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Started by upstream project "BIOFORMATS-test-repo" build number 125 originally caused by: Started by upstream project "Trigger" build number 142 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins3386874297870882933.sh + '[' targa = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_19527_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:28:46,427 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:28:46,429 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:28:46,429 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:28:46,430 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:28:46,430 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:28:46,430 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:28:46,431 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:28:46,431 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:28:46,431 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:28:46,432 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:28:46,432 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:28:46,432 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:28:46,703 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:28:46,703 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:28:46,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:28:46,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:28:46,753 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:28:46,754 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:28:46,754 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:28:46,755 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:28:46,755 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:28:46,756 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:28:46,756 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 325 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-19 01:28:46,772] [main] java.version = 1.8.0_342 [testng] 01:28:46,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:28:46,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:28:46,830 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-19_01-28-46.log] [testng] 01:28:46,833 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-07-19 01:28:46,835] [main] testng.directory = /data [testng] [2024-07-19 01:28:46,836] [main] testng.configDirectory = /config [testng] [2024-07-19 01:28:46,850] [main] testng.multiplier = 1.0 [testng] [2024-07-19 01:28:46,851] [main] testng.in-memory = false [testng] [2024-07-19 01:28:46,851] [main] testng.allow-missing = false [testng] [2024-07-19 01:28:46,851] [main] user.language = en [testng] [2024-07-19 01:28:46,851] [main] user.country = ${user.country} [testng] [2024-07-19 01:28:46,851] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-07-19 01:28:47,497] [main] ---------------------------------------- [testng] [2024-07-19 01:28:47,497] [main] Total files: 21 [testng] [2024-07-19 01:28:47,497] [main] Scan time: 0.645 s (30 ms/file) [testng] [2024-07-19 01:28:47,498] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-19 01:28:48,818] [pool-1-thread-1] Initializing /data/samples/UTC16.TGA: [testng] 01:28:48,819 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:28:48,819 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:28:48,820 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-19_01-28-48.log] [testng] 01:28:48,821 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5610cdec - End of configuration. [testng] [2024-07-19 01:28:48,838] [pool-1-thread-12] Initializing /data/samples/UBW8.TGA: [testng] 01:28:48,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:28:48,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:28:48,839 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-19_01-28-48.log] [testng] 01:28:48,839 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c2ed27a - End of configuration. [testng] [2024-07-19 01:28:48,930] [pool-1-thread-11] Initializing /data/samples/XING_T24.TGA: [testng] 01:28:48,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:28:48,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:28:48,932 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-19_01-28-48.log] [testng] 01:28:48,933 |-INFO in ch.qos.logback.core.sift.SiftProcessor@537b1118 - End of configuration. [testng] [2024-07-19 01:28:48,948] [pool-1-thread-10] Initializing /data/samples/FLAG_T32.TGA: [testng] 01:28:48,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:28:48,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:28:48,950 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-19_01-28-48.log] [testng] 01:28:48,951 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60a8d175 - End of configuration. [testng] [2024-07-19 01:28:48,965] [pool-1-thread-9] Initializing /data/samples/FLAG_B32.TGA: [testng] 01:28:48,966 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:28:48,966 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:28:48,967 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-19_01-28-48.log] [testng] 01:28:48,968 |-INFO in ch.qos.logback.core.sift.SiftProcessor@568c8ef5 - End of configuration. [testng] [2024-07-19 01:28:48,989] [pool-1-thread-8] Initializing /data/samples/CTC24.TGA: [testng] 01:28:48,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:28:48,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:28:48,991 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-19_01-28-48.log] [testng] 01:28:48,991 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58f5c944 - End of configuration. [testng] [2024-07-19 01:28:49,004] [pool-1-thread-7] Initializing /data/samples/XING_B24.TGA: [testng] 01:28:49,004 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:28:49,004 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:28:49,005 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-19_01-28-49.log] [testng] 01:28:49,005 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69107a38 - End of configuration. [testng] [2024-07-19 01:28:49,020] [pool-1-thread-6] Initializing /data/samples/CTC16.TGA: [testng] 01:28:49,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:28:49,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:28:49,022 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-19_01-28-49.log] [testng] 01:28:49,023 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29658e9f - End of configuration. [testng] [2024-07-19 01:28:49,035] [pool-1-thread-5] Initializing /data/samples/FLAG_T16.TGA: [testng] 01:28:49,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:28:49,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:28:49,037 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-19_01-28-49.log] [testng] 01:28:49,037 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ba6644d - End of configuration. [testng] [2024-07-19 01:28:49,049] [pool-1-thread-4] Initializing /data/samples/FLAG_B24.TGA: [testng] 01:28:49,049 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:28:49,049 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:28:49,050 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-19_01-28-49.log] [testng] 01:28:49,050 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33c13708 - End of configuration. [testng] [2024-07-19 01:28:49,065] [pool-1-thread-3] Initializing /data/samples/XING_T32.TGA: [testng] 01:28:49,065 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:28:49,065 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:28:49,066 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-19_01-28-49.log] [testng] 01:28:49,067 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f7a0fd6 - End of configuration. [testng] [2024-07-19 01:28:49,080] [pool-1-thread-2] Initializing /data/samples/CBW8.TGA: [testng] 01:28:49,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:28:49,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:28:49,082 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-19_01-28-49.log] [testng] 01:28:49,082 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ef3fcc7 - End of configuration. [testng] [2024-07-19 01:28:50,720] [pool-1-thread-5] Initializing /data/samples/XING_B32.TGA: [testng] [2024-07-19 01:28:50,727] [pool-1-thread-1] Initializing /data/samples/MARBLES.TGA: [testng] [2024-07-19 01:28:50,739] [pool-1-thread-4] Initializing /data/samples/CCM8.TGA: [testng] [2024-07-19 01:28:50,747] [pool-1-thread-9] Initializing /data/samples/XING_T16.TGA: [testng] [2024-07-19 01:28:50,754] [pool-1-thread-10] Initializing /data/samples/UTC32.TGA: [testng] [2024-07-19 01:28:50,764] [pool-1-thread-6] Initializing /data/samples/XING_B16.TGA: [testng] [2024-07-19 01:28:50,780] [pool-1-thread-7] Initializing /data/samples/UCM8.TGA: [testng] [2024-07-19 01:28:50,798] [pool-1-thread-11] Initializing /data/samples/UTC24.TGA: [testng] [2024-07-19 01:28:50,810] [pool-1-thread-3] Initializing /data/samples/FLAG_B16.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 9 seconds Finished: SUCCESS