![[Jenkins]](/jenkins/static/90204047/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 122 originally caused by: Started by upstream project "Trigger" build number 139 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins3054135861083807416.sh + '[' olympus-oir = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_19008_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:20:25,666 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:20:25,669 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 01:20:25,669 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:20:25,670 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:20:25,671 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:20:25,671 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:20:25,672 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:20:25,672 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:20:25,672 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:20:25,673 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:20:25,674 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:20:25,674 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:20:25,878 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:20:25,878 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:20:25,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:20:25,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:20:25,916 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:20:25,917 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:20:25,917 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:20:25,917 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:20:25,918 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 01:20:25,919 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 01:20:25,919 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 247 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-16 01:20:25,932] [main] java.version = 11.0.16 [testng] 01:20:25,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:20:25,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:25,992 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-16_01-20-25.log] [testng] 01:20:25,994 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-07-16 01:20:25,997] [main] testng.directory = /data [testng] [2024-07-16 01:20:25,997] [main] testng.configDirectory = /config [testng] [2024-07-16 01:20:26,010] [main] testng.multiplier = 1.0 [testng] [2024-07-16 01:20:26,012] [main] testng.in-memory = false [testng] [2024-07-16 01:20:26,013] [main] testng.allow-missing = false [testng] [2024-07-16 01:20:26,013] [main] user.language = en [testng] [2024-07-16 01:20:26,013] [main] user.country = ${user.country} [testng] [2024-07-16 01:20:26,013] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-07-16 01:20:41,035] [main] ---------------------------------------- [testng] [2024-07-16 01:20:41,035] [main] Total files: 283 [testng] [2024-07-16 01:20:41,035] [main] Scan time: 15.022 s (53 ms/file) [testng] [2024-07-16 01:20:41,035] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 186 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-16 01:29:13,877] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif: [testng] 01:29:13,878 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:29:13,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:13,882 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-16_01-29-13.log] [testng] 01:29:13,883 |-INFO in ch.qos.logback.core.sift.SiftProcessor@370b56 - End of configuration. [testng] [2024-07-16 01:29:13,960] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi: [testng] 01:29:13,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:29:13,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:13,962 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-16_01-29-13.log] [testng] 01:29:13,962 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f45f3b0 - End of configuration. [testng] [2024-07-16 01:29:13,996] [pool-1-thread-11] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif: [testng] 01:29:13,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:29:13,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:13,998 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-16_01-29-13.log] [testng] 01:29:13,999 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2adb52a1 - End of configuration. [testng] [2024-07-16 01:29:14,100] [pool-1-thread-10] Initializing /data/qa-16881/P10D1 20150729.ome.tif: [testng] 01:29:14,101 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:29:14,101 