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Started by upstream project "BIOFORMATS-test-repo" build number 128 originally caused by: Started by upstream project "Trigger" build number 145 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins2625678594069635920.sh + '[' samples = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_20011_merge_ci -v /uod/idr/repos/curated/samples:/data -v /uod/idr-scratch/merge-ci/curated/samples:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:25:23,749 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:25:23,749 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:25:24,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:25:24,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:25:24,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:25:24,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:25:24,138 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:25:24,139 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:25:24,139 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:25:24,139 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:25:24,139 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 01:25:24,140 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 01:25:24,141 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 393 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-22 01:25:24,153] [main] java.version = 1.8.0_342 [testng] 01:25:24,158 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:25:24,158 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:24,215 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-22_01-25-24.log] [testng] 01:25:24,217 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-07-22 01:25:24,220] [main] testng.directory = /data [testng] [2024-07-22 01:25:24,220] [main] testng.configDirectory = /config [testng] [2024-07-22 01:25:24,238] [main] testng.multiplier = 1.0 [testng] [2024-07-22 01:25:24,238] [main] testng.in-memory = false [testng] [2024-07-22 01:25:24,238] [main] testng.allow-missing = false [testng] [2024-07-22 01:25:24,238] [main] user.language = fr [testng] [2024-07-22 01:25:24,238] [main] user.country = FR [testng] [2024-07-22 01:25:24,238] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-07-22 01:25:45,021] [main] ---------------------------------------- [testng] [2024-07-22 01:25:45,021] [main] Total files: 164 [testng] [2024-07-22 01:25:45,021] [main] Scan time: 20.783 s (126 ms/file) [testng] [2024-07-22 01:25:45,021] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 59 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-22 01:25:55,458] [pool-1-thread-1] Initializing /data/ome/EXPERIMENT38_w1FITC_t1.STK: [testng] 01:25:55,459 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:25:55,459 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:55,460 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-22_01-25-55.log] [testng] 01:25:55,460 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70af7b44 - End of configuration. [testng] [2024-07-22 01:25:55,494] [pool-1-thread-12] Initializing /data/openjpeg/FacadeERROPJW.bmp: [testng] 01:25:55,494 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:25:55,494 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:55,495 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-22_01-25-55.log] [testng] 01:25:55,495 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53bc9f08 - End of configuration. [testng] [2024-07-22 01:25:55,511] [pool-1-thread-11] Initializing /data/ome/t0_pos1-0_5x.lsm: [testng] 01:25:55,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:25:55,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:55,512 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-22_01-25-55.log] [testng] 01:25:55,513 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5da46c99 - End of configuration. [testng] [2024-07-22 01:25:55,575] [pool-1-thread-10] Initializing /data/ome/Adultmidsection.lsm: [testng] 01:25:55,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:25:55,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:55,576 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-22_01-25-55.log] [testng] 01:25:55,576 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e10fb4f - End of configuration. [testng] [2024-07-22 01:25:55,619] [pool-1-thread-9] Initializing /data/ome/654Atemp.stk: [testng] 01:25:55,619 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:25:55,619 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:55,620 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-22_01-25-55.log] [testng] 01:25:55,621 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ed6227e - End of configuration. [testng] [2024-07-22 01:25:55,798] [pool-1-thread-8] Initializing /data/openjpeg/Cevennes1.bmp: [testng] 01:25:55,798 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:25:55,798 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:55,799 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-22_01-25-55.log] [testng] 01:25:55,800 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cc41813 - End of configuration. [testng] [2024-07-22 01:25:55,811] [pool-1-thread-7] Initializing /data/ome/embryo.lsm: [testng] 01:25:55,812 