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Started by upstream project "BIOFORMATS-test-repo" build number 125 originally caused by: Started by upstream project "Trigger" build number 142 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins7196684413919995179.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_19574_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:59:49,726 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:59:49,728 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:59:49,728 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:59:49,730 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:59:49,730 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:59:49,730 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:59:49,730 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:59:49,730 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:59:49,731 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:59:49,731 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:59:49,731 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:59:49,731 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:59:49,975 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:59:49,975 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:59:50,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:59:50,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:59:50,014 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:59:50,015 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:59:50,015 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:59:50,015 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:59:50,015 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:59:50,016 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:59:50,016 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 285 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-19 01:59:50,027] [main] java.version = 1.8.0_342 [testng] 01:59:50,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:59:50,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:59:50,077 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-19_01-59-50.log] [testng] 01:59:50,079 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-07-19 01:59:50,081] [main] testng.directory = /data [testng] [2024-07-19 01:59:50,082] [main] testng.configDirectory = /config [testng] [2024-07-19 01:59:50,095] [main] testng.multiplier = 1.0 [testng] [2024-07-19 01:59:50,095] [main] testng.in-memory = false [testng] [2024-07-19 01:59:50,095] [main] testng.allow-missing = false [testng] [2024-07-19 01:59:50,095] [main] user.language = en [testng] [2024-07-19 01:59:50,095] [main] user.country = ${user.country} [testng] [2024-07-19 01:59:50,095] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-07-19 02:06:33,882] [main] ---------------------------------------- [testng] [2024-07-19 02:06:33,882] [main] Total files: 7329 [testng] [2024-07-19 02:06:33,883] [main] Scan time: 403.787 s (55 ms/file) [testng] [2024-07-19 02:06:33,883] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-19 02:09:35,797] [pool-1-thread-1] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] 02:09:35,797 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:09:35,797 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:35,798 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-19_02-09-35.log] [testng] 02:09:35,799 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ed4103 - End of configuration. [testng] [2024-07-19 02:09:35,947] [pool-1-thread-12] Initializing /data/samples/zserSixteen.stk: [testng] 02:09:35,948 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:09:35,948 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:35,948 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-19_02-09-35.log] [testng] 02:09:35,949 |-INFO in ch.qos.logback.core.sift.SiftProcessor@569ebcfb - End of configuration. [testng] [2024-07-19 02:09:35,987] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] 02:09:35,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:09:35,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:35,988 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-19_02-09-35.log] [testng] 02:09:35,989 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41454744 - End of configuration. [testng] [2024-07-19 02:09:36,060] [pool-1-thread-10] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] 02:09:36,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:09:36,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:36,061 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-19_02-09-36.log] [testng] 02:09:36,061 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b09d77e - End of configuration. [testng] [2024-07-19 02:09:36,155] [pool-1-thread-9] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] 02:09:36,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:09:36,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:36,155 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-19_02-09-36.log] [testng] 02:09:36,156 |-INFO in ch.qos.logback.core.sift.SiftProcessor@531f736a - End of configuration. [testng] [2024-07-19 02:09:36,354] [pool-1-thread-8] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] 02:09:36,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:09:36,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:36,355 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-19_02-09-36.log] [testng] 02:09:36,355 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6852f8bc - End of configuration. [testng] [2024-07-19 02:09:36,393] [pool-1-thread-7] Initializing /data/grant/XYZ_Image.STK: [testng] 02:09:36,393 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:09:36,393 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:36,394 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-19_02-09-36.log] [testng] 02:09:36,394 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c9c9034 - End of configuration. [testng] [2024-07-19 02:09:36,483] [pool-1-thread-6] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] 02:09:36,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:09:36,484 