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Started by upstream project "BIOFORMATS-test-repo" build number 128 originally caused by: Started by upstream project "Trigger" build number 145 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins12081347259605553083.sh + '[' pcx = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_19982_merge_ci -v /uod/idr/repos/curated/pcx:/data -v /uod/idr-scratch/merge-ci/curated/pcx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:20:29,346 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:20:29,347 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:20:29,347 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:20:29,349 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:20:29,349 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:20:29,349 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:20:29,349 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:20:29,349 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:20:29,350 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:20:29,350 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:20:29,350 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:20:29,350 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:20:29,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:20:29,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:20:29,620 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:20:29,620 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:20:29,629 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:20:29,629 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:20:29,629 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:20:29,629 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:20:29,629 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:20:29,630 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:20:29,630 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 280 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-22 01:20:29,641] [main] java.version = 1.8.0_342 [testng] 01:20:29,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:20:29,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:29,693 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-22_01-20-29.log] [testng] 01:20:29,695 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-07-22 01:20:29,697] [main] testng.directory = /data [testng] [2024-07-22 01:20:29,698] [main] testng.configDirectory = /config [testng] [2024-07-22 01:20:29,710] [main] testng.multiplier = 1.0 [testng] [2024-07-22 01:20:29,710] [main] testng.in-memory = false [testng] [2024-07-22 01:20:29,711] [main] testng.allow-missing = false [testng] [2024-07-22 01:20:29,711] [main] user.language = fr [testng] [2024-07-22 01:20:29,711] [main] user.country = FR [testng] [2024-07-22 01:20:29,711] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-07-22 01:20:30,228] [main] ---------------------------------------- [testng] [2024-07-22 01:20:30,229] [main] Total files: 36 [testng] [2024-07-22 01:20:30,229] [main] Scan time: 0.517 s (14 ms/file) [testng] [2024-07-22 01:20:30,229] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 35 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-22 01:20:32,624] [pool-1-thread-1] Initializing /data/generated/mri-stack13.pcx: [testng] 01:20:32,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:20:32,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:32,625 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-22_01-20-32.log] [testng] 01:20:32,625 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40f17941 - End of configuration. [testng] [2024-07-22 01:20:32,664] [pool-1-thread-12] Initializing /data/generated/mri-stack23.pcx: [testng] 01:20:32,664 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:20:32,664 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:32,665 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-22_01-20-32.log] [testng] 01:20:32,665 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61b4987 - End of configuration. [testng] [2024-07-22 01:20:32,670] [pool-1-thread-11] Initializing /data/josh/Screenshots/leica-lif.pcx: [testng] 01:20:32,670 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:20:32,670 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:32,670 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-22_01-20-32.log] [testng] 01:20:32,671 |-INFO in ch.qos.logback.core.sift.SiftProcessor@775a925b - End of configuration. [testng] [2024-07-22 01:20:32,678] [pool-1-thread-10] Initializing /data/generated/mri-stack17.pcx: [testng] 01:20:32,678 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:20:32,678 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:32,679 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-22_01-20-32.log] [testng] 01:20:32,679 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72ba8c68 - End of configuration. [testng] [2024-07-22 01:20:32,683] [pool-1-thread-9] Initializing /data/generated/mri-stack5.pcx: [testng] 01:20:32,684 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:20:32,684 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:32,684 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-22_01-20-32.log] [testng] 01:20:32,684 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f6e3595 - End of configuration. [testng] [2024-07-22 01:20:32,689] [pool-1-thread-8] Initializing /data/generated/mri-stack7.pcx: [testng] 01:20:32,689 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:20:32,689 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:32,689 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-22_01-20-32.log] [testng] 01:20:32,689 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c836706 - End of configuration. [testng] [2024-07-22 01:20:32,693] [pool-1-thread-7] Initializing /data/generated/mri-stack11.pcx: [testng] 01:20:32,693 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:20:32,693 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:32,694 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-22_01-20-32.log] [testng] 01:20:32,694 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76930c7a - End of configuration. [testng] [2024-07-22 01:20:32,698] [pool-1-thread-6] Initializing /data/generated/mri-stack4.pcx: [testng] 01:20:32,698 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:20:32,698 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:32,698 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-22_01-20-32.log] [testng] 01:20:32,698 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4092618a - End of configuration. [testng] [2024-07-22 01:20:32,702] [pool-1-thread-5] Initializing /data/generated/mri-stack15.pcx: [testng] 01:20:32,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:20:32,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:32,702 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-22_01-20-32.log] [testng] 01:20:32,703 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cee035e - End of configuration. [testng] [2024-07-22 01:20:32,706] [pool-1-thread-4] Initializing /data/generated/mri-stack2.pcx: [testng] 01:20:32,706 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:20:32,706 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:32,707 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-22_01-20-32.log] [testng] 01:20:32,707 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73d2419e - End of configuration. [testng] [2024-07-22 01:20:32,711] [pool-1-thread-3] Initializing /data/generated/mri-stack18.pcx: [testng] 01:20:32,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:20:32,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:32,712 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-22_01-20-32.log] [testng] 01:20:32,713 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21eb1aa3 - End of configuration. [testng] [2024-07-22 01:20:32,717] [pool-1-thread-2] Initializing /data/generated/mri-stack8.pcx: [testng] 01:20:32,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:20:32,718 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:32,718 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-22_01-20-32.log] [testng] 01:20:32,718 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46777794 - End of configuration. [testng] [2024-07-22 01:20:34,350] [pool-1-thread-12] Initializing /data/generated/mri-stack3.pcx: [testng] [2024-07-22 01:20:34,353] [pool-1-thread-10] Initializing /data/generated/mri-stack22.pcx: [testng] [2024-07-22 01:20:34,356] [pool-1-thread-9] Initializing /data/generated/mri-stack20.pcx: [testng] [2024-07-22 01:20:34,359] [pool-1-thread-5] Initializing /data/generated/mri-stack19.pcx: [testng] [2024-07-22 01:20:34,362] [pool-1-thread-3] Initializing /data/josh/Screenshots/nd2 color.pcx: [testng] [2024-07-22 01:20:34,367] [pool-1-thread-7] Initializing /data/generated/mri-stack16.pcx: [testng] [2024-07-22 01:20:34,371] [pool-1-thread-4] Initializing /data/josh/Screenshots/slidebooksamezposition.pcx: [testng] [2024-07-22 01:20:34,378] [pool-1-thread-2] Initializing /data/generated/mri-stack1.pcx: [testng] [2024-07-22 01:20:34,381] [pool-1-thread-6] Initializing /data/generated/mri-stack24.pcx: [testng] [2024-07-22 01:20:34,386] [pool-1-thread-1] Initializing /data/generated/mri-stack21.pcx: [testng] [2024-07-22 01:20:34,390] [pool-1-thread-8] Initializing /data/josh/Screenshots/biorad color off.pcx: [testng] [2024-07-22 01:20:34,396] [pool-1-thread-11] Initializing /data/josh/Screenshots/Metamorph image-stack.pcx: [testng] [2024-07-22 01:20:34,663] [pool-1-thread-7] Initializing /data/generated/mri-stack25.pcx: [testng] [2024-07-22 01:20:34,666] [pool-1-thread-2] Initializing /data/generated/mri-stack26.pcx: [testng] [2024-07-22 01:20:34,669] [pool-1-thread-5] Initializing /data/generated/mri-stack9.pcx: [testng] [2024-07-22 01:20:34,712] [pool-1-thread-10] Initializing /data/generated/mri-stack6.pcx: [testng] [2024-07-22 01:20:34,716] [pool-1-thread-9] Initializing /data/generated/mri-stack14.pcx: [testng] [2024-07-22 01:20:34,719] [pool-1-thread-1] Initializing /data/josh/Screenshots/deltavision.pcx: [testng] [2024-07-22 01:20:34,742] [pool-1-thread-12] Initializing /data/generated/mri-stack12.pcx: [testng] [2024-07-22 01:20:34,747] [pool-1-thread-6] Initializing /data/josh/Screenshots/epscolor.pcx: [testng] [2024-07-22 01:20:34,813] [pool-1-thread-2] Initializing /data/josh/Screenshots/fv1000color.pcx: [testng] [2024-07-22 01:20:34,823] [pool-1-thread-7] Initializing /data/generated/mri-stack10.pcx: [testng] [2024-07-22 01:20:34,871] [pool-1-thread-10] Initializing /data/generated/mri-stack0.pcx: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1855, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 8 seconds Finished: SUCCESS