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Started by upstream project "BIOFORMATS-test-repo" build number 126 originally caused by: Started by upstream project "Trigger" build number 143 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins5324196363125479687.sh + '[' targa = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_19691_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:27:16,737 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:27:16,739 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 01:27:16,739 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:27:16,740 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:27:16,741 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:27:16,741 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:27:16,741 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:27:16,741 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:27:16,742 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:27:16,743 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:27:16,743 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:27:16,743 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:27:16,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:27:16,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:27:16,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:27:16,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:27:16,967 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:27:16,968 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:27:16,968 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:27:16,968 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:27:16,968 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 01:27:16,969 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 01:27:16,969 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 227 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-20 01:27:16,983] [main] java.version = 11.0.16 [testng] 01:27:16,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:27:16,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:17,032 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-20_01-27-17.log] [testng] 01:27:17,034 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-07-20 01:27:17,037] [main] testng.directory = /data [testng] [2024-07-20 01:27:17,037] [main] testng.configDirectory = /config [testng] [2024-07-20 01:27:17,049] [main] testng.multiplier = 1.0 [testng] [2024-07-20 01:27:17,051] [main] testng.in-memory = false [testng] [2024-07-20 01:27:17,051] [main] testng.allow-missing = false [testng] [2024-07-20 01:27:17,051] [main] user.language = en [testng] [2024-07-20 01:27:17,051] [main] user.country = ${user.country} [testng] [2024-07-20 01:27:17,051] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-07-20 01:27:17,533] [main] ---------------------------------------- [testng] [2024-07-20 01:27:17,534] [main] Total files: 21 [testng] [2024-07-20 01:27:17,534] [main] Scan time: 0.482 s (22 ms/file) [testng] [2024-07-20 01:27:17,534] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-20 01:27:18,807] [pool-1-thread-1] Initializing /data/samples/XING_B32.TGA: [testng] 01:27:18,809 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:27:18,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:18,813 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-20_01-27-18.log] [testng] 01:27:18,814 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e0c830b - End of configuration. [testng] [2024-07-20 01:27:18,856] [pool-1-thread-12] Initializing /data/samples/FLAG_B32.TGA: [testng] 01:27:18,857 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:27:18,857 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:18,860 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-20_01-27-18.log] [testng] 01:27:18,861 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5465df6b - End of configuration. [testng] [2024-07-20 01:27:18,947] [pool-1-thread-11] Initializing /data/samples/XING_T32.TGA: [testng] 01:27:18,947 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:27:18,947 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:18,948 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-20_01-27-18.log] [testng] 01:27:18,949 |-INFO in ch.qos.logback.core.sift.SiftProcessor@673d72e6 - End of configuration. [testng] [2024-07-20 01:27:18,961] [pool-1-thread-10] Initializing /data/samples/XING_T16.TGA: [testng] 01:27:18,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:27:18,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:18,963 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-20_01-27-18.log] [testng] 01:27:18,963 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ee52cad - End of configuration. [testng] [2024-07-20 01:27:18,976] [pool-1-thread-9] Initializing /data/samples/FLAG_T16.TGA: [testng] 01:27:18,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:27:18,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:18,978 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-20_01-27-18.log] [testng] 01:27:18,978 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66aebe46 - End of configuration. [testng] [2024-07-20 01:27:18,990] [pool-1-thread-3] Initializing /data/samples/XING_B16.TGA: [testng] 01:27:18,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:27:18,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:18,991 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-20_01-27-18.log] [testng] 01:27:18,992 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f1e6281 - End of configuration. [testng] [2024-07-20 01:27:19,004] [pool-1-thread-8] Initializing /data/samples/FLAG_B24.TGA: [testng] 01:27:19,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:27:19,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:19,006 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-20_01-27-19.log] [testng] 01:27:19,006 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e56a409 - End of configuration. [testng] [2024-07-20 01:27:19,018] [pool-1-thread-7] Initializing /data/samples/UTC16.TGA: [testng] 01:27:19,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:27:19,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:19,020 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-20_01-27-19.log] [testng] 01:27:19,021 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11b329a9 - End of configuration. [testng] [2024-07-20 01:27:19,034] [pool-1-thread-6] Initializing /data/samples/UTC24.TGA: [testng] 01:27:19,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:27:19,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:19,035 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-20_01-27-19.log] [testng] 01:27:19,036 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1186eebb - End of configuration. [testng] [2024-07-20 01:27:19,049] [pool-1-thread-5] Initializing /data/samples/MARBLES.TGA: [testng] 01:27:19,050 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:27:19,050 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:19,051 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-20_01-27-19.log] [testng] 01:27:19,052 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30240732 - End of configuration. [testng] [2024-07-20 01:27:19,075] [pool-1-thread-4] Initializing /data/samples/FLAG_B16.TGA: [testng] 01:27:19,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:27:19,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:19,076 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-20_01-27-19.log] [testng] 01:27:19,077 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37ca85fa - End of configuration. [testng] [2024-07-20 01:27:19,088] [pool-1-thread-2] Initializing /data/samples/UTC32.TGA: [testng] 01:27:19,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:27:19,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:19,089 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-20_01-27-19.log] [testng] 01:27:19,090 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ec5bb88 - End of configuration. [testng] [2024-07-20 01:27:21,236] [pool-1-thread-12] Initializing /data/samples/XING_B24.TGA: [testng] [2024-07-20 01:27:21,247] [pool-1-thread-9] Initializing /data/samples/UBW8.TGA: [testng] [2024-07-20 01:27:21,255] [pool-1-thread-4] Initializing /data/samples/XING_T24.TGA: [testng] [2024-07-20 01:27:21,265] [pool-1-thread-7] Initializing /data/samples/FLAG_T32.TGA: [testng] [2024-07-20 01:27:21,274] [pool-1-thread-6] Initializing /data/samples/UCM8.TGA: [testng] [2024-07-20 01:27:21,281] [pool-1-thread-1] Initializing /data/samples/CTC24.TGA: [testng] [2024-07-20 01:27:21,289] [pool-1-thread-11] Initializing /data/samples/CTC16.TGA: [testng] [2024-07-20 01:27:21,298] [pool-1-thread-3] Initializing /data/samples/CBW8.TGA: [testng] [2024-07-20 01:27:21,307] [pool-1-thread-10] Initializing /data/samples/CCM8.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 8 seconds Finished: SUCCESS