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Started by upstream project "BIOFORMATS-test-repo" build number 123
originally caused by:
 Started by upstream project "Trigger" build number 140
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins3543141306526051536.sh
+ '[' minc = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_19233_merge_ci -v /uod/idr/repos/curated/minc:/data -v /uod/idr-scratch/merge-ci/curated/minc:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 01:43:29,294 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 01:43:29,295 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
   [testng] 01:43:29,295 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:43:29,296 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:43:29,296 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 01:43:29,297 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 01:43:29,297 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 01:43:29,297 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:43:29,297 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:43:29,298 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 01:43:29,298 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 01:43:29,298 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 01:43:29,462 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:43:29,462 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:43:29,484 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:43:29,484 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:43:29,490 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:43:29,490 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:43:29,490 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:43:29,490 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:43:29,490 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
   [testng] 01:43:29,491 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
   [testng] 01:43:29,491 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 194 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-07-17 01:43:29,500] [main] java.version = 17.0.2
   [testng] 01:43:29,503 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:43:29,503 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:43:29,543 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-17_01-43-29.log]
   [testng] 01:43:29,545 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
   [testng] [2024-07-17 01:43:29,547] [main] testng.directory = /data
   [testng] [2024-07-17 01:43:29,547] [main] testng.configDirectory = /config
   [testng] [2024-07-17 01:43:29,555] [main] testng.multiplier = 1.0
   [testng] [2024-07-17 01:43:29,556] [main] testng.in-memory = false
   [testng] [2024-07-17 01:43:29,556] [main] testng.allow-missing = false
   [testng] [2024-07-17 01:43:29,556] [main] user.language = en
   [testng] [2024-07-17 01:43:29,557] [main] user.country = ${user.country}
   [testng] [2024-07-17 01:43:29,557] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-07-17 01:43:29,921] [main] ----------------------------------------
   [testng] [2024-07-17 01:43:29,922] [main] Total files: 15
   [testng] [2024-07-17 01:43:29,922] [main] Scan time: 0.364 s (24 ms/file)
   [testng] [2024-07-17 01:43:29,922] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 15 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-07-17 01:43:36,839] [pool-1-thread-1] Initializing /data/samples/ICBM/icbm_template_3.00mm.mnc: 
   [testng] 01:43:36,839 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:43:36,840 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:43:36,841 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-17_01-43-36.log]
   [testng] 01:43:36,842 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5be63110 - End of configuration.
   [testng] [2024-07-17 01:43:36,861] [pool-1-thread-12] Initializing /data/bigbrain/8-bit_full_400um_2009b_sym.mnc: 
   [testng] 01:43:36,861 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 01:43:36,861 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:43:36,862 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-17_01-43-36.log]
   [testng] 01:43:36,863 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71f73771 - End of configuration.
   [testng] [2024-07-17 01:43:37,812] [pool-1-thread-11] Initializing /data/bigbrain/pm6479o.mnc: 
   [testng] 01:43:37,812 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 01:43:37,812 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:43:37,814 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-17_01-43-37.log]
   [testng] 01:43:37,814 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56846ef4 - End of configuration.
   [testng] [2024-07-17 01:43:38,510] [pool-1-thread-10] Initializing /data/samples/ICBM/icbm_template_2.00mm.mnc: 
   [testng] 01:43:38,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:43:38,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:43:38,512 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-17_01-43-38.log]
   [testng] 01:43:38,512 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28780e93 - End of configuration.
   [testng] [2024-07-17 01:43:38,523] [pool-1-thread-9] Initializing /data/qa-17215/IBSR01.mnc: 
   [testng] 01:43:38,524 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:43:38,524 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:43:38,524 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-17_01-43-38.log]
   [testng] 01:43:38,525 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3cbe6f00 - End of configuration.
   [testng] [2024-07-17 01:43:38,608] [pool-1-thread-8] Initializing /data/samples/ICBM/icbm_template_4.00mm.mnc: 
   [testng] 01:43:38,608 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:43:38,608 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:43:38,609 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-17_01-43-38.log]
   [testng] 01:43:38,609 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35853015 - End of configuration.
   [testng] [2024-07-17 01:43:38,618] [pool-1-thread-7] Initializing /data/daren/test_32bit_float.mnc: 
   [testng] 01:43:38,618 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:43:38,618 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:43:38,619 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-17_01-43-38.log]
   [testng] 01:43:38,619 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b4a7fb5 - End of configuration.
   [testng] [2024-07-17 01:43:38,934] [pool-1-thread-6] Initializing /data/samples/ICBM/icbm_atlas_cerebellum_avg_53_mask_1mm.mnc: 
   [testng] 01:43:38,934 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:43:38,934 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:43:38,935 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-17_01-43-38.log]
   [testng] 01:43:38,936 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c785677 - End of configuration.
   [testng] [2024-07-17 01:43:38,978] [pool-1-thread-5] Initializing /data/samples/ICBM/icbm_template_zero.75mm.mnc: 
   [testng] 01:43:38,979 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:43:38,979 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:43:38,979 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-17_01-43-38.log]
   [testng] 01:43:38,980 |-INFO in ch.qos.logback.core.sift.SiftProcessor@134354f0 - End of configuration.
   [testng] [2024-07-17 01:43:39,015] [pool-1-thread-4] Initializing /data/samples/N3/average_305_mask_1mm.mnc: 
   [testng] 01:43:39,015 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:43:39,015 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:43:39,016 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-17_01-43-39.log]
   [testng] 01:43:39,016 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4cb40e2b - End of configuration.
   [testng] [2024-07-17 01:43:39,044] [pool-1-thread-3] Initializing /data/samples/ICBM/icbm_template_one.50mm.mnc: 
   [testng] 01:43:39,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:43:39,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:43:39,045 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-17_01-43-39.log]
   [testng] 01:43:39,046 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2720bdd8 - End of configuration.
   [testng] [2024-07-17 01:43:39,057] [pool-1-thread-2] Initializing /data/samples/ICBM/icbm_template_6.00mm.mnc: 
   [testng] 01:43:39,058 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:43:39,058 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:43:39,058 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-17_01-43-39.log]
   [testng] 01:43:39,059 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43029ae8 - End of configuration.

BUILD SUCCESSFUL
Total time: 30 seconds
Finished: SUCCESS