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Started by upstream project "BIOFORMATS-test-repo" build number 126 originally caused by: Started by upstream project "Trigger" build number 143 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins17283531658923732631.sh + '[' pict = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_19704_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:30:02,192 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:30:02,193 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 01:30:02,193 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:30:02,194 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:30:02,195 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:30:02,195 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:30:02,196 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:30:02,196 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:30:02,196 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:30:02,197 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:30:02,197 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:30:02,197 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:30:02,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:30:02,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:30:02,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:30:02,392 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:30:02,397 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:30:02,397 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:30:02,398 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:30:02,398 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:30:02,398 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 01:30:02,399 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 01:30:02,399 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 203 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-20 01:30:02,409] [main] java.version = 11.0.16 [testng] 01:30:02,412 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:30:02,412 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:02,456 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-20_01-30-02.log] [testng] 01:30:02,457 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-07-20 01:30:02,459] [main] testng.directory = /data [testng] [2024-07-20 01:30:02,460] [main] testng.configDirectory = /config [testng] [2024-07-20 01:30:02,470] [main] testng.multiplier = 1.0 [testng] [2024-07-20 01:30:02,471] [main] testng.in-memory = false [testng] [2024-07-20 01:30:02,471] [main] testng.allow-missing = false [testng] [2024-07-20 01:30:02,471] [main] user.language = en [testng] [2024-07-20 01:30:02,471] [main] user.country = ${user.country} [testng] [2024-07-20 01:30:02,471] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-07-20 01:30:02,912] [main] ---------------------------------------- [testng] [2024-07-20 01:30:02,913] [main] Total files: 25 [testng] [2024-07-20 01:30:02,913] [main] Scan time: 0.44 s (17 ms/file) [testng] [2024-07-20 01:30:02,913] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-20 01:30:04,552] [pool-1-thread-1] Initializing /data/misc/swlogo.pict: [testng] 01:30:04,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:30:04,556 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:04,558 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-20_01-30-04.log] [testng] 01:30:04,559 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18adff7b - End of configuration. [testng] [2024-07-20 01:30:04,587] [pool-1-thread-12] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] 01:30:04,587 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:30:04,587 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:04,589 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-20_01-30-04.log] [testng] 01:30:04,589 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a032986 - End of configuration. [testng] [2024-07-20 01:30:04,598] [pool-1-thread-11] Initializing /data/misc/planet.png: [testng] 01:30:04,599 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:30:04,599 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:04,600 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-20_01-30-04.log] [testng] 01:30:04,600 |-INFO in ch.qos.logback.core.sift.SiftProcessor@319d5d5e - End of configuration. [testng] [2024-07-20 01:30:04,606] [pool-1-thread-10] Initializing /data/brian/images/YEL.PCT: [testng] 01:30:04,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:30:04,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:04,607 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-20_01-30-04.log] [testng] 01:30:04,608 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4391ef01 - End of configuration. [testng] [2024-07-20 01:30:04,624] [pool-1-thread-9] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] 01:30:04,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:30:04,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:04,625 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-20_01-30-04.log] [testng] 01:30:04,625 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c53b3f4 - End of configuration. [testng] [2024-07-20 01:30:04,748] [pool-1-thread-8] Initializing /data/brian/images/FLAG_RGB.pct: [testng] 01:30:04,749 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:30:04,749 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:04,751 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-20_01-30-04.log] [testng] 01:30:04,751 |-INFO in ch.qos.logback.core.sift.SiftProcessor@408b8b94 - End of configuration. [testng] [2024-07-20 01:30:04,760] [pool-1-thread-7] Initializing /data/brian/images/WHT.PCT: [testng] 01:30:04,760 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:30:04,760 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:04,761 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-20_01-30-04.log] [testng] 01:30:04,761 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62a54eee - End of configuration. [testng] [2024-07-20 01:30:04,779] [pool-1-thread-6] Initializing /data/brian/images/BLK.PCT: [testng] 01:30:04,779 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:30:04,779 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:04,780 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-20_01-30-04.log] [testng] 01:30:04,781 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69b840dd - End of configuration. [testng] [2024-07-20 01:30:04,808] [pool-1-thread-5] Initializing /data/brian/images/GRN.PCT: [testng] 01:30:04,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:30:04,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:04,809 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-20_01-30-04.log] [testng] 01:30:04,809 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c467d2b - End of configuration. [testng] [2024-07-20 01:30:04,841] [pool-1-thread-4] Initializing /data/jqd/mireSixteen.pict: [testng] 01:30:04,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:30:04,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:04,842 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-20_01-30-04.log] [testng] 01:30:04,842 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7548f133 - End of configuration. [testng] [2024-07-20 01:30:04,849] [pool-1-thread-3] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] 01:30:04,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:30:04,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:04,850 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-20_01-30-04.log] [testng] 01:30:04,851 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a925886 - End of configuration. [testng] [2024-07-20 01:30:04,875] [pool-1-thread-2] Initializing /data/jqd/sixteenBit.pict: [testng] 01:30:04,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:30:04,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:04,876 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-20_01-30-04.log] [testng] 01:30:04,876 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55c6db80 - End of configuration. [testng] [2024-07-20 01:30:06,261] [pool-1-thread-1] Initializing /data/brian/images/TRU256.PCT: [testng] [2024-07-20 01:30:06,272] [pool-1-thread-8] Initializing /data/jqd/mire32.pict: [testng] [2024-07-20 01:30:06,282] [pool-1-thread-4] Initializing /data/brian/images/RED.PCT: [testng] [2024-07-20 01:30:06,297] [pool-1-thread-12] Initializing /data/brian/images/MARBLES_B32.pct: [testng] [2024-07-20 01:30:06,526] [pool-1-thread-11] Initializing /data/brian/images/FLAG_B32.pct: [testng] [2024-07-20 01:30:06,800] [pool-1-thread-2] Initializing /data/jqd/32bit.pict: [testng] [2024-07-20 01:30:06,822] [pool-1-thread-7] Initializing /data/brian/images/VENUS.pct: [testng] [2024-07-20 01:30:06,840] [pool-1-thread-5] Initializing /data/brian/images/BLU.PCT: [testng] [2024-07-20 01:30:06,856] [pool-1-thread-6] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] [2024-07-20 01:30:06,890] [pool-1-thread-10] Initializing /data/misc/planet.pict: [testng] [2024-07-20 01:30:07,146] [pool-1-thread-1] Initializing /data/misc/planet2.pict: [testng] [2024-07-20 01:30:07,213] [pool-1-thread-11] Initializing /data/brian/images/FLAG_B24.PCT: [testng] [2024-07-20 01:30:07,247] [pool-1-thread-8] Initializing /data/wayne/PotatoMeristem.pict: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 9 seconds Finished: SUCCESS