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:36,484 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-19_02-09-36.log] [testng] 02:09:36,485 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6eb39175 - End of configuration. [testng] [2024-07-19 02:09:36,596] [pool-1-thread-5] Initializing /data/ascb/C1 Stack.stk: [testng] 02:09:36,597 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:09:36,597 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:36,597 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-19_02-09-36.log] [testng] 02:09:36,598 |-INFO in ch.qos.logback.core.sift.SiftProcessor@289a6f48 - End of configuration. [testng] [2024-07-19 02:09:36,658] [pool-1-thread-4] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] 02:09:36,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:09:36,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:36,659 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-19_02-09-36.log] [testng] 02:09:36,660 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54ad0fbf - End of configuration. [testng] [2024-07-19 02:09:36,753] [pool-1-thread-3] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] 02:09:36,753 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:09:36,753 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:36,753 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-19_02-09-36.log] [testng] 02:09:36,754 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35c45b36 - End of configuration. [testng] [2024-07-19 02:09:36,927] [pool-1-thread-2] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] 02:09:36,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:09:36,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:36,928 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-19_02-09-36.log] [testng] 02:09:36,928 |-INFO in ch.qos.logback.core.sift.SiftProcessor@274ccede - End of configuration. [testng] [2024-07-19 02:09:39,474] [pool-1-thread-12] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-07-19 02:09:40,253] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-07-19 02:09:40,573] [pool-1-thread-6] Initializing /data/josh/2101to600b.stk: [testng] [2024-07-19 02:09:42,245] [pool-1-thread-4] Initializing /data/samples/10xcalib.stk: [testng] [2024-07-19 02:09:42,499] [pool-1-thread-11] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-07-19 02:09:43,226] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-07-19 02:09:43,333] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2024-07-19 02:09:43,481] [pool-1-thread-7] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-07-19 02:09:43,665] [pool-1-thread-1] Initializing /data/tristan/data IJM/mw3_z/MDA_z_MW3(GFP_RFP_GLP)_w3GLP.TIF: [testng] [2024-07-19 02:09:43,913] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-07-19 02:09:43,985] [pool-1-thread-8] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-07-19 02:09:44,534] [pool-1-thread-7] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2024-07-19 02:09:45,136] [pool-1-thread-10] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2024-07-19 02:09:45,366] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2024-07-19 02:09:45,490] [pool-1-thread-5] Used files list does not include base file [testng] [2024-07-19 02:09:45,591] [pool-1-thread-2] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-07-19 02:09:45,646] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-07-19 02:09:46,141] [pool-1-thread-7] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-07-19 02:09:47,705] [pool-1-thread-1] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-07-19 02:09:47,811] [pool-1-thread-10] Initializing /data/steve/Experiment2.tif: [testng] [2024-07-19 02:09:48,172] [pool-1-thread-3] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2024-07-19 02:09:48,397] [pool-1-thread-4] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-07-19 02:09:48,471] [pool-1-thread-4] Used files list does not include base file [testng] [2024-07-19 02:09:49,145] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-07-19 02:09:49,222] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-07-19 02:09:49,240] [pool-1-thread-10] Used files list does not include base file [testng] [2024-07-19 02:09:49,242] [pool-1-thread-3] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-07-19 02:09:49,317] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2024-07-19 02:09:49,399] [pool-1-thread-5] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-07-19 02:09:49,730] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-07-19 02:09:49,776] [pool-1-thread-10] Used files list does not include base file [testng] [2024-07-19 02:09:49,814] [pool-1-thread-11] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-07-19 02:09:49,984] [pool-1-thread-12] Initializing /data/graham/G_Wright raw.stk: [testng] [2024-07-19 02:09:50,519] [pool-1-thread-2] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] [2024-07-19 02:09:50,571] [pool-1-thread-1] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-07-19 02:09:50,785] [pool-1-thread-12] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] [2024-07-19 02:09:51,009] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-07-19 02:09:51,395] [pool-1-thread-11] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-07-19 02:09:51,703] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-07-19 02:09:51,717] [pool-1-thread-5] Used files list does not include base file [testng] [2024-07-19 02:09:51,759] [pool-1-thread-6] Initializing 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WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-07-19 02:10:01,803] [pool-1-thread-9] Initializing /data/cumol-test-series/23.001: [testng] [2024-07-19 02:10:01,856] [pool-1-thread-3] Initializing /data/josh/2101to800.stk: [testng] [2024-07-19 02:10:02,529] [pool-1-thread-1] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-07-19 02:10:03,052] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-07-19 02:10:03,102] [pool-1-thread-12] Initializing /data/jerome/deconv.STK: [testng] [2024-07-19 