03-26 01:30:56,148] [pool-1-thread-11] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:30:57,811] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2024-03-26 01:30:58,323] [pool-1-thread-11] Used files list does not include base file [testng] [2024-03-26 01:30:58,325] [pool-1-thread-5] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:30:58,347] [pool-1-thread-9] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] [2024-03-26 01:31:03,064] [pool-1-thread-10] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] [2024-03-26 01:31:05,344] [pool-1-thread-12] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-03-26 01:31:06,502] [pool-1-thread-8] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-03-26 01:31:07,552] [pool-1-thread-2] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-03-26 01:31:10,121] [pool-1-thread-5] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-03-26 01:31:11,398] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2024-03-26 01:31:11,778] [pool-1-thread-8] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:31:12,022] [pool-1-thread-12] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-03-26 01:31:16,809] [pool-1-thread-10] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:31:17,729] [pool-1-thread-11] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:31:17,779] [pool-1-thread-6] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:31:17,927] [pool-1-thread-5] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:31:18,033] [pool-1-thread-8] Initializing /data/qa-16915/m-02-561.ome.tif: [testng] [2024-03-26 01:31:19,228] [pool-1-thread-6] Initializing /data/grant/X.STK: [testng] [2024-03-26 01:31:19,680] [pool-1-thread-10] Initializing /data/samples/zserSixteen.stk: [testng] [2024-03-26 01:31:20,257] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-03-26 01:31:21,215] [pool-1-thread-11] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-03-26 01:31:22,314] [pool-1-thread-6] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:31:22,707] [pool-1-thread-10] Initializing /data/josh/EditedMovies/2101to400a.stk: [testng] [2024-03-26 01:31:25,095] [pool-1-thread-8] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] [2024-03-26 01:31:25,892] [pool-1-thread-6] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment5_w1DUAL 491-561_t1.TIF: [testng] [2024-03-26 01:31:28,147] [pool-1-thread-5] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:31:28,976] [pool-1-thread-11] Initializing /data/tristan/data IJM/mw3_z/MDA_z_MW3(GFP_RFP_GLP)_w3GLP.TIF: [testng] [2024-03-26 01:31:30,172] [pool-1-thread-5] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-03-26 01:31:31,661] [pool-1-thread-8] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] [2024-03-26 01:31:33,013] [pool-1-thread-5] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:31:33,287] [pool-1-thread-11] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:31:33,545] [pool-1-thread-2] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-03-26 01:31:34,200] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-03-26 01:31:34,878] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif: [testng] [2024-03-26 01:31:36,293] [pool-1-thread-11] Initializing /data/grant/XYZ_Image.STK: [testng] [2024-03-26 01:31:37,415] [pool-1-thread-2] Initializing /data/thomas/t_test2001.tif: [testng] [2024-03-26 01:31:38,428] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-03-26 01:31:39,006] [pool-1-thread-5] Used files list does not include base file [testng] [2024-03-26 01:31:39,616] [pool-1-thread-8] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-03-26 01:31:40,015] [pool-1-thread-8] Used files list does not include base file [testng] [2024-03-26 01:31:40,016] [pool-1-thread-11] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:31:41,301] [pool-1-thread-2] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-03-26 01:31:41,940] [pool-1-thread-11] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] [2024-03-26 01:31:47,924] [pool-1-thread-10] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-03-26 01:31:48,396] [pool-1-thread-9] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-03-26 01:31:49,925] [pool-1-thread-8] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:31:50,563] [pool-1-thread-5] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:31:50,940] [pool-1-thread-8] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-03-26 01:31:51,368] [pool-1-thread-10] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:31:51,943] [pool-1-thread-2] Initializing /data/josh/2101to400bstk.stk: [testng] [2024-03-26 01:32:05,460] [pool-1-thread-9] Initializing /data/ascb/mt mklp1.tif: [testng] [2024-03-26 01:32:05,859] [pool-1-thread-7] Initializing /data/qa-16915/m-04-488.tif: [testng] [2024-03-26 01:32:06,867] [pool-1-thread-5] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2024-03-26 01:32:07,454] [pool-1-thread-10] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-03-26 01:32:11,468] [pool-1-thread-6] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:32:12,379] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-03-26 01:32:13,259] [pool-1-thread-8] Used files list does not include base file [testng] [2024-03-26 01:32:13,259] [pool-1-thread-5] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:32:13,911] [pool-1-thread-9] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-03-26 