![[Jenkins]](/jenkins/static/d0200910/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 123 originally caused by: Started by upstream project "Trigger" build number 140 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins8475097750203501594.sh + '[' imagepro = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_19319_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:44:34,009 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:44:34,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:44:34,065 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:44:34,065 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:44:34,105 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:44:34,105 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:44:34,105 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:44:34,105 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:44:34,105 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5e600dd5 - End of configuration. [testng] 02:44:34,123 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@a38c7fe - Registering current configuration as safe fallback point [testng] 02:44:34,124 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6fdbe764 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 660 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-17 02:44:34,135] [main] java.version = 17.0.2 [testng] 02:44:34,139 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:44:34,139 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:34,265 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-17_02-44-34.log] [testng] 02:44:34,267 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-07-17 02:44:34,317] [main] testng.directory = /data [testng] [2024-07-17 02:44:34,317] [main] testng.configDirectory = /config [testng] [2024-07-17 02:44:34,587] [main] testng.multiplier = 1.0 [testng] [2024-07-17 02:44:34,588] [main] testng.in-memory = false [testng] [2024-07-17 02:44:34,588] [main] testng.allow-missing = false [testng] [2024-07-17 02:44:34,589] [main] user.language = en [testng] [2024-07-17 02:44:34,589] [main] user.country = ${user.country} [testng] [2024-07-17 02:44:34,589] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-07-17 02:44:36,720] [main] ---------------------------------------- [testng] [2024-07-17 02:44:36,720] [main] Total files: 22 [testng] [2024-07-17 02:44:36,721] [main] Scan time: 2.131 s (96 ms/file) [testng] [2024-07-17 02:44:36,721] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-17 02:44:46,245] [pool-1-thread-1] Initializing /data/converted/mitosis-test.tif: [testng] 02:44:46,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:44:46,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:46,247 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-17_02-44-46.log] [testng] 02:44:46,247 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e2ec3aa - End of configuration. [testng] [2024-07-17 02:44:46,405] [pool-1-thread-12] Initializing /data/samples/TISSUE.TIF: [testng] 02:44:46,406 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:44:46,406 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:46,406 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-17_02-44-46.log] [testng] 02:44:46,407 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d3b5cc6 - End of configuration. [testng] [2024-07-17 02:44:46,452] [pool-1-thread-11] Initializing /data/converted/NESb_C2_TP7.ipw: [testng] 02:44:46,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:44:46,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:46,454 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-17_02-44-46.log] [testng] 02:44:46,455 |-INFO in ch.qos.logback.core.sift.SiftProcessor@230e5553 - End of configuration. [testng] [2024-07-17 02:44:46,492] [pool-1-thread-10] Initializing /data/xiuwen/head2.seq: [testng] 02:44:46,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:44:46,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:46,493 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-17_02-44-46.log] [testng] 02:44:46,494 |-INFO in ch.qos.logback.core.sift.SiftProcessor@489be54f - End of configuration. [testng] [2024-07-17 02:44:46,628] [pool-1-thread-9] Initializing /data/converted/dub01.ipw: [testng] 02:44:46,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:44:46,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:46,629 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-17_02-44-46.log] [testng] 02:44:46,629 |-INFO in ch.qos.logback.core.sift.SiftProcessor@145d0579 - End of configuration. [testng] [2024-07-17 02:44:46,673] [pool-1-thread-8] Initializing /data/converted/clown.ipw: [testng] 02:44:46,674 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:44:46,674 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:46,674 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-17_02-44-46.log] [testng] 02:44:46,675 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46d075f4 - End of configuration. [testng] [2024-07-17 02:44:46,689] [pool-1-thread-7] Initializing /data/converted/NESb_C2_TP7.seq: [testng] 02:44:46,689 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:44:46,689 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:46,690 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-17_02-44-46.log] [testng] 02:44:46,691 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16f5f455 - End of configuration. [testng] [2024-07-17 02:44:46,761] [pool-1-thread-6] Initializing /data/converted/clown8c.seq: [testng] 02:44:46,761 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:44:46,761 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:46,762 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-17_02-44-46.log] [testng] 02:44:46,762 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b8b4e37 - End of configuration. [testng] [2024-07-17 02:44:46,875] [pool-1-thread-5] Initializing /data/converted/mitosis-test.ipw: [testng] 02:44:46,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:44:46,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:46,876 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-17_02-44-46.log] [testng] 02:44:46,876 |-INFO in ch.qos.logback.core.sift.SiftProcessor@cf4d45 - End of configuration. [testng] [2024-07-17 02:44:46,916] [pool-1-thread-4] Initializing /data/converted/clown.tif: [testng] 02:44:46,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:44:46,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:46,918 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-17_02-44-46.log] [testng] 02:44:46,918 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ad0ef37 - End of configuration. [testng] [2024-07-17 02:44:46,941] [pool-1-thread-3] Initializing /data/converted/clown.seq: [testng] 02:44:46,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:44:46,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:46,942 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-17_02-44-46.log] [testng] 02:44:46,943 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72742fd3 - End of configuration. [testng] [2024-07-17 02:44:46,976] [pool-1-thread-2] Initializing /data/converted/clown8c.tif: [testng] 02:44:46,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:44:46,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:46,977 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-17_02-44-46.log] [testng] 02:44:46,977 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b3adad1 - End of configuration. [testng] [2024-07-17 02:44:50,000] [pool-1-thread-2] Initializing /data/converted/dub01.seq: [testng] [2024-07-17 02:44:50,028] [pool-1-thread-12] Initializing /data/samples/HEART.SEQ: [testng] [2024-07-17 02:44:50,067] [pool-1-thread-7] Initializing /data/converted/NESb_C2_TP7.tiff: [testng] [2024-07-17 02:44:50,152] [pool-1-thread-9] Initializing /data/samples/FLDUAL.TIF: [testng] [2024-07-17 02:44:50,212] [pool-1-thread-8] Initializing /data/samples/PROBE.TIF: [testng] [2024-07-17 02:44:50,232] [pool-1-thread-4] Initializing /data/converted/dub01.pic: [testng] [2024-07-17 02:44:50,260] [pool-1-thread-6] Initializing /data/converted/clown8c.ipw: [testng] [2024-07-17 02:44:50,283] [pool-1-thread-3] Initializing /data/alex/AFAset0003.ips: [testng] [2024-07-17 02:44:50,311] [pool-1-thread-1] Initializing /data/converted/mitosis-test.seq: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 41 seconds Finished: SUCCESS