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Started by upstream project "BIOFORMATS-test-repo" build number 122 originally caused by: Started by upstream project "Trigger" build number 139 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins11481882886718995067.sh + '[' pict = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_19048_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:29:40,435 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:29:40,437 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 01:29:40,437 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:29:40,438 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:29:40,438 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:29:40,439 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:29:40,439 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:29:40,439 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:29:40,439 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:29:40,440 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:29:40,440 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:29:40,441 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:29:40,620 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:29:40,620 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:29:40,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:29:40,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:29:40,651 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:29:40,651 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:29:40,651 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:29:40,652 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:29:40,652 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 01:29:40,653 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 01:29:40,653 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 214 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-16 01:29:40,662] [main] java.version = 11.0.16 [testng] 01:29:40,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:29:40,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:40,710 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-16_01-29-40.log] [testng] 01:29:40,712 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-07-16 01:29:40,715] [main] testng.directory = /data [testng] [2024-07-16 01:29:40,715] [main] testng.configDirectory = /config [testng] [2024-07-16 01:29:40,726] [main] testng.multiplier = 1.0 [testng] [2024-07-16 01:29:40,727] [main] testng.in-memory = false [testng] [2024-07-16 01:29:40,727] [main] testng.allow-missing = false [testng] [2024-07-16 01:29:40,727] [main] user.language = en [testng] [2024-07-16 01:29:40,727] [main] user.country = ${user.country} [testng] [2024-07-16 01:29:40,727] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-07-16 01:29:41,110] [main] ---------------------------------------- [testng] [2024-07-16 01:29:41,111] [main] Total files: 25 [testng] [2024-07-16 01:29:41,111] [main] Scan time: 0.382 s (15 ms/file) [testng] [2024-07-16 01:29:41,111] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-16 01:29:42,632] [pool-1-thread-1] Initializing /data/misc/swlogo.pict: [testng] 01:29:42,633 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:29:42,633 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:42,635 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-16_01-29-42.log] [testng] 01:29:42,635 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7401e2ee - End of configuration. [testng] [2024-07-16 01:29:42,660] [pool-1-thread-12] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] 01:29:42,661 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:29:42,661 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:42,662 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-16_01-29-42.log] [testng] 01:29:42,662 |-INFO in ch.qos.logback.core.sift.SiftProcessor@340f8108 - End of configuration. [testng] [2024-07-16 01:29:42,672] [pool-1-thread-11] Initializing /data/misc/planet.png: [testng] 01:29:42,672 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:29:42,672 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:42,673 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-16_01-29-42.log] [testng] 01:29:42,673 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d477949 - End of configuration. [testng] [2024-07-16 01:29:42,689] [pool-1-thread-10] Initializing /data/brian/images/YEL.PCT: [testng] 01:29:42,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:29:42,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:42,691 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-16_01-29-42.log] [testng] 01:29:42,691 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32f590b5 - End of configuration. [testng] [2024-07-16 01:29:42,718] [pool-1-thread-9] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] 01:29:42,718 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:29:42,718 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:42,722 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-16_01-29-42.log] [testng] 01:29:42,723 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d4134f4 - End of configuration. [testng] [2024-07-16 01:29:42,881] [pool-1-thread-8] Initializing /data/brian/images/FLAG_RGB.pct: [testng] 01:29:42,881 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:29:42,882 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:42,882 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-16_01-29-42.log] [testng] 01:29:42,883 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7487962c - End of configuration. [testng] [2024-07-16 01:29:42,892] [pool-1-thread-7] Initializing /data/brian/images/WHT.PCT: [testng] 01:29:42,892 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:29:42,892 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:42,893 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-16_01-29-42.log] [testng] 01:29:42,893 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ea79b7a - End of configuration. [testng] [2024-07-16 01:29:42,908] [pool-1-thread-6] Initializing /data/brian/images/BLK.PCT: [testng] 01:29:42,908 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:29:42,908 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:42,909 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-16_01-29-42.log] [testng] 01:29:42,909 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55babd9c - End of configuration. [testng] [2024-07-16 01:29:42,923] [pool-1-thread-5] Initializing /data/brian/images/GRN.PCT: [testng] 01:29:42,924 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:29:42,924 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:42,924 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-16_01-29-42.log] [testng] 01:29:42,925 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15db29f6 - End of configuration. [testng] [2024-07-16 01:29:42,939] [pool-1-thread-4] Initializing /data/jqd/mireSixteen.pict: [testng] 01:29:42,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:29:42,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:42,940 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-16_01-29-42.log] [testng] 01:29:42,940 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f9e93dc - End of configuration. [testng] [2024-07-16 01:29:42,947] [pool-1-thread-3] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] 01:29:42,947 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:29:42,947 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:42,948 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-16_01-29-42.log] [testng] 01:29:42,948 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fbede5e - End of configuration. [testng] [2024-07-16 01:29:42,965] [pool-1-thread-2] Initializing /data/jqd/sixteenBit.pict: [testng] 01:29:42,966 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:29:42,966 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:42,967 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-16_01-29-42.log] [testng] 01:29:42,967 |-INFO in ch.qos.logback.core.sift.SiftProcessor@578bd8d3 - End of configuration. [testng] [2024-07-16 01:29:44,650] [pool-1-thread-4] Initializing /data/brian/images/TRU256.PCT: [testng] [2024-07-16 01:29:44,663] [pool-1-thread-1] Initializing /data/brian/images/VENUS.pct: [testng] [2024-07-16 01:29:44,683] [pool-1-thread-12] Initializing /data/brian/images/BLU.PCT: [testng] [2024-07-16 01:29:44,708] [pool-1-thread-8] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] [2024-07-16 01:29:44,746] [pool-1-thread-11] Initializing /data/misc/planet.pict: [testng] [2024-07-16 01:29:44,767] [pool-1-thread-2] Initializing /data/jqd/32bit.pict: [testng] [2024-07-16 01:29:44,789] [pool-1-thread-5] Initializing /data/brian/images/FLAG_B32.pct: [testng] [2024-07-16 01:29:44,800] [pool-1-thread-6] Initializing /data/jqd/mire32.pict: [testng] [2024-07-16 01:29:44,811] [pool-1-thread-7] Initializing /data/brian/images/RED.PCT: [testng] [2024-07-16 01:29:44,828] [pool-1-thread-10] Initializing /data/brian/images/MARBLES_B32.pct: [testng] [2024-07-16 01:29:45,310] [pool-1-thread-3] Initializing /data/misc/planet2.pict: [testng] [2024-07-16 01:29:45,345] [pool-1-thread-6] Initializing /data/wayne/PotatoMeristem.pict: [testng] [2024-07-16 01:29:45,375] [pool-1-thread-7] Initializing /data/brian/images/FLAG_B24.PCT: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 9 seconds Finished: SUCCESS