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Started by upstream project "BIOFORMATS-test-repo" build number 17 originally caused by: Started by upstream project "Trigger" build number 20 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins18238934254037400507.sh + '[' pict = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_1991_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 00:27:08,705 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:27:08,707 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 00:27:08,707 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:27:08,709 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:27:08,709 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:27:08,710 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:27:08,710 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:27:08,710 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:27:08,711 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:27:08,711 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:27:08,712 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:27:08,712 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:27:08,893 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:27:08,893 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:27:08,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:27:08,920 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:27:08,926 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:27:08,926 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:27:08,926 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:27:08,926 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:27:08,926 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 00:27:08,927 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 00:27:08,927 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 216 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-03-30 00:27:08,937] [main] java.version = 11.0.16 [testng] 00:27:08,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:27:08,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:08,985 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-30_00-27-08.log] [testng] 00:27:08,987 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-03-30 00:27:08,989] [main] testng.directory = /data [testng] [2024-03-30 00:27:08,989] [main] testng.configDirectory = /config [testng] [2024-03-30 00:27:09,000] [main] testng.multiplier = 1.0 [testng] [2024-03-30 00:27:09,001] [main] testng.in-memory = false [testng] [2024-03-30 00:27:09,001] [main] testng.allow-missing = false [testng] [2024-03-30 00:27:09,001] [main] user.language = en [testng] [2024-03-30 00:27:09,001] [main] user.country = ${user.country} [testng] [2024-03-30 00:27:09,002] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-03-30 00:27:09,411] [main] ---------------------------------------- [testng] [2024-03-30 00:27:09,411] [main] Total files: 25 [testng] [2024-03-30 00:27:09,411] [main] Scan time: 0.409 s (16 ms/file) [testng] [2024-03-30 00:27:09,411] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-03-30 00:27:11,067] [pool-1-thread-1] Initializing /data/misc/swlogo.pict: [testng] 00:27:11,069 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:27:11,069 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:11,071 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-30_00-27-11.log] [testng] 00:27:11,071 |-INFO in ch.qos.logback.core.sift.SiftProcessor@169554ed - End of configuration. [testng] [2024-03-30 00:27:11,096] [pool-1-thread-12] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] 00:27:11,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:27:11,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:11,098 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-30_00-27-11.log] [testng] 00:27:11,099 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3008f505 - End of configuration. [testng] [2024-03-30 00:27:11,109] [pool-1-thread-11] Initializing /data/misc/planet.png: [testng] 00:27:11,110 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:27:11,110 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:11,110 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-30_00-27-11.log] [testng] 00:27:11,111 |-INFO in ch.qos.logback.core.sift.SiftProcessor@154d5a20 - End of configuration. [testng] [2024-03-30 00:27:11,118] [pool-1-thread-10] Initializing /data/brian/images/YEL.PCT: [testng] 00:27:11,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:27:11,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:11,119 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-30_00-27-11.log] [testng] 00:27:11,120 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a305db - End of configuration. [testng] [2024-03-30 00:27:11,140] [pool-1-thread-9] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] 00:27:11,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:27:11,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:11,142 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-30_00-27-11.log] [testng] 00:27:11,142 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f7b6c37 - End of configuration. [testng] [2024-03-30 00:27:11,288] [pool-1-thread-8] Initializing /data/brian/images/FLAG_RGB.pct: [testng] 00:27:11,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:27:11,289 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:11,289 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-30_00-27-11.log] [testng] 00:27:11,290 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f182c70 - End of configuration. [testng] [2024-03-30 00:27:11,300] [pool-1-thread-7] Initializing /data/brian/images/WHT.PCT: [testng] 00:27:11,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:27:11,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:11,301 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-30_00-27-11.log] [testng] 00:27:11,301 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ebf4fd8 - End of configuration. [testng] [2024-03-30 00:27:11,317] [pool-1-thread-6] Initializing /data/brian/images/BLK.PCT: [testng] 00:27:11,317 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:27:11,317 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:11,319 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-30_00-27-11.log] [testng] 00:27:11,320 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75650ac1 - End of configuration. [testng] [2024-03-30 00:27:11,333] [pool-1-thread-5] Initializing /data/brian/images/GRN.PCT: [testng] 00:27:11,334 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:27:11,334 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:11,334 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-30_00-27-11.log] [testng] 00:27:11,335 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1da90d93 - End of configuration. [testng] [2024-03-30 00:27:11,350] [pool-1-thread-4] Initializing /data/jqd/mireSixteen.pict: [testng] 00:27:11,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:27:11,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:11,351 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-30_00-27-11.log] [testng] 00:27:11,352 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e94be3b - End of configuration. [testng] [2024-03-30 00:27:11,360] [pool-1-thread-3] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] 00:27:11,360 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:27:11,360 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:11,361 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-30_00-27-11.log] [testng] 00:27:11,361 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69deadbb - End of configuration. [testng] [2024-03-30 00:27:11,381] [pool-1-thread-2] Initializing /data/jqd/sixteenBit.pict: [testng] 00:27:11,382 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:27:11,382 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:11,383 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-30_00-27-11.log] [testng] 00:27:11,383 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52acacc3 - End of configuration. [testng] [2024-03-30 00:27:12,785] [pool-1-thread-4] Initializing /data/brian/images/TRU256.PCT: [testng] [2024-03-30 00:27:12,796] [pool-1-thread-8] Initializing /data/jqd/mire32.pict: [testng] [2024-03-30 00:27:12,806] [pool-1-thread-12] Initializing /data/brian/images/RED.PCT: [testng] [2024-03-30 00:27:12,824] [pool-1-thread-1] Initializing /data/brian/images/MARBLES_B32.pct: [testng] [2024-03-30 00:27:13,454] [pool-1-thread-2] Initializing /data/brian/images/FLAG_B32.pct: [testng] [2024-03-30 00:27:13,471] [pool-1-thread-11] Initializing /data/brian/images/VENUS.pct: [testng] [2024-03-30 00:27:13,492] [pool-1-thread-7] Initializing /data/brian/images/BLU.PCT: [testng] [2024-03-30 00:27:13,506] [pool-1-thread-5] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] [2024-03-30 00:27:13,543] [pool-1-thread-10] Initializing /data/misc/planet.pict: [testng] [2024-03-30 00:27:13,596] [pool-1-thread-6] Initializing /data/jqd/32bit.pict: [testng] [2024-03-30 00:27:13,830] [pool-1-thread-3] Initializing /data/misc/planet2.pict: [testng] [2024-03-30 00:27:13,863] [pool-1-thread-4] Initializing /data/brian/images/FLAG_B24.PCT: [testng] [2024-03-30 00:27:13,878] [pool-1-thread-8] Initializing /data/wayne/PotatoMeristem.pict: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 9 seconds Finished: SUCCESS