01:32:14,914] [pool-1-thread-7] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2024-03-26 01:32:15,384] [pool-1-thread-4] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:32:15,705] [pool-1-thread-5] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-03-26 01:32:16,613] [pool-1-thread-6] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-03-26 01:32:17,927] [pool-1-thread-7] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:32:18,147] [pool-1-thread-9] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-03-26 01:32:20,805] [pool-1-thread-7] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-03-26 01:32:21,245] [pool-1-thread-6] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:32:21,935] [pool-1-thread-5] Initializing /data/qa-30870/220209_posit5.tif: [testng] [2024-03-26 01:32:22,926] [pool-1-thread-6] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-03-26 01:32:23,367] [pool-1-thread-8] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:32:23,391] [pool-1-thread-4] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-03-26 01:32:25,128] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-03-26 01:32:25,937] [pool-1-thread-8] Initializing /data/qa-16915/m-01.tif: [testng] [2024-03-26 01:32:27,336] [pool-1-thread-5] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] [2024-03-26 01:32:27,828] [pool-1-thread-4] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-03-26 01:32:28,382] [pool-1-thread-4] Used files list does not include base file [testng] [2024-03-26 01:32:28,927] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-03-26 01:32:30,641] [pool-1-thread-6] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-03-26 01:32:31,914] [pool-1-thread-5] Initializing /data/jae/RGB_s34.tif: [testng] [2024-03-26 01:32:32,695] [pool-1-thread-7] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:32:33,277] [pool-1-thread-8] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-03-26 01:32:34,355] [pool-1-thread-7] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-03-26 01:32:37,393] [pool-1-thread-6] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:32:37,897] [pool-1-thread-8] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:32:39,011] [pool-1-thread-6] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-03-26 01:32:39,448] [pool-1-thread-6] Used files list does not include base file [testng] [2024-03-26 01:32:39,450] [pool-1-thread-8] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-03-26 01:32:39,782] [pool-1-thread-5] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2024-03-26 01:32:40,094] [pool-1-thread-4] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:32:41,693] [pool-1-thread-9] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:32:41,956] [pool-1-thread-4] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-03-26 01:32:42,623] [pool-1-thread-5] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-03-26 01:32:42,974] [pool-1-thread-8] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-03-26 01:32:45,189] [pool-1-thread-9] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-03-26 01:32:46,900] [pool-1-thread-4] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-03-26 01:32:48,800] [pool-1-thread-5] Initializing /data/ascb/mt aim.tif: [testng] [2024-03-26 01:32:49,456] [pool-1-thread-7] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-03-26 01:32:52,950] [pool-1-thread-6] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:32:52,981] [pool-1-thread-9] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:32:53,198] [pool-1-thread-4] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:32:54,249] [pool-1-thread-5] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-03-26 01:32:54,586] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-03-26 01:32:55,132] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-26 01:32:55,755] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-03-26 01:32:58,479] [pool-1-thread-5] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-03-26 01:33:02,154] [pool-1-thread-9] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-03-26 01:33:03,359] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-03-26 01:33:04,137] [pool-1-thread-6] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:33:06,490] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-03-26 01:33:07,502] [pool-1-thread-8] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:33:08,640] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-03-26 01:33:09,444] [pool-1-thread-9] Used files list does not include base file [testng] [2024-03-26 01:33:10,213] [pool-1-thread-3] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:33:12,660] [pool-1-thread-10] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:33:13,432] [pool-1-thread-11] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:33:16,896] [pool-1-thread-9] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 01:34:06,518] [pool-1-thread-1] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 02:17:04,364] [pool-1-thread-12] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 82, Skips: 0 [testng] =============================================== [testng] [testng] The tests failed. BUILD FAILED /bio-formats-build/bioformats/components/test-suite/build.xml:270: if=failedTest Total time: 63 minutes 11 seconds Build step 'Execute shell' marked build as failure Finished: FAILURE