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Started by upstream project "BIOFORMATS-test-repo" build number 121 originally caused by: Started by upstream project "Trigger" build number 138 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins16906057843323686239.sh + '[' bmp = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_18858_merge_ci -v /uod/idr/repos/curated/bmp:/data -v /uod/idr-scratch/merge-ci/curated/bmp:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:24:45,234 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:24:45,236 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:24:45,236 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:24:45,237 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:24:45,237 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:24:45,238 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:24:45,238 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:24:45,238 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:24:45,238 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:24:45,239 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:24:45,239 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:24:45,239 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:24:45,479 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:24:45,479 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:24:45,508 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:24:45,508 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:24:45,517 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:24:45,517 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:24:45,517 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:24:45,517 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:24:45,518 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:24:45,518 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:24:45,519 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 281 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-15 01:24:45,529] [main] java.version = 1.8.0_342 [testng] 01:24:45,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:24:45,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:45,580 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-15_01-24-45.log] [testng] 01:24:45,583 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-07-15 01:24:45,587] [main] testng.directory = /data [testng] [2024-07-15 01:24:45,588] [main] testng.configDirectory = /config [testng] [2024-07-15 01:24:45,607] [main] testng.multiplier = 1.0 [testng] [2024-07-15 01:24:45,607] [main] testng.in-memory = false [testng] [2024-07-15 01:24:45,607] [main] testng.allow-missing = false [testng] [2024-07-15 01:24:45,608] [main] user.language = fr [testng] [2024-07-15 01:24:45,608] [main] user.country = FR [testng] [2024-07-15 01:24:45,608] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-07-15 01:24:46,127] [main] ---------------------------------------- [testng] [2024-07-15 01:24:46,127] [main] Total files: 31 [testng] [2024-07-15 01:24:46,127] [main] Scan time: 0.519 s (16 ms/file) [testng] [2024-07-15 01:24:46,128] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 31 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-15 01:24:48,227] [pool-1-thread-2] Initializing /data/curtis/image5.bmp: [testng] 01:24:48,228 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:24:48,228 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:48,231 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-15_01-24-48.log] [testng] 01:24:48,232 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e04baf1 - End of configuration. [testng] [2024-07-15 01:24:48,259] [pool-1-thread-12] Initializing /data/dennis/kidney_TFl_Five.bmp: [testng] 01:24:48,260 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:24:48,260 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:48,278 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-15_01-24-48.log] [testng] 01:24:48,279 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b1f9fe8 - End of configuration. [testng] [2024-07-15 01:24:48,293] [pool-1-thread-11] Initializing /data/ticket-12971/foo.bmp: [testng] 01:24:48,294 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:24:48,294 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:48,295 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-15_01-24-48.log] [testng] 01:24:48,296 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3597ecc4 - End of configuration. [testng] [2024-07-15 01:24:48,307] [pool-1-thread-8] Initializing /data/brian/images/kidney_TFl_1_greyscale.bmp: [testng] 01:24:48,308 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:24:48,308 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:48,309 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-15_01-24-48.log] [testng] 01:24:48,310 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14ec3f25 - End of configuration. [testng] [2024-07-15 01:24:48,325] [pool-1-thread-10] Initializing /data/brian/images/raw_a.bmp: [testng] 01:24:48,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:24:48,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:48,326 