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Started by upstream project "BIOFORMATS-test-repo" build number 120 originally caused by: Started by upstream project "Trigger" build number 137 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins11686924760471752895.sh + '[' avi = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_18755_merge_ci -v /uod/idr/repos/curated/avi:/data -v /uod/idr-scratch/merge-ci/curated/avi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:57:44,086 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:57:44,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:57:44,138 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:57:44,138 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:57:44,144 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:57:44,145 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:57:44,145 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:57:44,145 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:57:44,145 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5e600dd5 - End of configuration. [testng] 01:57:44,146 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@a38c7fe - Registering current configuration as safe fallback point [testng] 01:57:44,146 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6fdbe764 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 372 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-14 01:57:44,156] [main] java.version = 17.0.2 [testng] 01:57:44,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:57:44,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:57:44,344 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-14_01-57-44.log] [testng] 01:57:44,346 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-07-14 01:57:44,357] [main] testng.directory = /data [testng] [2024-07-14 01:57:44,357] [main] testng.configDirectory = /config [testng] [2024-07-14 01:57:44,421] [main] testng.multiplier = 1.0 [testng] [2024-07-14 01:57:44,422] [main] testng.in-memory = false [testng] [2024-07-14 01:57:44,422] [main] testng.allow-missing = false [testng] [2024-07-14 01:57:44,422] [main] user.language = en [testng] [2024-07-14 01:57:44,422] [main] user.country = ${user.country} [testng] [2024-07-14 01:57:44,422] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-07-14 01:57:45,334] [main] ---------------------------------------- [testng] [2024-07-14 01:57:45,334] [main] Total files: 40 [testng] [2024-07-14 01:57:45,334] [main] Scan time: 0.911 s (22 ms/file) [testng] [2024-07-14 01:57:45,334] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 38 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-14 02:01:55,741] [pool-1-thread-1] Initializing /data/william/worm.avi: [testng] 02:01:55,742 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:01:55,742 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:01:55,743 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-14_02-01-55.log] [testng] 02:01:55,744 |-INFO in ch.qos.logback.core.sift.SiftProcessor@105e97c1 - End of configuration. [testng] [2024-07-14 02:01:55,765] [pool-1-thread-12] Initializing /data/kurt/40x_6um.avi: [testng] 02:01:55,765 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:01:55,765 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:01:55,766 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-14_02-01-55.log] [testng] 02:01:55,766 |-INFO in ch.qos.logback.core.sift.SiftProcessor@565eb738 - End of configuration. [testng] [2024-07-14 02:01:55,834] [pool-1-thread-11] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_4.avi: [testng] 02:01:55,834 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:01:55,834 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:01:55,835 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-14_02-01-55.log] [testng] 02:01:55,835 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48cf576e - End of configuration. [testng] [2024-07-14 02:01:55,849] [pool-1-thread-10] Initializing /data/qa-7336/2X_63X-DAPI-Emilin2_Filter_Render_Series.avi: [testng] 02:01:55,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:01:55,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:01:55,850 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-14_02-01-55.log] [testng] 02:01:55,851 |-INFO in ch.qos.logback.core.sift.SiftProcessor@386fd62d - End of configuration. [testng] [2024-07-14 02:01:55,894] [pool-1-thread-9] Initializing /data/qa-5019/nemo-2_1_.avi: [testng] 02:01:55,895 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:01:55,895 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:01:55,895 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-14_02-01-55.log] [testng] 02:01:55,896 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ae9cfab - End of configuration. [testng] [2024-07-14 02:01:55,932] [pool-1-thread-8] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_3.avi: [testng] 02:01:55,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:01:55,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:01:55,933 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-14_02-01-55.log] [testng] 02:01:55,933 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d182e78 - End of configuration. [testng] [2024-07-14 02:01:55,954] [pool-1-thread-7] Initializing /data/roger/spheroid1-crop.lsm movie 2.avi: [testng] 