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:14,102 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-16_01-29-14.log] [testng] 01:29:14,102 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d307d33 - End of configuration. [testng] [2024-07-16 01:29:14,219] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif: [testng] 01:29:14,219 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:29:14,219 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:14,220 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-16_01-29-14.log] [testng] 01:29:14,220 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19a5bb92 - End of configuration. [testng] [2024-07-16 01:29:14,304] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir: [testng] 01:29:14,304 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:29:14,304 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:14,305 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-16_01-29-14.log] [testng] 01:29:14,306 |-INFO in ch.qos.logback.core.sift.SiftProcessor@333492ef - End of configuration. [testng] [2024-07-16 01:29:14,453] [pool-1-thread-7] Initializing /data/qa-17270/Clipboard-alexa488.tif: [testng] 01:29:14,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:29:14,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:14,454 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-16_01-29-14.log] [testng] 01:29:14,454 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43d7abdf - End of configuration. [testng] [2024-07-16 01:29:14,539] [pool-1-thread-6] Initializing /data/qa-17335/1.ome.tif: [testng] 01:29:14,540 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:29:14,540 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:14,540 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-16_01-29-14.log] [testng] 01:29:14,541 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d2f3092 - End of configuration. [testng] [2024-07-16 01:29:14,609] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif: [testng] 01:29:14,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:29:14,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:14,609 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-16_01-29-14.log] [testng] 01:29:14,610 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2242491e - End of configuration. [testng] [2024-07-16 01:29:15,526] [pool-1-thread-4] Initializing /data/qa-17409/Clipboard.tif: [testng] 01:29:15,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:29:15,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:15,528 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-16_01-29-15.log] [testng] 01:29:15,528 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cd7cd23 - End of configuration. [testng] [2024-07-16 01:29:15,604] [pool-1-thread-3] Initializing /data/public/etienne/amy slice z stack_0001.oir: [testng] 01:29:15,604 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:29:15,604 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:15,605 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-16_01-29-15.log] [testng] 01:29:15,606 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52fce96c - End of configuration. [testng] [2024-07-16 01:29:15,858] [pool-1-thread-2] Initializing /data/qa-17270/image1.ome.tif: [testng] 01:29:15,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:29:15,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:15,859 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-16_01-29-15.log] [testng] 01:29:15,859 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62caf382 - End of configuration. [testng] [2024-07-16 01:29:17,775] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir: [testng] [2024-07-16 01:29:17,890] [pool-1-thread-12] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir: [testng] [2024-07-16 01:29:18,088] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif: [testng] [2024-07-16 01:29:18,323] [pool-1-thread-4] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif: [testng] [2024-07-16 01:29:18,410] [pool-1-thread-10] Initializing /data/olympus/Clipboard-XYZt.tif: [testng] [2024-07-16 01:29:18,611] [pool-1-thread-6] Initializing /data/olympus/XYZt.oir: [testng] [2024-07-16 01:29:19,995] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif: [testng] [2024-07-16 01:29:20,124] [pool-1-thread-5] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif: [testng] [2024-07-16 01:29:20,242] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir: [testng] [2024-07-16 01:29:20,402] [pool-1-thread-8] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif: [testng] [2024-07-16 01:29:20,485] [pool-1-thread-7] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png: [testng] [2024-07-16 01:29:20,876] [pool-1-thread-3] Initializing /data/qa-17335/stimulation_0001_LSM.oir: [testng] [2024-07-16 01:29:21,336] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir: [testng] [2024-07-16 01:29:22,006] [pool-1-thread-11] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif: [testng] [2024-07-16 01:29:22,455] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif: [testng] [2024-07-16 01:29:22,504] [pool-1-thread-2] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir: [testng] [2024-07-16 01:29:22,690] [pool-1-thread-12] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir: [testng] [2024-07-16 01:29:22,767] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi: [testng] [2024-07-16 01:29:22,876] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif: [testng] [2024-07-16 01:29:22,920] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif: [testng] [2024-07-16 01:29:22,967] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif: [testng] [2024-07-16 01:29:23,401] [pool-1-thread-8] Initializing /data/qa-17335/Clipboard-OSR-Z.tif: [testng] [2024-07-16 01:29:24,028] [pool-1-thread-11] Initializing /data/qa-17917/f10010.oir: [testng] [2024-07-16 01:29:50,585] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif: [testng] [2024-07-16 01:29:50,686] [pool-1-thread-3] Initializing /data/olympus/40X_4CH_XY.vsi: [testng] [2024-07-16 01:29:50,792] [pool-1-thread-1] Initializing /data/qa-16881/P10-50 D2.ome.tif: [testng] [2024-07-16 01:29:50,902] [pool-1-thread-5] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif: [testng] [2024-07-16 01:29:50,953] [pool-1-thread-2] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir: [testng] [2024-07-16 01:29:51,050] [pool-1-thread-9] Initializing /data/olympus/Stitched_XYZ.ome.tif: [testng] [2024-07-16 01:29:51,144] [pool-1-thread-4] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir: [testng] [2024-07-16 01:29:51,346] [pool-1-thread-10] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif: [testng] [2024-07-16 01:29:51,750] [pool-1-thread-12] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir: [testng] [2024-07-16 01:29:52,173] [pool-1-thread-8] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir: [testng] [2024-07-16 01:29:52,467] [pool-1-thread-7] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir: [testng] [2024-07-16 01:29:53,454] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif: [testng] [2024-07-16 01:29:53,625] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif: [testng] [2024-07-16 01:29:53,765] [pool-1-thread-4] Initializing /data/olympus/calcium sparks.jpg: [testng] [2024-07-16 01:29:53,922] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif: [testng] [2024-07-16 01:29:54,014] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir: [testng] [2024-07-16 01:29:54,651] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir: [testng] [2024-07-16 01:29:55,047] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir: [testng] [2024-07-16 01:29:55,919] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif: [testng] [2024-07-16 01:29:56,051] [pool-1-thread-1] Initializing /data/olympus/XYZt.ome.tif: [testng] [2024-07-16 01:29:56,327] [pool-1-thread-10] Initializing /data/public/etienne/Clipboard-venus stack.tif: [testng] [2024-07-16 01:29:56,694] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif: [testng] [2024-07-16 01:29:57,016] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif: [testng] [2024-07-16 01:29:57,643] [pool-1-thread-5] Initializing /data/qa-16881/P10D1 20150729.oir: [testng] [2024-07-16 01:29:57,886] [pool-1-thread-4] Initializing /data/qa-16881/P10D1 20150729_0019.oir: [testng] [2024-07-16 01:29:58,311] [pool-1-thread-6] Initializing /data/qa-17919/f10187.oir: [testng] [2024-07-16 01:30:15,318] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi: [testng] [2024-07-16 01:30:15,501] [pool-1-thread-9] Initializing /data/qa-17331/60x zstack RS.oir: [testng] [2024-07-16 01:30:15,691] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir: [testng] [2024-07-16 01:30:15,999] [pool-1-thread-3] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir: [testng] [2024-07-16 01:30:16,390] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif: [testng] [2024-07-16 01:30:17,153] [pool-1-thread-4] Initializing /data/olympus/spectral_scan_XYL.ome.tif: [testng] [2024-07-16 01:30:17,279] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif: [testng] [2024-07-16 01:30:17,393] [pool-1-thread-1] Initializing /data/olympus/XYZt.vsi: [testng] [2024-07-16 01:30:17,717] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif: [testng] [2024-07-16 01:30:17,805] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/Clipboard.tif: [testng] [2024-07-16 01:30:17,863] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif: [testng] [2024-07-16 01:30:18,149] [pool-1-thread-12] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif: [testng] [2024-07-16 01:30:18,358] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif: [testng] [2024-07-16 01:30:18,678] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir: [testng] [2024-07-16 01:30:18,867] [pool-1-thread-5] Initializing /data/olympus/40X_4CH_XY.oir: [testng] [2024-07-16 01:30:19,240] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir: [testng] [2024-07-16 01:30:19,921] [pool-1-thread-10] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir: [testng] [2024-07-16 01:30:20,141] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir: [testng] [2024-07-16 01:30:20,373] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif: [testng] [2024-07-16 01:30:20,610] [pool-1-thread-1] Initializing /data/qa-16871/XY_0003.ome.tif: [testng] [2024-07-16 01:30:21,083] [pool-1-thread-9] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif: [testng] [2024-07-16 01:30:21,192] [pool-1-thread-4] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir: [testng] [2024-07-16 01:30:21,554] [pool-1-thread-3] Initializing /data/qa-17270/Clipboard-stack1.tif: [testng] [2024-07-16 01:30:21,827] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir: [testng] [2024-07-16 01:30:21,914] [pool-1-thread-1] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif: [testng] [2024-07-16 01:30:22,316] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif: [testng] [2024-07-16 01:30:22,559] [pool-1-thread-10] Initializing /data/qa-16881/P10D1 20150729_0024.oir: [testng] [2024-07-16 01:30:22,764] [pool-1-thread-9] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif: [testng] [2024-07-16 01:30:22,846] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir: [testng] [2024-07-16 01:30:22,935] [pool-1-thread-5] Initializing /data/qa-17335/OSR-Z.oir: [testng] [2024-07-16 01:30:23,023] [pool-1-thread-12] Initializing /data/qa-17335/OSR-Z.ome.tif: [testng] [2024-07-16 01:30:23,154] [pool-1-thread-3] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir: [testng] [2024-07-16 01:30:36,718] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif: [testng] [2024-07-16 01:30:37,105] [pool-1-thread-2] Initializing /data/olympus/Stitched_XYZ.vsi: [testng] [2024-07-16 01:30:37,131] [pool-1-thread-7] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir: [testng] [2024-07-16 01:30:37,319] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif: [testng] [2024-07-16 01:30:37,638] [pool-1-thread-5] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir: [testng] [2024-07-16 01:30:38,027] [pool-1-thread-12] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info: [testng] [2024-07-16 01:30:39,885] [pool-1-thread-10] Initializing /data/public/etienne/coupe shg stack_0001.oir: [testng] [2024-07-16 01:30:40,082] [pool-1-thread-1] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif: [testng] [2024-07-16 01:30:40,266] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif: [testng] [2024-07-16 01:30:40,321] [pool-1-thread-2] Initializing /data/public/etienne/venus stack.oir: [testng] [2024-07-16 01:30:40,819] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif: [testng] [2024-07-16 01:30:40,901] [pool-1-thread-9] Initializing /data/qa-17270/alexa488.oir: [testng] [2024-07-16 01:30:41,202] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif: [testng] [2024-07-16 01:30:41,595] [pool-1-thread-8] Initializing /data/qa-17331/60x zstack RS.ome.tif: [testng] [2024-07-16 01:30:41,852] [pool-1-thread-7] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif: [testng] [2024-07-16 01:30:42,182] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi: [testng] [2024-07-16 01:30:42,342] [pool-1-thread-1] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir: [testng] [2024-07-16 01:30:42,644] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir: [testng] [2024-07-16 01:30:42,906] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif: [testng] [2024-07-16 01:30:43,574] [pool-1-thread-8] Initializing /data/qa-17409/Stitch_A01_G001.oir: [testng] [2024-07-16 01:30:43,959] [pool-1-thread-9] Initializing /data/olympus/2017-04-20/Clipboard.tif: [testng] [2024-07-16 01:30:44,154] [pool-1-thread-7] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir: [testng] [2024-07-16 01:30:44,704] [pool-1-thread-2] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif: [testng] [2024-07-16 01:30:44,775] [pool-1-thread-4] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir: [testng] [2024-07-16 01:30:45,074] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif: [testng] [2024-07-16 01:30:45,527] [pool-1-thread-8] testPixelsHashes: FAILED (series 0, md5 6a7670ae841e8d5e50e1059b48d8c0dd, expected e8ab9632b15dd4bf5daee4f34fd3d7ad or null) [testng] [2024-07-16 01:30:45,807] [pool-1-thread-5] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets: [testng] [2024-07-16 01:30:45,870] [pool-1-thread-9] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif: [testng] [2024-07-16 01:30:45,941] [pool-1-thread-8] testSubimagePixelsHashes: FAILED (series 0, md5 36693fa4cad7950d9e7da2142edd5011, expected 00411f728d57e70ea4083f16b98552b2 or null) [testng] [2024-07-16 01:30:46,331] [pool-1-thread-1] Initializing /data/qa-17922/example_multipart.oir: [testng] [2024-07-16 01:31:05,630] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif: [testng] [2024-07-16 01:31:05,752] [pool-1-thread-4] Initializing /data/qa-17293/Clipboard.tif: [testng] [2024-07-16 01:31:05,814] [pool-1-thread-10] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info: [testng] [2024-07-16 01:31:08,222] [pool-1-thread-5] Initializing /data/qa-17335/1.oir: [testng] [2024-07-16 01:31:08,606] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif: [testng] [2024-07-16 01:31:08,779] [pool-1-thread-2] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir: [testng] [2024-07-16 01:31:08,822] [pool-1-thread-8] testUnflattenedPixelsHashes: FAILED (series 0, resolution 0) [testng] [2024-07-16 01:31:15,467] [pool-1-thread-4] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif: [testng] [2024-07-16 01:31:15,522] [pool-1-thread-7] Initializing /data/qa-17331/Clipboard.tif: [testng] [2024-07-16 01:31:15,690] [pool-1-thread-5] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif: [testng] [2024-07-16 01:31:16,185] [pool-1-thread-8] testUnflattenedSubimagePixelsHashes: FAILED (series 0, resolution 0, md5 36693fa4cad7950d9e7da2142edd5011, expected 00411f728d57e70ea4083f16b98552b2 or null) [testng] [2024-07-16 01:31:16,220] [pool-1-thread-8] Initializing /data/public/etienne/venus stack.ome.tif: [testng] [2024-07-16 01:31:16,581] [pool-1-thread-9] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir: [testng] [2024-07-16 01:32:38,759] [pool-1-thread-4] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif: [testng] [2024-07-16 01:32:38,902] [pool-1-thread-7] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir: [testng] [2024-07-16 01:32:39,212] [pool-1-thread-5] Initializing /data/qa-17270/alexa488.ome.tif: [testng] [2024-07-16 01:32:39,910] [pool-1-thread-8] Initializing /data/qa-21508/Stitch_A01_G008.oir: [testng] [2024-07-16 01:32:40,470] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif: [testng] [2024-07-16 01:32:41,320] [pool-1-thread-5] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif: [testng] [2024-07-16 01:32:41,620] [pool-1-thread-4] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif: [testng] [2024-07-16 01:32:41,804] [pool-1-thread-7] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir: [testng] [2024-07-16 01:32:43,204] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif: [testng] [2024-07-16 01:32:43,395] [pool-1-thread-4] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir: [testng] [2024-07-16 01:32:45,148] [pool-1-thread-5] Initializing /data/olympus/Stitched_XYZ.oir: [testng] [2024-07-16 01:32:46,519] [pool-1-thread-7] Initializing /data/qa-17270/stack1.ome.tif: [testng] [2024-07-16 01:32:47,899] [pool-1-thread-5] Initializing /data/cudmore/20190401__0005.oir: [testng] [2024-07-16 01:32:52,040] [pool-1-thread-7] Initializing /data/olympus/calcium sparks_XYt.oir: [testng] [2024-07-16 01:32:55,292] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif: [testng] [2024-07-16 01:32:55,753] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif: [testng] [2024-07-16 01:32:56,242] [pool-1-thread-3] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif: [testng] [2024-07-16 01:32:56,413] [pool-1-thread-7] Initializing /data/qa-16881/P10-50 D2_0019.oir: [testng] [2024-07-16 01:32:56,992] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif: [testng] [2024-07-16 01:32:57,539] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif: [testng] [2024-07-16 01:32:57,743] [pool-1-thread-7] Initializing /data/qa-17270/stack1.oir: [testng] [2024-07-16 01:32:59,467] [pool-1-thread-4] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets: [testng] [2024-07-16 01:32:59,622] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir: [testng] [2024-07-16 01:33:00,392] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif: [testng] [2024-07-16 01:33:01,648] [pool-1-thread-3] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif: [testng] [2024-07-16 01:33:01,704] [pool-1-thread-4] Initializing /data/qa-16881/P10-50 D2.oir: [testng] [2024-07-16 01:33:02,837] [pool-1-thread-3] Initializing /data/qa-16871/XY_0003.oir: [testng] [2024-07-16 01:33:02,957] [pool-1-thread-4] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif: [testng] [2024-07-16 01:33:03,608] [pool-1-thread-3] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif: [testng] [2024-07-16 01:33:04,619] [pool-1-thread-3] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info: [testng] [2024-07-16 01:33:06,525] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif: [testng] [2024-07-16 01:33:06,670] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif: [testng] [2024-07-16 01:33:07,203] [pool-1-thread-7] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif: [testng] [2024-07-16 01:33:07,287] [pool-1-thread-4] Initializing /data/olympus/40X_4CH_XY.ome.tif: [testng] [2024-07-16 01:33:07,352] [pool-1-thread-3] Initializing /data/qa-17270/Clipboard-image1.tif: [testng] [2024-07-16 01:33:07,658] [pool-1-thread-2] Initializing /data/olympus/calcium sparks_XYt.ome.tif: [testng] [2024-07-16 01:33:08,010] [pool-1-thread-8] Initializing /data/qa-17293/2-z-t_0001_LSM.oir: [testng] [2024-07-16 01:33:08,583] [pool-1-thread-3] Initializing /data/qa-17270/image1.oir: [testng] [2024-07-16 01:33:09,064] [pool-1-thread-8] Initializing /data/qa-16871/Clipboard.tif: [testng] [2024-07-16 01:33:09,679] [pool-1-thread-2] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif: [testng] [2024-07-16 01:33:09,768] [pool-1-thread-10] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif: [testng] [2024-07-16 01:33:10,191] [pool-1-thread-8] Initializing /data/qa-17335/Clipboard-1.tif: [testng] [2024-07-16 01:33:10,423] [pool-1-thread-12] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info: [testng] [2024-07-16 01:33:12,904] [pool-1-thread-3] Initializing /data/qa-16881/P10-50 D2_0006.oir: [testng] [2024-07-16 01:33:13,336] [pool-1-thread-10] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir: [testng] [2024-07-16 01:33:13,800] [pool-1-thread-4] Initializing /data/olympus/spectral_scan_XYL.oir: [testng] [2024-07-16 01:33:14,169] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif: [testng] [2024-07-16 01:33:14,217] [pool-1-thread-2] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif: [testng] [2024-07-16 01:33:14,582] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir: [testng] [2024-07-16 01:33:14,770] [pool-1-thread-4] testPixelsHashes: FAILED (series 0, md5 1f9673a0661c965d8218a45a48d11e24, expected cf9d7c68ecbb24a10f47ed168012aa8c or null) [testng] [2024-07-16 01:33:15,120] [pool-1-thread-3] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir: [testng] [2024-07-16 01:33:15,262] [pool-1-thread-4] testSubimagePixelsHashes: FAILED (series 0, md5 1f9673a0661c965d8218a45a48d11e24, expected cf9d7c68ecbb24a10f47ed168012aa8c or null) [testng] [2024-07-16 01:33:15,538] [pool-1-thread-7] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif: [testng] [2024-07-16 01:33:15,776] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif: [testng] [2024-07-16 01:33:16,196] [pool-1-thread-4] testUnflattenedPixelsHashes: FAILED (series 0, resolution 0) [testng] [2024-07-16 01:33:16,311] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/zebra shg.oir: [testng] [2024-07-16 01:33:21,838] [pool-1-thread-10] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif: [testng] [2024-07-16 01:33:22,310] [pool-1-thread-4] testUnflattenedSubimagePixelsHashes: FAILED (series 0, resolution 0, md5 1f9673a0661c965d8218a45a48d11e24, expected cf9d7c68ecbb24a10f47ed168012aa8c or null) [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 9858, Failures: 8, Skips: 0 [testng] =============================================== [testng] [testng] The tests failed. BUILD FAILED /bio-formats-build/bioformats/components/test-suite/build.xml:270: if=failedTest Total time: 46 minutes 38 seconds Build step 'Execute shell' marked build as failure Finished: FAILURE