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Started by upstream project "BIOFORMATS-test-repo" build number 124 originally caused by: Started by upstream project "Trigger" build number 141 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins10643371034543359290.sh + '[' biorad-gel = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_19459_merge_ci -v /uod/idr/repos/curated/biorad-gel:/data -v /uod/idr-scratch/merge-ci/curated/biorad-gel:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:25:48,348 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:25:48,350 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 02:25:48,351 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:25:48,353 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:25:48,354 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:25:48,354 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:25:48,355 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:25:48,355 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:25:48,356 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:25:48,357 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:25:48,360 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:25:48,361 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:25:48,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:25:48,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:25:48,723 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:25:48,724 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:25:48,738 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:25:48,738 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:25:48,738 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:25:48,739 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:25:48,739 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 02:25:48,743 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 02:25:48,743 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 387 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-18 02:25:48,766] [main] java.version = 21 [testng] 02:25:48,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:25:48,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:48,871 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-18_02-25-48.log] [testng] 02:25:48,875 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-07-18 02:25:48,882] [main] testng.directory = /data [testng] [2024-07-18 02:25:48,882] [main] testng.configDirectory = /config [testng] [2024-07-18 02:25:48,919] [main] testng.multiplier = 1.0 [testng] [2024-07-18 02:25:48,921] [main] testng.in-memory = false [testng] [2024-07-18 02:25:48,923] [main] testng.allow-missing = false [testng] [2024-07-18 02:25:48,923] [main] user.language = en [testng] [2024-07-18 02:25:48,924] [main] user.country = ${user.country} [testng] [2024-07-18 02:25:48,924] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-07-18 02:25:50,400] [main] ---------------------------------------- [testng] [2024-07-18 02:25:50,400] [main] Total files: 32 [testng] [2024-07-18 02:25:50,400] [main] Scan time: 1.475 s (46 ms/file) [testng] [2024-07-18 02:25:50,401] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 32 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-18 02:25:56,926] [pool-1-thread-1] Initializing /data/geert/bad example1.jpg: [testng] 02:25:56,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:25:56,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:56,931 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-18_02-25-56.log] [testng] 02:25:56,933 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d6b4237 - End of configuration. [testng] [2024-07-18 02:25:57,062] [pool-1-thread-12] Initializing /data/keith/PF020426MRSA v2.1sc: [testng] 02:25:57,063 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:25:57,063 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:57,065 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-18_02-25-57.log] [testng] 02:25:57,066 |-INFO in ch.qos.logback.core.sift.SiftProcessor@460916c - End of configuration. [testng] [2024-07-18 02:25:57,107] [pool-1-thread-11] Initializing /data/adrian/test_img.1sc: [testng] 02:25:57,108 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:25:57,108 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:57,109 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-18_02-25-57.log] [testng] 02:25:57,110 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fe2aa30 - End of configuration. [testng] [2024-07-18 02:25:57,207] [pool-1-thread-10] Initializing /data/geert/good example1.1sc: [testng] 02:25:57,208 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:25:57,208 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:57,209 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-18_02-25-57.log] [testng] 02:25:57,210 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e850dbe - End of configuration. [testng] [2024-07-18 02:25:57,287] [pool-1-thread-9] Initializing /data/geert/bad example1.1sc.jpg: [testng] 02:25:57,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:25:57,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:57,289 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-18_02-25-57.log] [testng] 