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Started by upstream project "BIOFORMATS-test-repo" build number 125 originally caused by: Started by upstream project "Trigger" build number 142 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins13602700982632297735.sh + '[' sxm = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_19578_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:09:29,958 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:09:29,960 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 02:09:29,960 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:09:29,962 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:09:29,962 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:09:29,962 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:09:29,963 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:09:29,963 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:09:29,964 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:09:29,964 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:09:29,964 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:09:29,964 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:09:30,207 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:09:30,208 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:09:30,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:09:30,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:09:30,244 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:09:30,244 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:09:30,244 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:09:30,245 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:09:30,245 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 02:09:30,246 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 02:09:30,246 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 283 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-19 02:09:30,256] [main] java.version = 1.8.0_342 [testng] 02:09:30,259 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:09:30,259 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:30,304 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-19_02-09-30.log] [testng] 02:09:30,306 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-07-19 02:09:30,308] [main] testng.directory = /data [testng] [2024-07-19 02:09:30,308] [main] testng.configDirectory = /config [testng] [2024-07-19 02:09:30,320] [main] testng.multiplier = 1.0 [testng] [2024-07-19 02:09:30,320] [main] testng.in-memory = false [testng] [2024-07-19 02:09:30,320] [main] testng.allow-missing = false [testng] [2024-07-19 02:09:30,320] [main] user.language = en [testng] [2024-07-19 02:09:30,321] [main] user.country = ${user.country} [testng] [2024-07-19 02:09:30,321] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-07-19 02:09:42,639] [main] ---------------------------------------- [testng] [2024-07-19 02:09:42,639] [main] Total files: 268 [testng] [2024-07-19 02:09:42,639] [main] Scan time: 12.318 s (45 ms/file) [testng] [2024-07-19 02:09:42,639] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 160 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-19 02:09:59,108] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG: [testng] 02:09:59,108 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:09:59,108 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:59,109 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-19_02-09-59.log] [testng] 02:09:59,110 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b011711 - End of configuration. [testng] [2024-07-19 02:09:59,142] [pool-1-thread-12] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif: [testng] 02:09:59,143 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:09:59,143 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:59,144 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-19_02-09-59.log] [testng] 02:09:59,144 |-INFO in ch.qos.logback.core.sift.SiftProcessor@177e90e2 - End of configuration. [testng] [2024-07-19 02:09:59,224] [pool-1-thread-11] Initializing /data/steve/Targa/Test.TGA: [testng] 02:09:59,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:09:59,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:59,225 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-19_02-09-59.log] [testng] 02:09:59,226 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2671216b - End of configuration. [testng] [2024-07-19 02:09:59,250] [pool-1-thread-10] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm: [testng] 02:09:59,251 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:09:59,251 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:59,252 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-19_02-09-59.log] [testng] 02:09:59,252 |-INFO in ch.qos.logback.core.sift.SiftProcessor@576a7 - End of configuration. [testng] [2024-07-19 02:09:59,287] [pool-1-thread-9] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf: [testng] 02:09:59,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:09:59,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:59,288 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-19_02-09-59.log] [testng] 02:09:59,289 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77385163 - End of configuration. [testng] [2024-07-19 02:09:59,316] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif: [testng] 02:09:59,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:09:59,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:59,317 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-19_02-09-59.log] [testng] 02:09:59,317 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16aa2267 - End of configuration. [testng] [2024-07-19 02:09:59,367] [pool-1-thread-7] Initializing /data/steve/TIFF/CONCRETE TIFF: [testng] 