![[Jenkins]](/jenkins/static/d0200910/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 124 originally caused by: Started by upstream project "Trigger" build number 141 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins3392455304977683854.sh + '[' targa = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_19363_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:27:26,012 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:27:26,014 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 01:27:26,014 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:27:26,015 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:27:26,015 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:27:26,016 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:27:26,016 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:27:26,016 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:27:26,017 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:27:26,017 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:27:26,017 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:27:26,018 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:27:26,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:27:26,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:27:26,226 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:27:26,226 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:27:26,232 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:27:26,233 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:27:26,233 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:27:26,233 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:27:26,233 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 01:27:26,234 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 01:27:26,234 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 217 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-18 01:27:26,243] [main] java.version = 21 [testng] 01:27:26,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:27:26,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:26,287 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-18_01-27-26.log] [testng] 01:27:26,288 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-07-18 01:27:26,290] [main] testng.directory = /data [testng] [2024-07-18 01:27:26,290] [main] testng.configDirectory = /config [testng] [2024-07-18 01:27:26,298] [main] testng.multiplier = 1.0 [testng] [2024-07-18 01:27:26,299] [main] testng.in-memory = false [testng] [2024-07-18 01:27:26,299] [main] testng.allow-missing = false [testng] [2024-07-18 01:27:26,299] [main] user.language = en [testng] [2024-07-18 01:27:26,299] [main] user.country = ${user.country} [testng] [2024-07-18 01:27:26,299] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-07-18 01:27:26,668] [main] ---------------------------------------- [testng] [2024-07-18 01:27:26,668] [main] Total files: 21 [testng] [2024-07-18 01:27:26,668] [main] Scan time: 0.369 s (17 ms/file) [testng] [2024-07-18 01:27:26,668] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-18 01:27:27,810] [pool-1-thread-1] Initializing /data/samples/CTC16.TGA: [testng] 01:27:27,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:27:27,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:27,811 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-18_01-27-27.log] [testng] 01:27:27,812 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2cd4e82a - End of configuration. [testng] [2024-07-18 01:27:27,827] [pool-1-thread-12] Initializing /data/samples/XING_B16.TGA: [testng] 01:27:27,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:27:27,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:27,829 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-18_01-27-27.log] [testng] 01:27:27,830 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16c99b7a - End of configuration. [testng] [2024-07-18 01:27:27,841] [pool-1-thread-11] Initializing /data/samples/UBW8.TGA: [testng] 01:27:27,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:27:27,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:27,843 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-18_01-27-27.log] [testng] 01:27:27,849 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7aa824ce - End of configuration. [testng] [2024-07-18 01:27:27,864] [pool-1-thread-10] Initializing /data/samples/CBW8.TGA: [testng] 01:27:27,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:27:27,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:27,866 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-18_01-27-27.log] [testng] 01:27:27,866 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23d61918 - End of configuration. [testng] [2024-07-18 01:27:27,875] [pool-1-thread-9] Initializing /data/samples/UTC24.TGA: [testng] 01:27:27,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:27:27,876 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:27,876 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-18_01-27-27.log] [testng] 01:27:27,877 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32460097 - End of configuration. [testng] [2024-07-18 01:27:27,887] [pool-1-thread-8] Initializing /data/samples/XING_B24.TGA: [testng] 01:27:27,887 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:27:27,887 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:27,888 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-18_01-27-27.log] [testng] 01:27:27,889 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2505476 - End of configuration. [testng] [2024-07-18 01:27:27,899] [pool-1-thread-7] Initializing /data/samples/UTC32.TGA: [testng] 01:27:27,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:27:27,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:27,900 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-18_01-27-27.log] [testng] 01:27:27,901 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f2c3c45 - End of configuration. [testng] [2024-07-18 01:27:27,912] [pool-1-thread-6] Initializing /data/samples/FLAG_T32.TGA: [testng] 01:27:27,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:27:27,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:27,914 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-18_01-27-27.log] [testng] 01:27:27,914 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79bd8b34 - End of configuration. [testng] [2024-07-18 01:27:27,928] [pool-1-thread-5] Initializing /data/samples/XING_B32.TGA: [testng] 01:27:27,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:27:27,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:27,930 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-18_01-27-27.log] [testng] 01:27:27,930 |-INFO in ch.qos.logback.core.sift.SiftProcessor@699338c9 - End of configuration. [testng] [2024-07-18 01:27:27,943] [pool-1-thread-4] Initializing /data/samples/FLAG_T16.TGA: [testng] 01:27:27,944 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:27:27,944 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:27,945 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-18_01-27-27.log] [testng] 01:27:27,945 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c91393b - End of configuration. [testng] [2024-07-18 01:27:27,958] [pool-1-thread-3] Initializing /data/samples/FLAG_B32.TGA: [testng] 01:27:27,958 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:27:27,958 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:27,959 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-18_01-27-27.log] [testng] 01:27:27,960 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cc25ff0 - End of configuration. [testng] [2024-07-18 01:27:27,970] [pool-1-thread-2] Initializing /data/samples/UTC16.TGA: [testng] 01:27:27,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:27:27,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:27,971 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-18_01-27-27.log] [testng] 01:27:27,972 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a1dddc9 - End of configuration. [testng] [2024-07-18 01:27:30,163] [pool-1-thread-3] Initializing /data/samples/XING_T16.TGA: [testng] [2024-07-18 01:27:30,173] [pool-1-thread-4] Initializing /data/samples/XING_T32.TGA: [testng] [2024-07-18 01:27:30,181] [pool-1-thread-10] Initializing /data/samples/UCM8.TGA: [testng] [2024-07-18 01:27:30,187] [pool-1-thread-11] Initializing /data/samples/FLAG_B24.TGA: [testng] [2024-07-18 01:27:30,194] [pool-1-thread-6] Initializing /data/samples/CCM8.TGA: [testng] [2024-07-18 01:27:30,201] [pool-1-thread-2] Initializing /data/samples/XING_T24.TGA: [testng] [2024-07-18 01:27:30,208] [pool-1-thread-5] Initializing /data/samples/MARBLES.TGA: [testng] [2024-07-18 01:27:30,224] [pool-1-thread-8] Initializing /data/samples/CTC24.TGA: [testng] [2024-07-18 01:27:30,234] [pool-1-thread-12] Initializing /data/samples/FLAG_B16.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 8 seconds Finished: SUCCESS