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Started by upstream project "BIOFORMATS-test-repo" build number 122 originally caused by: Started by upstream project "Trigger" build number 139 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins17849095347848085875.sh + '[' psd = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_19130_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 02:26:28,446 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:26:28,448 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 02:26:28,448 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:26:28,449 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:26:28,450 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:26:28,450 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:26:28,451 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:26:28,451 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:26:28,451 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:26:28,452 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:26:28,452 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:26:28,453 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:26:28,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:26:28,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:26:28,679 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:26:28,680 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:26:28,686 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:26:28,687 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:26:28,687 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:26:28,687 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:26:28,687 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 02:26:28,689 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 02:26:28,689 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 238 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-16 02:26:28,699] [main] java.version = 11.0.16 [testng] 02:26:28,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:26:28,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:28,746 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-16_02-26-28.log] [testng] 02:26:28,748 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-07-16 02:26:28,751] [main] testng.directory = /data [testng] [2024-07-16 02:26:28,751] [main] testng.configDirectory = /config [testng] [2024-07-16 02:26:28,762] [main] testng.multiplier = 1.0 [testng] [2024-07-16 02:26:28,763] [main] testng.in-memory = false [testng] [2024-07-16 02:26:28,763] [main] testng.allow-missing = false [testng] [2024-07-16 02:26:28,763] [main] user.language = en [testng] [2024-07-16 02:26:28,763] [main] user.country = ${user.country} [testng] [2024-07-16 02:26:28,764] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-07-16 02:26:29,232] [main] ---------------------------------------- [testng] [2024-07-16 02:26:29,232] [main] Total files: 18 [testng] [2024-07-16 02:26:29,232] [main] Scan time: 0.468 s (26 ms/file) [testng] [2024-07-16 02:26:29,232] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-16 02:26:30,691] [pool-1-thread-1] Initializing /data/qa-4117/caspase gel-1.psd: [testng] 02:26:30,693 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:26:30,694 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:30,697 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-16_02-26-30.log] [testng] 02:26:30,697 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6001633c - End of configuration. [testng] [2024-07-16 02:26:30,727] [pool-1-thread-12] Initializing /data/misc/glossy_buttons.psd: [testng] 02:26:30,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:26:30,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:30,730 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-16_02-26-30.log] [testng] 02:26:30,730 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3fd98929 - End of configuration. [testng] [2024-07-16 02:26:30,744] [pool-1-thread-11] Initializing /data/misc/smilie.psd: [testng] 02:26:30,744 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:26:30,744 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:30,745 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-16_02-26-30.log] [testng] 02:26:30,745 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35f7bff0 - End of configuration. [testng] [2024-07-16 02:26:30,759] [pool-1-thread-10] Initializing /data/ascb/423.psd: [testng] 02:26:30,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:26:30,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:30,760 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-16_02-26-30.log] [testng] 02:26:30,761 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2fbfde13 - End of configuration. [testng] [2024-07-16 02:26:30,803] [pool-1-thread-9] Initializing /data/ascb/thin&thick fill.2.psd: [testng] 02:26:30,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:26:30,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:30,805 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-16_02-26-30.log] [testng] 02:26:30,805 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31609622 - End of configuration. [testng] [2024-07-16 02:26:30,849] [pool-1-thread-8] Initializing /data/jcb/Fig5A_siHP16h.tif: [testng] 02:26:30,850 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:26:30,850 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:30,850 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-16_02-26-30.log] [testng] 02:26:30,851 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ac26724 - End of configuration. [testng] [2024-07-16 02:26:30,888] [pool-1-thread-7] Initializing /data/qa-7632/23283078__NA_NA_27343.psd: [testng] 02:26:30,888 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:26:30,888 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:30,889 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-16_02-26-30.log] [testng] 02:26:30,890 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6487c012 - End of configuration. [testng] [2024-07-16 02:26:30,943] [pool-1-thread-6] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd: [testng] 02:26:30,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:26:30,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:30,956 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-16_02-26-30.log] [testng] 02:26:30,956 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2fa7a861 - End of configuration. [testng] [2024-07-16 02:26:30,978] [pool-1-thread-5] Initializing /data/jcb/Fig5A_sip1506h.tif: [testng] 02:26:30,978 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:26:30,978 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:30,979 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-16_02-26-30.log] [testng] 02:26:30,979 |-INFO in ch.qos.logback.core.sift.SiftProcessor@196c7dfb - End of configuration. [testng] [2024-07-16 02:26:31,004] [pool-1-thread-4] Initializing /data/cris/house.tif: [testng] 02:26:31,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:26:31,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:31,007 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-16_02-26-31.log] [testng] 02:26:31,008 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6084d159 - End of configuration. [testng] [2024-07-16 02:26:31,084] [pool-1-thread-3] Initializing /data/big-images/8kx8k.psd: [testng] 02:26:31,084 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:26:31,084 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:31,085 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-16_02-26-31.log] [testng] 02:26:31,086 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1474c48e - End of configuration. [testng] [2024-07-16 02:26:31,182] [pool-1-thread-2] Initializing /data/ascb/607x.psd: [testng] 02:26:31,183 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:26:31,183 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:31,184 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-16_02-26-31.log] [testng] 02:26:31,185 |-INFO in ch.qos.logback.core.sift.SiftProcessor@254e350f - End of configuration. [testng] [2024-07-16 02:26:33,379] [pool-1-thread-4] Initializing /data/misc/vig_drawing_1.psd: [testng] [2024-07-16 02:26:33,397] [pool-1-thread-6] Initializing /data/misc/glossy_orbs.psd: [testng] [2024-07-16 02:26:33,410] [pool-1-thread-12] Initializing /data/misc/venus_composite_8bit.psd: [testng] [2024-07-16 02:26:33,438] [pool-1-thread-11] Initializing /data/jcb/Fig5A_sicont6h.tif: [testng] [2024-07-16 02:26:34,182] [pool-1-thread-8] Initializing /data/simon/colour_separated_image.psd: [testng] [2024-07-16 02:26:34,191] [pool-1-thread-1] Initializing /data/misc/venus_composite.psd: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 27 seconds Finished: SUCCESS