02:10:03,515] [pool-1-thread-1] Initializing /data/qa-30870/220209_posit5.tif: [testng] [2024-07-19 02:10:03,619] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-07-19 02:10:04,200] [pool-1-thread-12] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-07-19 02:10:04,527] [pool-1-thread-4] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2024-07-19 02:10:05,042] [pool-1-thread-5] Initializing /data/david/tl4.tif: [testng] [2024-07-19 02:10:05,577] [pool-1-thread-9] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-19 02:10:05,786] [pool-1-thread-8] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-07-19 02:10:07,099] [pool-1-thread-2] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-07-19 02:10:07,777] [pool-1-thread-12] Initializing /data/alex/Selected FITC.stk: [testng] [2024-07-19 02:10:08,278] [pool-1-thread-1] Initializing /data/josh/2101to400astk.stk: [testng] [2024-07-19 02:10:12,124] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-19 02:10:12,418] [pool-1-thread-9] Initializing /data/steve/Experiment2.stk: [testng] [2024-07-19 02:10:12,581] [pool-1-thread-12] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-19 02:10:13,009] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-19 02:10:13,469] [pool-1-thread-9] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-07-19 02:10:13,507] [pool-1-thread-9] Used files list does not include base file [testng] [2024-07-19 02:10:13,842] [pool-1-thread-3] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-07-19 02:10:15,119] [pool-1-thread-9] Initializing /data/jae/RGB_s34.tif: [testng] [2024-07-19 02:10:15,434] [pool-1-thread-10] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-07-19 02:10:15,885] [pool-1-thread-12] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2024-07-19 02:10:16,683] [pool-1-thread-4] Initializing 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file [testng] [2024-07-19 02:10:20,526] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-19 02:10:21,419] [pool-1-thread-5] Initializing /data/chris/exp1_w2CSU RED_s3_t003.stk: [testng] [2024-07-19 02:10:22,416] [pool-1-thread-5] Initializing /data/qa-16915/m-01-488.ome.tif: [testng] [2024-07-19 02:10:23,159] [pool-1-thread-9] Initializing /data/qa-16915/m-02-561.ome.tif: [testng] [2024-07-19 02:10:25,531] [pool-1-thread-8] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] [2024-07-19 02:10:25,856] [pool-1-thread-2] Initializing /data/josh/2101to600f.stk: [testng] [2024-07-19 02:10:28,836] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-07-19 02:10:28,892] [pool-1-thread-5] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] [2024-07-19 02:10:32,021] [pool-1-thread-11] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] [2024-07-19 02:10:32,213] [pool-1-thread-9] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-07-19 02:10:32,342] [pool-1-thread-1] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-07-19 02:10:33,305] [pool-1-thread-4] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-07-19 02:10:33,703] [pool-1-thread-11] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-07-19 02:10:33,784] [pool-1-thread-9] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-07-19 02:10:33,869] [pool-1-thread-12] Initializing /data/samples/diatoms3d.stk: [testng] [2024-07-19 02:10:34,410] [pool-1-thread-12] Initializing /data/qa-16915/m-02.tif: [testng] [2024-07-19 02:10:35,626] [pool-1-thread-4] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-07-19 02:10:36,030] [pool-1-thread-11] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-07-19 02:10:36,334] [pool-1-thread-1] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-07-19 02:10:38,463] [pool-1-thread-4] Initializing /data/qa-16915/m-04.tif: [testng] [2024-07-19 02:10:38,917] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2024-07-19 02:10:39,496] [pool-1-thread-11] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-07-19 02:10:40,075] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-07-19 02:10:40,496] [pool-1-thread-9] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] [2024-07-19 02:10:41,726] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-07-19 02:10:42,051] [pool-1-thread-9] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-07-19 02:10:42,389] [pool-1-thread-4] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] [2024-07-19 02:10:42,600] [pool-1-thread-12] Initializing /data/josh/EditedMovies/2101to400a.stk: [testng] [2024-07-19 02:10:43,663] [pool-1-thread-11] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-07-19 02:10:44,543] [pool-1-thread-3] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-07-19 02:10:45,298] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] [2024-07-19 02:10:45,365] [pool-1-thread-4] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-07-19 02:10:45,847] [pool-1-thread-3] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-07-19 02:10:46,497] [pool-1-thread-4] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-07-19 02:10:46,567] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2024-07-19 02:10:46,640] [pool-1-thread-9] Used files list does not include base file [testng] [2024-07-19 02:10:47,474] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-07-19 02:10:47,765] [pool-1-thread-3] Initializing /data/dave/Z Series.stk: [testng] [2024-07-19 02:10:48,102] [pool-1-thread-12] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-19 02:10:48,594] [pool-1-thread-3] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-07-19 02:10:49,378] [pool-1-thread-4] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2024-07-19 02:10:49,769] [pool-1-thread-5] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-07-19 02:10:49,930] [pool-1-thread-4] Initializing 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/data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif: [testng] [2024-07-19 02:11:02,860] [pool-1-thread-2] Initializing /data/samples/10xcalib.tif: [testng] [2024-07-19 02:11:03,047] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-07-19 02:11:03,122] [pool-1-thread-12] Used files list does not include base