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Started by upstream project "BIOFORMATS-test-repo" build number 127
originally caused by:
 Started by upstream project "Trigger" build number 144
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins2874491311872545458.sh
+ '[' afi = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_19898_merge_ci -v /uod/idr/repos/curated/afi:/data -v /uod/idr-scratch/merge-ci/curated/afi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 01:49:21,847 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 01:49:21,848 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
   [testng] 01:49:21,848 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:49:21,849 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:49:21,849 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 01:49:21,850 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 01:49:21,850 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 01:49:21,850 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:49:21,851 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:49:21,852 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 01:49:21,852 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 01:49:21,852 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 01:49:22,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:49:22,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:49:22,078 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:49:22,078 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:49:22,087 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:49:22,087 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:49:22,087 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:49:22,088 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:49:22,088 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
   [testng] 01:49:22,090 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
   [testng] 01:49:22,090 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 239 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-07-21 01:49:22,104] [main] java.version = 17.0.2
   [testng] 01:49:22,110 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:49:22,110 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:22,183 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-21_01-49-22.log]
   [testng] 01:49:22,185 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
   [testng] [2024-07-21 01:49:22,188] [main] testng.directory = /data
   [testng] [2024-07-21 01:49:22,189] [main] testng.configDirectory = /config
   [testng] [2024-07-21 01:49:22,203] [main] testng.multiplier = 1.0
   [testng] [2024-07-21 01:49:22,205] [main] testng.in-memory = false
   [testng] [2024-07-21 01:49:22,205] [main] testng.allow-missing = false
   [testng] [2024-07-21 01:49:22,205] [main] user.language = en
   [testng] [2024-07-21 01:49:22,205] [main] user.country = ${user.country}
   [testng] [2024-07-21 01:49:22,206] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-07-21 01:49:22,810] [main] ----------------------------------------
   [testng] [2024-07-21 01:49:22,810] [main] Total files: 16
   [testng] [2024-07-21 01:49:22,810] [main] Scan time: 0.604 s (37 ms/file)
   [testng] [2024-07-21 01:49:22,810] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 15 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-07-21 01:49:32,929] [pool-1-thread-1] Initializing /data/samples/5347.afi: 
   [testng] 01:49:32,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:49:32,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:32,932 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-21_01-49-32.log]
   [testng] 01:49:32,933 |-INFO in ch.qos.logback.core.sift.SiftProcessor@358c545f - End of configuration.
   [testng] [2024-07-21 01:49:33,045] [pool-1-thread-12] Initializing /data/samples/5414.afi: 
   [testng] 01:49:33,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 01:49:33,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:33,056 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-21_01-49-33.log]
   [testng] 01:49:33,057 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70304a64 - End of configuration.
   [testng] [2024-07-21 01:49:33,317] [pool-1-thread-11] Initializing /data/samples/5407.afi: 
   [testng] 01:49:33,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 01:49:33,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:33,319 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-21_01-49-33.log]
   [testng] 01:49:33,320 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6daa4864 - End of configuration.
   [testng] [2024-07-21 01:49:33,426] [pool-1-thread-10] Initializing /data/samples/5351.afi: 
   [testng] 01:49:33,426 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:49:33,426 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:33,427 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-21_01-49-33.log]
   [testng] 01:49:33,427 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e45050f - End of configuration.
   [testng] [2024-07-21 01:49:33,592] [pool-1-thread-9] Initializing /data/samples/5343.afi: 
   [testng] 01:49:33,593 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:49:33,593 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:33,594 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-21_01-49-33.log]
   [testng] 01:49:33,595 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66961918 - End of configuration.
   [testng] [2024-07-21 01:49:33,735] [pool-1-thread-8] Initializing /data/samples/5383.afi: 
   [testng] 01:49:33,735 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:49:33,735 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:33,736 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-21_01-49-33.log]
   [testng] 01:49:33,737 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e2473d0 - End of configuration.
   [testng] [2024-07-21 01:49:33,834] [pool-1-thread-7] Initializing /data/samples/5440.afi: 
   [testng] 01:49:33,835 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:49:33,835 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:33,836 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-21_01-49-33.log]
   [testng] 01:49:33,836 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b5c6bf1 - End of configuration.
   [testng] [2024-07-21 01:49:33,938] [pool-1-thread-6] Initializing /data/samples/5358.afi: 
   [testng] 01:49:33,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:49:33,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:33,939 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-21_01-49-33.log]
   [testng] 01:49:33,940 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c606689 - End of configuration.
   [testng] [2024-07-21 01:49:34,070] [pool-1-thread-5] Initializing /data/samples/5365.afi: 
   [testng] 01:49:34,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:49:34,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:34,071 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-21_01-49-34.log]
   [testng] 01:49:34,071 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47afd8c1 - End of configuration.
   [testng] [2024-07-21 01:49:34,183] [pool-1-thread-4] Initializing /data/samples/5446.afi: 
   [testng] 01:49:34,184 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:49:34,184 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:34,185 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-21_01-49-34.log]
   [testng] 01:49:34,185 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c3959aa - End of configuration.
   [testng] [2024-07-21 01:49:34,302] [pool-1-thread-3] Initializing /data/samples/5371.afi: 
   [testng] 01:49:34,302 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:49:34,302 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:34,303 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-21_01-49-34.log]
   [testng] 01:49:34,303 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e7498d - End of configuration.
   [testng] [2024-07-21 01:49:34,392] [pool-1-thread-2] Initializing /data/samples/5387.afi: 
   [testng] 01:49:34,392 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:49:34,393 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:34,394 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-21_01-49-34.log]
   [testng] 01:49:34,395 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a506c95 - End of configuration.
   [testng] [2024-07-21 01:50:38,909] [pool-1-thread-6] Initializing /data/samples/5306.afi: 
   [testng] [2024-07-21 01:50:40,769] [pool-1-thread-4] Initializing /data/samples/5400.afi: 
   [testng] [2024-07-21 01:50:42,671] [pool-1-thread-5] Initializing /data/samples/5339.afi: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 795, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 2 minutes 37 seconds
Finished: SUCCESS