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-15_01-24-48.log] [testng] 01:24:48,326 |-INFO in ch.qos.logback.core.sift.SiftProcessor@aaa2127 - End of configuration. [testng] [2024-07-15 01:24:48,342] [pool-1-thread-9] Initializing /data/big-images/6kx6k.bmp: [testng] 01:24:48,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:24:48,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:48,344 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-15_01-24-48.log] [testng] 01:24:48,345 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77fa9af0 - End of configuration. [testng] [2024-07-15 01:24:48,363] [pool-1-thread-7] Initializing /data/brian/images/23srp5dksub.bmp: [testng] 01:24:48,364 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:24:48,364 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:48,375 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-15_01-24-48.log] [testng] 01:24:48,377 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28541b46 - End of configuration. [testng] [2024-07-15 01:24:48,402] [pool-1-thread-6] Initializing /data/curtis/image3.bmp: [testng] 01:24:48,402 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:24:48,403 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:48,405 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-15_01-24-48.log] [testng] 01:24:48,406 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28379f6f - End of configuration. [testng] [2024-07-15 01:24:48,425] [pool-1-thread-5] Initializing /data/big-images/6kx6k-grey.bmp: [testng] 01:24:48,426 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:24:48,426 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:48,427 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-15_01-24-48.log] [testng] 01:24:48,428 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25dfb2b5 - End of configuration. [testng] [2024-07-15 01:24:48,453] [pool-1-thread-4] Initializing /data/big-images/8kx8k.bmp: [testng] 01:24:48,454 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:24:48,454 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:48,456 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-15_01-24-48.log] [testng] 01:24:48,457 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37d4b1c5 - End of configuration. [testng] [2024-07-15 01:24:48,484] [pool-1-thread-3] Initializing /data/dennis/kidney_TFl_One.bmp: [testng] 01:24:48,484 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:24:48,484 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:48,485 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-15_01-24-48.log] [testng] 01:24:48,485 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f80843a - End of configuration. [testng] [2024-07-15 01:24:48,495] [pool-1-thread-1] Initializing /data/bk/ch_00.bmp: [testng] 01:24:48,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:24:48,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:48,497 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-15_01-24-48.log] [testng] 01:24:48,497 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6205bb4f - End of configuration. [testng] [2024-07-15 01:24:50,628] [pool-1-thread-3] Initializing /data/curtis/image1.bmp: [testng] [2024-07-15 01:24:50,634] [pool-1-thread-6] Initializing /data/stephane/holo0908.bmp: [testng] [2024-07-15 01:24:50,665] [pool-1-thread-12] Initializing /data/dennis/kidney_TFl_Eight.bmp: [testng] [2024-07-15 01:24:50,688] [pool-1-thread-8] Initializing /data/dennis/kidney_TFl_Seven.bmp: [testng] [2024-07-15 01:24:50,696] [pool-1-thread-11] Initializing /data/curtis/image2.bmp: [testng] [2024-07-15 01:24:50,704] [pool-1-thread-2] Initializing /data/dennis/kidney_TFl_Six.bmp: [testng] [2024-07-15 01:24:50,718] [pool-1-thread-10] Initializing /data/big-images/8kx8k-grey.bmp: [testng] [2024-07-15 01:24:50,726] [pool-1-thread-7] Initializing /data/dennis/kidney_TFl_Three.bmp: [testng] [2024-07-15 01:24:50,732] [pool-1-thread-1] Initializing /data/frank/cell_mask_error.bmp: [testng] [2024-07-15 01:24:51,381] [pool-1-thread-3] Initializing /data/brian/images/raw_a_rg.tiff: [testng] [2024-07-15 01:24:51,435] [pool-1-thread-11] Initializing /data/brian/images/DMSOHigh_001.bmp: [testng] [2024-07-15 01:24:51,990] [pool-1-thread-1] Initializing /data/dennis/kidney_TFl_Two.bmp: [testng] [2024-07-15 01:24:52,036] [pool-1-thread-12] Initializing /data/brian/images/raw_a_rg.bmp: [testng] [2024-07-15 01:24:52,098] [pool-1-thread-8] Initializing /data/dennis/kidney_TFl_Four.bmp: [testng] [2024-07-15 01:24:52,103] [pool-1-thread-7] Initializing /data/curtis/image4.bmp: [testng] [2024-07-15 01:24:52,123] [pool-1-thread-2] Initializing /data/dennis/kidney_TFl_Nine.bmp: [testng] [2024-07-15 01:24:52,328] [pool-1-thread-7] Initializing /data/bk/100427RBTLPC_FD3__A___5_T_001_ch_00_image_00025_Z_001.bmp: [testng] [2024-07-15 01:24:52,397] [pool-1-thread-12] Initializing /data/qa-4538/22577136_Figure 2_A_ATF6 (GST)_13572.bmp: [testng] [2024-07-15 01:24:52,449] [pool-1-thread-11] Initializing /data/brian/images/kidney_TFl_1.bmp: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1643, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 29 seconds Finished: SUCCESS