file [testng] [2024-07-19 02:11:03,289] [pool-1-thread-4] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-07-19 02:11:03,463] [pool-1-thread-11] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2024-07-19 02:11:05,489] [pool-1-thread-9] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment5_w1DUAL 491-561_t1.TIF: [testng] [2024-07-19 02:11:05,644] [pool-1-thread-2] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-07-19 02:11:05,900] [pool-1-thread-10] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2024-07-19 02:11:06,095] [pool-1-thread-4] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2024-07-19 02:11:06,601] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-07-19 02:11:07,384] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-07-19 02:11:07,874] [pool-1-thread-12] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-07-19 02:11:08,033] [pool-1-thread-3] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-07-19 02:11:08,163] [pool-1-thread-2] Initializing /data/josh/2101to600e.stk: [testng] [2024-07-19 02:11:08,847] [pool-1-thread-10] Initializing /data/jacek/YFP2trans.tif: [testng] [2024-07-19 02:11:09,260] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.tif: [testng] [2024-07-19 02:11:09,484] [pool-1-thread-4] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-07-19 02:11:10,059] [pool-1-thread-3] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-07-19 02:11:10,225] [pool-1-thread-10] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-07-19 02:11:10,359] [pool-1-thread-6] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-07-19 02:11:10,528] [pool-1-thread-4] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-07-19 02:11:10,567] [pool-1-thread-4] Used files list does not include base file [testng] [2024-07-19 02:11:10,709] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-19 02:11:11,133] [pool-1-thread-12] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] [2024-07-19 02:11:11,730] [pool-1-thread-8] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-07-19 02:11:12,169] [pool-1-thread-3] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2024-07-19 02:11:12,384] [pool-1-thread-6] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-07-19 02:11:12,860] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-07-19 02:11:12,895] [pool-1-thread-10] Used files list does not include base file [testng] [2024-07-19 02:11:12,976] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2024-07-19 02:11:13,044] [pool-1-thread-3] Used files list does not include base file [testng] [2024-07-19 02:11:13,175] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] [2024-07-19 02:11:13,262] [pool-1-thread-12] Used files list does not include base file [testng] [2024-07-19 02:11:13,558] [pool-1-thread-10] Initializing /data/ascb/RNA dye MT 2.tif: [testng] [2024-07-19 02:11:13,844] [pool-1-thread-2] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-07-19 02:11:14,005] [pool-1-thread-4] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2024-07-19 02:11:14,659] [pool-1-thread-8] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-07-19 02:11:14,872] [pool-1-thread-2] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-07-19 02:11:15,050] [pool-1-thread-6] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-19 02:11:15,135] [pool-1-thread-4] Initializing /data/heiko/sample_3x3.stk: [testng] [2024-07-19 02:11:15,346] [pool-1-thread-10] Initializing /data/ascb/mt aim.tif: [testng] [2024-07-19 02:11:15,990] [pool-1-thread-9] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] [2024-07-19 02:11:16,594] [pool-1-thread-2] Initializing 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/data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-07-19 02:11:18,890] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-07-19 02:11:19,565] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] [2024-07-19 02:11:19,911] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2024-07-19 02:11:20,139] [pool-1-thread-3] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2024-07-19 02:11:26,478] [pool-1-thread-4] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2024-07-19 02:11:26,525] [pool-1-thread-4] Used files list does not include base file [testng] [2024-07-19 02:11:26,527] [pool-1-thread-11] Initializing /data/thomas/t_test2001.tif: [testng] [2024-07-19 02:11:26,576] [pool-1-thread-2] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-07-19 02:11:26,626] [pool-1-thread-10] Initializing /data/grant/X.STK: [testng] [2024-07-19 02:11:26,843] [pool-1-thread-12] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-07-19 02:11:27,314] [pool-1-thread-8] Initializing /data/qa-16915/m-01.tif: [testng] [2024-07-19 02:11:28,550] [pool-1-thread-11] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-07-19 02:11:30,389] [pool-1-thread-2] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-07-19 02:11:31,170] [pool-1-thread-12] Initializing /data/aaron/metamorph.stk: [testng] [2024-07-19 02:11:31,855] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-07-19 02:11:32,019] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-07-19 02:11:32,348] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-19 02:11:32,896] [pool-1-thread-8] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] [2024-07-19 02:11:33,157] [pool-1-thread-4] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-07-19 02:11:33,233] [pool-1-thread-10] Initializing /data/thomas/test.tif: [testng] [2024-07-19 02:11:33,798] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2024-07-19 02:11:33,898] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-07-19 02:11:33,959] [pool-1-thread-12] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2024-07-19 02:11:34,203] [pool-1-thread-8] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-07-19 02:11:34,326] [pool-1-thread-2] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-07-19 02:11:34,453] [pool-1-thread-6] Initializing /data/qa-16887/m-01.tif: [testng] [2024-07-19 02:11:35,785] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 20 minutes 51 seconds Finished: SUCCESS