02:09:59,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:09:59,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:59,368 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-19_02-09-59.log] [testng] 02:09:59,368 |-INFO in ch.qos.logback.core.sift.SiftProcessor@347b0cd6 - End of configuration. [testng] [2024-07-19 02:09:59,445] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm: [testng] 02:09:59,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:09:59,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:59,446 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-19_02-09-59.log] [testng] 02:09:59,447 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e1e94aa - End of configuration. [testng] [2024-07-19 02:09:59,492] [pool-1-thread-5] Initializing /data/steve/FITS/M51.fits: [testng] 02:09:59,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:09:59,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:59,493 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-19_02-09-59.log] [testng] 02:09:59,493 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d6738b7 - End of configuration. [testng] [2024-07-19 02:09:59,502] [pool-1-thread-4] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles: [testng] 02:09:59,502 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:09:59,502 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:59,503 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-19_02-09-59.log] [testng] 02:09:59,503 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77a22f28 - End of configuration. [testng] [2024-07-19 02:09:59,538] [pool-1-thread-3] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp: [testng] 02:09:59,538 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:09:59,538 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:59,539 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-19_02-09-59.log] [testng] 02:09:59,539 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47b564fc - End of configuration. [testng] [2024-07-19 02:09:59,545] [pool-1-thread-2] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd: [testng] 02:09:59,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:09:59,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:59,546 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-19_02-09-59.log] [testng] 02:09:59,546 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b53b419 - End of configuration. [testng] [2024-07-19 02:10:01,588] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR: [testng] [2024-07-19 02:10:01,608] [pool-1-thread-3] Initializing /data/steve/Philips (Markus G)/302.TIF: [testng] [2024-07-19 02:10:01,689] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT: [testng] [2024-07-19 02:10:01,861] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF: [testng] [2024-07-19 02:10:01,886] [pool-1-thread-10] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF: [testng] [2024-07-19 02:10:01,923] [pool-1-thread-9] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS: [testng] [2024-07-19 02:10:01,935] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee: [testng] [2024-07-19 02:10:01,950] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3: [testng] [2024-07-19 02:10:01,969] [pool-1-thread-2] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM: [testng] [2024-07-19 02:10:02,008] [pool-1-thread-1] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC: [testng] [2024-07-19 02:10:02,036] [pool-1-thread-7] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top: [testng] [2024-07-19 02:10:02,451] [pool-1-thread-12] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif: [testng] [2024-07-19 02:10:02,486] [pool-1-thread-7] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif: [testng] [2024-07-19 02:10:02,556] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm: [testng] [2024-07-19 02:10:02,589] [pool-1-thread-8] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict: [testng] [2024-07-19 02:10:02,762] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A: [testng] [2024-07-19 02:10:02,772] [pool-1-thread-11] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm: [testng] [2024-07-19 02:10:02,891] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict: [testng] [2024-07-19 02:10:02,971] [pool-1-thread-10] Initializing /data/steve/VG SAM (Karen)/BGND.DTI: [testng] [2024-07-19 02:10:02,984] [pool-1-thread-6] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG: [testng] [2024-07-19 02:10:03,195] [pool-1-thread-2] Initializing /data/steve/SBIG/M81 M 40s: [testng] [2024-07-19 02:10:03,241] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3: [testng] [2024-07-19 02:10:03,273] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4: [testng] [2024-07-19 02:10:03,284] [pool-1-thread-8] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack: [testng] [2024-07-19 02:10:03,323] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt): [testng] [2024-07-19 02:10:03,369] [pool-1-thread-7] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG: [testng] [2024-07-19 02:10:03,484] [pool-1-thread-10] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm: [testng] [2024-07-19 02:10:03,602] [pool-1-thread-1] Initializing /data/steve/Burleigh/Burleigh v2/Graphite: [testng] [2024-07-19 02:10:03,648] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2: [testng] [2024-07-19 02:10:03,659] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2: [testng] [2024-07-19 02:10:03,680] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2: [testng] [2024-07-19 02:10:03,762] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3: [testng] [2024-07-19 02:10:03,902] [pool-1-thread-3] Initializing /data/steve/TIFF/Hough test TIFF: [testng] [2024-07-19 02:10:03,935] [pool-1-thread-2] Initializing /data/steve/FITS/M13.fits: [testng] [2024-07-19 02:10:04,050] [pool-1-thread-9] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img: [testng] [2024-07-19 02:10:04,078] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2: [testng] [2024-07-19 02:10:04,102] [pool-1-thread-1] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS: [testng] [2024-07-19 02:10:04,201] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3: [testng] [2024-07-19 02:10:04,250] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test: [testng] [2024-07-19 02:10:04,273] [pool-1-thread-6] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS: [testng] [2024-07-19 02:10:04,284] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2: [testng] [2024-07-19 02:10:04,443] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm: [testng] [2024-07-19 02:10:04,455] [pool-1-thread-2] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict: [testng] [2024-07-19 02:10:04,495] [pool-1-thread-12] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts: [testng] [2024-07-19 02:10:04,501] [pool-1-thread-7] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm: [testng] [2024-07-19 02:10:04,542] [pool-1-thread-3] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP: [testng] [2024-07-19 02:10:04,610] [pool-1-thread-9] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM: [testng] [2024-07-19 02:10:04,702] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2: [testng] [2024-07-19 02:10:04,713] [pool-1-thread-8] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img: [testng] [2024-07-19 02:10:04,734] [pool-1-thread-10] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF: [testng] [2024-07-19 02:10:04,757] [pool-1-thread-12] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm: [testng] [2024-07-19 02:10:04,825] [pool-1-thread-5] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif: [testng] [2024-07-19 02:10:04,865] [pool-1-thread-2] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX: [testng] [2024-07-19 02:10:04,949] [pool-1-thread-3] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF: [testng] [2024-07-19 02:10:05,003] [pool-1-thread-1] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd: [testng] [2024-07-19 02:10:05,044] [pool-1-thread-7] Initializing /data/steve/Philips (Markus G)/302.IMG: [testng] [2024-07-19 02:10:05,101] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm: [testng] [2024-07-19 02:10:05,131] [pool-1-thread-4] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS: [testng] [2024-07-19 02:10:05,153] [pool-1-thread-11] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif: [testng] [2024-07-19 02:10:05,247] [pool-1-thread-12] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP: [testng] [2024-07-19 02:10:05,293] [pool-1-thread-10] Initializing /data/steve/TIFF/8MAR03A.TIFF: [testng] [2024-07-19 02:10:05,326] [pool-1-thread-8] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif: [testng] [2024-07-19 02:10:05,391] [pool-1-thread-9] Initializing /data/steve/SM-Camera/Orhan + IPES rig: [testng] [2024-07-19 02:10:05,480] [pool-1-thread-3] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG: [testng] [2024-07-19 02:10:05,552] [pool-1-thread-1] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS: [testng] [2024-07-19 02:10:05,673] [pool-1-thread-6] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS: [testng] [2024-07-19 02:10:05,699] [pool-1-thread-5] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF: [testng] [2024-07-19 02:10:05,727] [pool-1-thread-4] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP: [testng] [2024-07-19 02:10:05,773] [pool-1-thread-2] Initializing /data/steve/TIFF/ta123 stack TIFF: [testng] [2024-07-19 02:10:05,885] [pool-1-thread-1] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts: [testng] [2024-07-19 02:10:05,950] [pool-1-thread-11] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP: [testng] [2024-07-19 02:10:06,056] [pool-1-thread-3] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP: [testng] [2024-07-19 02:10:06,078] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2: [testng] [2024-07-19 02:10:06,089] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2: [testng] [2024-07-19 02:10:06,096] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR: [testng] [2024-07-19 02:10:06,104] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm: [testng] [2024-07-19 02:10:06,131] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL: [testng] [2024-07-19 02:10:06,147] [pool-1-thread-6] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP: [testng] [2024-07-19 02:10:06,224] [pool-1-thread-5] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img: [testng] [2024-07-19 02:10:06,277] [pool-1-thread-1] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV: [testng] [2024-07-19 02:10:06,354] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2: [testng] [2024-07-19 02:10:06,366] [pool-1-thread-2] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG: [testng] [2024-07-19 02:10:06,430] [pool-1-thread-8] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG: [testng] [2024-07-19 02:10:06,463] [pool-1-thread-4] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT: [testng] [2024-07-19 02:10:06,502] [pool-1-thread-7] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif: [testng] [2024-07-19 02:10:06,534] [pool-1-thread-10] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm: [testng] [2024-07-19 02:10:06,577] [pool-1-thread-11] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR: [testng] [2024-07-19 02:10:06,609] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF: [testng] [2024-07-19 02:10:06,675] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2: [testng] [2024-07-19 02:10:06,687] [pool-1-thread-6] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif: [testng] [2024-07-19 02:10:06,814] [pool-1-thread-5] Initializing /data/steve/TIFF/CD-ROM TIFF: [testng] [2024-07-19 02:10:06,863] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF: [testng] [2024-07-19 02:10:07,129] [pool-1-thread-9] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG: [testng] [2024-07-19 02:10:07,170] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF: [testng] [2024-07-19 02:10:07,241] [pool-1-thread-2] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd: [testng] [2024-07-19 02:10:07,267] [pool-1-thread-10] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif: [testng] [2024-07-19 02:10:07,406] [pool-1-thread-11] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr: [testng] [2024-07-19 02:10:07,466] [pool-1-thread-4] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk: [testng] [2024-07-19 02:10:07,550] [pool-1-thread-8] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk: [testng] [2024-07-19 02:10:07,627] [pool-1-thread-5] Initializing /data/steve/TIFF/Little owl TIFF: [testng] [2024-07-19 02:10:07,845] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2: [testng] [2024-07-19 02:10:08,288] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2: [testng] [2024-07-19 02:10:08,325] [pool-1-thread-2] Initializing /data/steve/FITS/M104.fits: [testng] [2024-07-19 02:10:08,370] [pool-1-thread-3] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk: [testng] [2024-07-19 02:10:08,415] [pool-1-thread-5] Initializing /data/steve/SBIG/M81 H 250s Tr=5s: [testng] [2024-07-19 02:10:08,469] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY: [testng] [2024-07-19 02:10:08,486] [pool-1-thread-8] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm: [testng] [2024-07-19 02:10:08,621] [pool-1-thread-2] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict: [testng] [2024-07-19 02:10:08,672] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry): [testng] [2024-07-19 02:10:08,698] [pool-1-thread-11] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top: [testng] [2024-07-19 02:10:08,752] [pool-1-thread-1] Initializing /data/steve/Philips (Markus G)/135-30.IMG: [testng] [2024-07-19 02:10:08,955] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5: [testng] [2024-07-19 02:10:09,003] [pool-1-thread-8] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif: [testng] [2024-07-19 02:10:09,111] [pool-1-thread-6] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC: [testng] [2024-07-19 02:10:09,318] [pool-1-thread-12] Initializing /data/steve/SBIG/M82 H 100s Tr=10s: [testng] [2024-07-19 02:10:09,386] [pool-1-thread-11] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG: [testng] [2024-07-19 02:10:09,428] [pool-1-thread-2] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR: [testng] [2024-07-19 02:10:09,547] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3: [testng] [2024-07-19 02:10:09,815] [pool-1-thread-9] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR: [testng] [2024-07-19 02:10:09,993] [pool-1-thread-6] Initializing /data/steve/TIFF/HAFF SEM: [testng] [2024-07-19 02:10:10,233] [pool-1-thread-1] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF: [testng] [2024-07-19 02:10:10,278] [pool-1-thread-5] Initializing /data/steve/UBM (Rosset)/SG2.PR3: [testng] [2024-07-19 02:10:10,304] [pool-1-thread-2] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG: [testng] [2024-07-19 02:10:10,391] [pool-1-thread-3] Initializing /data/steve/Philips (Markus G)/135-33.IMG: [testng] [2024-07-19 02:10:10,425] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm: [testng] [2024-07-19 02:10:10,451] [pool-1-thread-7] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF: [testng] [2024-07-19 02:10:10,545] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE: [testng] [2024-07-19 02:10:10,604] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm: [testng] [2024-07-19 02:10:10,683] [pool-1-thread-12] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts: [testng] [2024-07-19 02:10:10,700] [pool-1-thread-11] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG: [testng] [2024-07-19 02:10:10,743] [pool-1-thread-9] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif: [testng] [2024-07-19 02:10:10,853] [pool-1-thread-1] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP: [testng] [2024-07-19 02:10:10,923] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3: [testng] [2024-07-19 02:10:10,932] [pool-1-thread-7] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI: [testng] [2024-07-19 02:10:10,945] [pool-1-thread-5] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi: [testng] [2024-07-19 02:10:11,046] [pool-1-thread-6] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR: [testng] [2024-07-19 02:10:11,080] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr: [testng] [2024-07-19 02:10:11,155] [pool-1-thread-7] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm: [testng] [2024-07-19 02:10:11,217] [pool-1-thread-10] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG: [testng] [2024-07-19 02:10:11,287] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2: [testng] [2024-07-19 02:10:11,338] [pool-1-thread-12] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP: [testng] [2024-07-19 02:10:11,413] [pool-1-thread-9] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG: [testng] [2024-07-19 02:10:11,460] [pool-1-thread-1] Initializing /data/steve/TIFF/ta269 TIFF: [testng] [2024-07-19 02:10:11,489] [pool-1-thread-11] Initializing /data/steve/Philips (Markus G)/135-31.IMG: [testng] [2024-07-19 02:10:11,499] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2: [testng] [2024-07-19 02:10:11,518] [pool-1-thread-5] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test: [testng] [2024-07-19 02:10:11,587] [pool-1-thread-6] Initializing /data/steve/Philips (Markus G)/135-32.IMG: [testng] [2024-07-19 02:10:11,796] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 8480, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 45 seconds Finished: SUCCESS