02:25:57,289 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21dc7fb0 - End of configuration. [testng] [2024-07-18 02:25:57,358] [pool-1-thread-8] Initializing /data/qa-29469/bad3.1sc: [testng] 02:25:57,359 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:25:57,360 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:57,362 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-18_02-25-57.log] [testng] 02:25:57,363 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ef0a534 - End of configuration. [testng] [2024-07-18 02:25:57,472] [pool-1-thread-7] Initializing /data/david/Original Biorad Gel format file.1sc: [testng] 02:25:57,473 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:25:57,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:57,476 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-18_02-25-57.log] [testng] 02:25:57,477 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b72e81d - End of configuration. [testng] [2024-07-18 02:25:57,543] [pool-1-thread-6] Initializing /data/keith/pg020410saur3.1sc: [testng] 02:25:57,544 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:25:57,544 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:57,547 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-18_02-25-57.log] [testng] 02:25:57,549 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a246319 - End of configuration. [testng] [2024-07-18 02:25:57,580] [pool-1-thread-5] Initializing /data/geert/bad example1.1sc: [testng] 02:25:57,581 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:25:57,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:57,585 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-18_02-25-57.log] [testng] 02:25:57,587 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d0d914c - End of configuration. [testng] [2024-07-18 02:25:57,654] [pool-1-thread-4] Initializing /data/keith/PF020328saur v3.1sc: [testng] 02:25:57,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:25:57,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:57,656 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-18_02-25-57.log] [testng] 02:25:57,656 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13868849 - End of configuration. [testng] [2024-07-18 02:25:57,692] [pool-1-thread-3] Initializing /data/sylvain/2009-10-23 12hr 18min.tif: [testng] 02:25:57,693 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:25:57,693 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:57,694 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-18_02-25-57.log] [testng] 02:25:57,696 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c02ad95 - End of configuration. [testng] [2024-07-18 02:25:57,897] [pool-1-thread-2] Initializing /data/sylvain/2009-10-23 12hr 19min: [testng] 02:25:57,897 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:25:57,897 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:57,898 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-18_02-25-57.log] [testng] 02:25:57,899 |-INFO in ch.qos.logback.core.sift.SiftProcessor@387cd129 - End of configuration. [testng] [2024-07-18 02:26:01,271] [pool-1-thread-6] Initializing /data/sylvain/2009-10-23 12hr 19min.tif: [testng] [2024-07-18 02:26:01,370] [pool-1-thread-4] Initializing /data/qa-29469/bad2.1sc: [testng] [2024-07-18 02:26:01,428] [pool-1-thread-12] Initializing /data/sylvain/2009-10-26 14hr 59min.tif: [testng] [2024-07-18 02:26:01,563] [pool-1-thread-8] Initializing /data/samples/imagesEight.1sc: [testng] [2024-07-18 02:26:01,599] [pool-1-thread-7] Initializing /data/samples/Criterion.1sc: [testng] [2024-07-18 02:26:02,046] [pool-1-thread-9] Initializing /data/sylvain/2009-10-26 14hr 59min: [testng] [2024-07-18 02:26:02,377] [pool-1-thread-5] Initializing /data/sylvain/2009-10-26 14hr 57min: [testng] [2024-07-18 02:26:02,420] [pool-1-thread-10] Initializing /data/keith/test.1sc: [testng] [2024-07-18 02:26:02,615] [pool-1-thread-1] Initializing /data/keith/test2.1sc: [testng] [2024-07-18 02:26:02,638] [pool-1-thread-8] Initializing /data/sylvain/2009-10-26 14hr 57min.tif: [testng] [2024-07-18 02:26:02,794] [pool-1-thread-2] Initializing /data/qa-29459/bad.jpg: [testng] [2024-07-18 02:26:02,980] [pool-1-thread-3] Initializing /data/sylvain/2009-10-26 14hr 56min: [testng] [2024-07-18 02:26:03,030] [pool-1-thread-11] Initializing /data/qa-29459/bad.1sc: [testng] [2024-07-18 02:26:03,432] [pool-1-thread-10] Initializing /data/sylvain/2009-10-26 14hr 56min.tif: [testng] [2024-07-18 02:26:03,649] [pool-1-thread-7] Initializing /data/qa-29469/good.1sc: [testng] [2024-07-18 02:26:03,816] [pool-1-thread-2] Initializing /data/david/Converted in Quantity One (Biorad).tiff: [testng] [2024-07-18 02:26:03,930] [pool-1-thread-1] Initializing /data/qa-16880/c-src v7.1sc: [testng] [2024-07-18 02:26:04,088] [pool-1-thread-4] Initializing /data/sylvain/2009-10-23 12hr 18min: [testng] [2024-07-18 02:26:04,361] [pool-1-thread-9] Initializing /data/david/Opened in imageJ.tiff: [testng] [2024-07-18 02:26:04,466] [pool-1-thread-6] Initializing /data/geert/good example1.1sc.jpg: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1696, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 26 seconds Finished: SUCCESS