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Started by upstream project "BIOFORMATS-test-repo" build number 124 originally caused by: Started by upstream project "Trigger" build number 141 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins4999002333110777272.sh + '[' hitachi = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_19341_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:22:09,185 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:22:09,187 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 01:22:09,187 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:22:09,188 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:22:09,188 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:22:09,188 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:22:09,189 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:22:09,189 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:22:09,189 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:22:09,190 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:22:09,190 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:22:09,190 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:22:09,361 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:22:09,361 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:22:09,388 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:22:09,389 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:22:09,395 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:22:09,395 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:22:09,395 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:22:09,396 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:22:09,396 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 01:22:09,397 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 01:22:09,397 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 208 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-18 01:22:09,406] [main] java.version = 21 [testng] 01:22:09,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:22:09,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:09,454 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-18_01-22-09.log] [testng] 01:22:09,456 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-07-18 01:22:09,457] [main] testng.directory = /data [testng] [2024-07-18 01:22:09,457] [main] testng.configDirectory = /config [testng] [2024-07-18 01:22:09,469] [main] testng.multiplier = 1.0 [testng] [2024-07-18 01:22:09,470] [main] testng.in-memory = false [testng] [2024-07-18 01:22:09,470] [main] testng.allow-missing = false [testng] [2024-07-18 01:22:09,470] [main] user.language = en [testng] [2024-07-18 01:22:09,470] [main] user.country = ${user.country} [testng] [2024-07-18 01:22:09,470] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-07-18 01:22:10,571] [main] ---------------------------------------- [testng] [2024-07-18 01:22:10,571] [main] Total files: 21 [testng] [2024-07-18 01:22:10,571] [main] Scan time: 1.101 s (52 ms/file) [testng] [2024-07-18 01:22:10,572] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-18 01:22:12,510] [pool-1-thread-1] Initializing /data/stefan/001_q15.txt: [testng] 01:22:12,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:22:12,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:12,512 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-18_01-22-12.log] [testng] 01:22:12,512 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5eaadf65 - End of configuration. [testng] [2024-07-18 01:22:12,563] [pool-1-thread-12] Initializing /data/stefan/001_q12.txt: [testng] 01:22:12,563 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:22:12,563 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:12,564 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-18_01-22-12.log] [testng] 01:22:12,565 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c316210 - End of configuration. [testng] [2024-07-18 01:22:12,636] [pool-1-thread-11] Initializing /data/stefan/001_q13.txt: [testng] 01:22:12,637 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:22:12,637 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:12,639 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-18_01-22-12.log] [testng] 01:22:12,639 |-INFO in ch.qos.logback.core.sift.SiftProcessor@522ef87 - End of configuration. [testng] [2024-07-18 01:22:12,715] [pool-1-thread-10] Initializing /data/stefan/001_q08.txt: [testng] 01:22:12,715 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:22:12,715 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:12,716 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-18_01-22-12.log] [testng] 01:22:12,717 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f4f4d84 - End of configuration. [testng] [2024-07-18 01:22:12,785] [pool-1-thread-9] Initializing /data/stefan/001_q06.txt: [testng] 01:22:12,786 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:22:12,786 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:12,786 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-18_01-22-12.log] [testng] 01:22:12,787 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31def202 - End of configuration. [testng] [2024-07-18 01:22:12,818] [pool-1-thread-8] Initializing /data/stefan/001_q04.txt: [testng] 01:22:12,818 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:22:12,818 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:12,818 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-18_01-22-12.log] [testng] 01:22:12,819 |-INFO in ch.qos.logback.core.sift.SiftProcessor@180ee78 - End of configuration. [testng] [2024-07-18 01:22:12,841] [pool-1-thread-7] Initializing /data/stefan/001_q03.txt: [testng] 01:22:12,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:22:12,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:12,842 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-18_01-22-12.log] [testng] 01:22:12,843 |-INFO in ch.qos.logback.core.sift.SiftProcessor@790c254f - End of configuration. [testng] [2024-07-18 01:22:12,869] [pool-1-thread-6] Initializing /data/stefan/001_q10.txt: [testng] 01:22:12,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:22:12,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:12,870 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-18_01-22-12.log] [testng] 01:22:12,871 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7dd5b8de - End of configuration. [testng] [2024-07-18 01:22:12,947] [pool-1-thread-5] Initializing /data/stefan/001_q14.txt: [testng] 01:22:12,947 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:22:12,948 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:12,949 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-18_01-22-12.log] [testng] 01:22:12,949 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63398db8 - End of configuration. [testng] [2024-07-18 01:22:12,990] [pool-1-thread-4] Initializing /data/stefan/001_q11.txt: [testng] 01:22:12,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:22:12,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:12,992 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-18_01-22-12.log] [testng] 01:22:12,992 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11ccaf - End of configuration. [testng] [2024-07-18 01:22:13,065] [pool-1-thread-3] Initializing /data/stefan/001_q18.txt: [testng] 01:22:13,065 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:22:13,065 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:13,066 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-18_01-22-13.log] [testng] 01:22:13,066 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d037862 - End of configuration. [testng] [2024-07-18 01:22:13,136] [pool-1-thread-2] Initializing /data/stefan/001_q01.txt: [testng] 01:22:13,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:22:13,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:13,137 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-18_01-22-13.log] [testng] 01:22:13,138 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ef8da72 - End of configuration. [testng] [2024-07-18 01:22:15,905] [pool-1-thread-1] Initializing /data/stefan/001_q05.txt: [testng] [2024-07-18 01:22:15,932] [pool-1-thread-8] Initializing /data/stefan/001_q17.txt: [testng] [2024-07-18 01:22:16,000] [pool-1-thread-5] Initializing /data/stefan/001_q02.txt: [testng] [2024-07-18 01:22:16,021] [pool-1-thread-11] Initializing /data/stefan/001_q07.txt: [testng] [2024-07-18 01:22:16,077] [pool-1-thread-10] Initializing /data/stefan/001_q09.txt: [testng] [2024-07-18 01:22:16,137] [pool-1-thread-6] Initializing /data/stefan/001_q16.txt: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 12 seconds Finished: SUCCESS