02:01:55,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:01:55,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:01:55,955 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-14_02-01-55.log] [testng] 02:01:55,955 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ec61678 - End of configuration. [testng] [2024-07-14 02:01:56,021] [pool-1-thread-6] Initializing /data/kurt/63x_6um.avi: [testng] 02:01:56,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:01:56,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:01:56,022 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-14_02-01-56.log] [testng] 02:01:56,022 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642045b5 - End of configuration. [testng] [2024-07-14 02:01:56,082] [pool-1-thread-5] Initializing /data/roger/spheroid1-crop.lsm movie.avi: [testng] 02:01:56,082 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:01:56,082 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:01:56,083 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-14_02-01-56.log] [testng] 02:01:56,083 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61b7cb83 - End of configuration. [testng] [2024-07-14 02:01:56,118] [pool-1-thread-4] Initializing /data/qa-5019/nemo-2_10_20.avi: [testng] 02:01:56,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:01:56,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:01:56,119 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-14_02-01-56.log] [testng] 02:01:56,119 |-INFO in ch.qos.logback.core.sift.SiftProcessor@264bedb1 - End of configuration. [testng] [2024-07-14 02:01:56,144] [pool-1-thread-3] Initializing /data/chris/APZ04_009.avi: [testng] 02:01:56,144 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:01:56,144 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:01:56,145 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-14_02-01-56.log] [testng] 02:01:56,145 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65f21d80 - End of configuration. [testng] [2024-07-14 02:01:57,459] [pool-1-thread-2] Initializing /data/chip_avi/Level004-WA-116.avi: [testng] 02:01:57,459 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:01:57,459 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:01:57,460 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-14_02-01-57.log] [testng] 02:01:57,460 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a780815 - End of configuration. [testng] [2024-07-14 02:01:59,024] [pool-1-thread-11] Initializing /data/qa-11011/M-flow10001.avi: [testng] [2024-07-14 02:01:59,154] [pool-1-thread-7] Initializing /data/chip_avi/Level001-ES-083.avi: [testng] [2024-07-14 02:01:59,166] [pool-1-thread-1] Initializing /data/roger/op9middle40x.lsm movie.avi: [testng] [2024-07-14 02:01:59,188] [pool-1-thread-8] Initializing /data/jae/20xD_5minfor14h.avi: [testng] [2024-07-14 02:01:59,285] [pool-1-thread-2] Initializing /data/ascb/TIRF.avi: [testng] [2024-07-14 02:01:59,318] [pool-1-thread-4] Initializing /data/chip_avi/Level002-DB-090.avi: [testng] [2024-07-14 02:01:59,332] [pool-1-thread-9] Initializing /data/qa-7560/Ex9 ALADIN WT KO KI_DIC_ 31_07_2013_M1.avi: [testng] [2024-07-14 02:01:59,839] [pool-1-thread-5] Initializing /data/kurt/40x_6um_2.avi: [testng] [2024-07-14 02:01:59,959] [pool-1-thread-12] Initializing /data/curtis/mri-stack-ij-new.avi: [testng] [2024-07-14 02:02:00,044] [pool-1-thread-10] Initializing /data/qa-4232/11051920xdrywithincubatoronthenoff_Subset.avi: [testng] [2024-07-14 02:02:00,285] [pool-1-thread-6] Initializing /data/roger/op9middle40x.lsm movie 3.avi: [testng] [2024-07-14 02:02:00,307] [pool-1-thread-12] Initializing /data/jules/GUV_long15N_10_20mb_debut_25102011_1_BW.avi: [testng] [2024-07-14 02:02:00,327] [pool-1-thread-7] Initializing /data/simon/24_bit_problem.avi: [testng] [2024-07-14 02:02:00,366] [pool-1-thread-4] Initializing /data/prairie/cornea dc and macs.AVI: [testng] [2024-07-14 02:02:00,878] [pool-1-thread-1] Initializing /data/roger/op9middle40x.lsm movie 4.avi: [testng] [2024-07-14 02:02:01,131] [pool-1-thread-10] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_5.avi: [testng] [2024-07-14 02:02:01,197] [pool-1-thread-12] Initializing /data/curtis/mri-stack-bf.avi: [testng] [2024-07-14 02:02:01,260] [pool-1-thread-2] Initializing /data/pki/yinghua_USPI2-ASMKT772_111017100001_C10_f1.avi: [testng] [2024-07-14 02:02:01,554] [pool-1-thread-6] Initializing /data/qa-7450/MVI_3610.AVI: [testng] [2024-07-14 02:02:01,687] [pool-1-thread-7] Initializing /data/jules/GUV_long15N_10_10mb_debut_26102011_4.avi: [testng] [2024-07-14 02:02:03,076] [pool-1-thread-10] Initializing /data/chip_avi/Level003-DB-089.avi: [testng] [2024-07-14 02:02:03,093] [pool-1-thread-12] Initializing /data/sample-avis/rgb-odd-width/HyperStack.avi: [testng] [2024-07-14 02:02:03,255] [pool-1-thread-5] Initializing /data/curtis/mri-stack-ij-old.avi: [testng] [2024-07-14 02:02:03,350] [pool-1-thread-11] Initializing /data/sample-avis/extra-chunk/HyperStack.avi: [testng] [2024-07-14 02:02:03,389] [pool-1-thread-12] Initializing /data/roger/op9middle40x.lsm movie 2.avi: [testng] [2024-07-14 02:02:03,500] [pool-1-thread-8] Initializing /data/roger/spheroid1.lsm movie.avi: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 2014, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 4 minutes 38 seconds Finished: SUCCESS