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:25:55,812 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:55,813 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-22_01-25-55.log] [testng] 01:25:55,814 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42e8d43d - End of configuration. [testng] [2024-07-22 01:25:55,890] [pool-1-thread-6] Initializing /data/openjpeg/thumb_FacadeCOMP.jpg: [testng] 01:25:55,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:25:55,891 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:55,891 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-22_01-25-55.log] [testng] 01:25:55,892 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d1e67be - End of configuration. [testng] [2024-07-22 01:25:55,929] [pool-1-thread-5] Initializing /data/ome/Cmidmusgfp1.lsm: [testng] 01:25:55,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:25:55,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:55,930 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-22_01-25-55.log] [testng] 01:25:55,931 |-INFO in ch.qos.logback.core.sift.SiftProcessor@715d49ba - End of configuration. [testng] [2024-07-22 01:25:55,965] [pool-1-thread-4] Initializing /data/openjpeg/Cevennes1.ppm: [testng] 01:25:55,966 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:25:55,966 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:55,966 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-22_01-25-55.log] [testng] 01:25:55,967 |-INFO in ch.qos.logback.core.sift.SiftProcessor@292e76f2 - End of configuration. [testng] [2024-07-22 01:25:55,976] [pool-1-thread-3] Initializing /data/ome/worm.tiff: [testng] 01:25:55,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:25:55,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:55,977 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-22_01-25-55.log] [testng] 01:25:55,977 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c19c39 - End of configuration. [testng] [2024-07-22 01:25:56,092] [pool-1-thread-2] Initializing /data/ome/nfat10x3 good2_D12_w3.TIF: [testng] 01:25:56,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:25:56,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:56,093 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-22_01-25-56.log] [testng] 01:25:56,093 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6894524b - End of configuration. [testng] [2024-07-22 01:26:00,298] [pool-1-thread-6] Initializing /data/ome/C1.lsm: [testng] [2024-07-22 01:26:00,319] [pool-1-thread-5] Initializing /data/ome/PA-SDS-RFP-CenB_w1GFP_t1.stk: [testng] [2024-07-22 01:26:00,399] [pool-1-thread-1] Initializing /data/ome/C1midmusnorm.lsm: [testng] [2024-07-22 01:26:00,414] [pool-1-thread-10] Initializing /data/ome/anusgfpzs.lsm: [testng] [2024-07-22 01:26:00,436] [pool-1-thread-7] Initializing /data/sdub/sdub.pattern: [testng] [2024-07-22 01:26:00,556] [pool-1-thread-2] Initializing /data/openjpeg/thumb_Bretagne2.jpg: [testng] [2024-07-22 01:26:00,565] [pool-1-thread-9] Initializing /data/ome/arwen0205_raw00201.pic: [testng] [2024-07-22 01:26:00,586] [pool-1-thread-11] Initializing /data/openjpeg/Rome.ppm: [testng] [2024-07-22 01:26:00,589] [pool-1-thread-4] Initializing /data/openjpeg/Facade.bmp: [testng] [2024-07-22 01:26:00,831] [pool-1-thread-2] Initializing /data/openjpeg/Bretagne1.bmp: [testng] [2024-07-22 01:26:00,890] [pool-1-thread-11] Initializing /data/openjpeg/Cevennes2.jp2: [testng] [2024-07-22 01:26:01,221] [pool-1-thread-12] Initializing /data/openjpeg/Facade.pnm: [testng] [2024-07-22 01:26:01,297] [pool-1-thread-6] Initializing /data/ome/cb_1.r3d: [testng] [2024-07-22 01:26:01,409] [pool-1-thread-8] Initializing /data/ome/tiffany.color.tiff: [testng] [2024-07-22 01:26:01,465] [pool-1-thread-1] Initializing /data/openjpeg/Rome.bmp: [testng] [2024-07-22 01:26:01,471] [pool-1-thread-3] Initializing /data/openjpeg/Bretagne1.j2k: [testng] [2024-07-22 01:26:01,486] [pool-1-thread-10] Initializing /data/openjpeg/Bretagne2.ppm: [testng] [2024-07-22 01:26:01,610] [pool-1-thread-2] Initializing /data/ome/nfat10x3 good2_D12_w1.TIF: [testng] [2024-07-22 01:26:01,941] [pool-1-thread-1] Initializing /data/ome/compressed2ChZ.lsm: [testng] [2024-07-22 01:26:02,249] [pool-1-thread-7] Initializing /data/ome/tinyTest.d3d.dv: [testng] [2024-07-22 01:26:02,255] [pool-1-thread-5] Initializing /data/openjpeg/Cevennes2.ppm: [testng] [2024-07-22 01:26:02,425] [pool-1-thread-7] Initializing /data/openjpeg/thumb_facade.jpg: [testng] [2024-07-22 01:26:02,447] [pool-1-thread-8] Initializing /data/openjpeg/Bretagne2.bmp: [testng] [2024-07-22 01:26:02,755] [pool-1-thread-6] Initializing /data/mouse-kidney/mouse-kidney.lif: [testng] [2024-07-22 01:26:02,817] [pool-1-thread-5] Initializing /data/ome/210502-0min-NFKB-4.r3d: [testng] [2024-07-22 01:26:02,833] [pool-1-thread-2] Initializing /data/ome/011B1_Morph.HTD: [testng] [2024-07-22 01:26:03,416] [pool-1-thread-7] Initializing /data/openjpeg/Cevennes1.j2k: [testng] [2024-07-22 01:26:03,444] [pool-1-thread-9] Initializing /data/ome/CHOBI_d3d.dv: [testng] [2024-07-22 01:26:03,625] [pool-1-thread-12] Initializing /data/openjpeg/Rome.jp2: [testng] [2024-07-22 01:26:03,859] [pool-1-thread-1] Initializing /data/openjpeg/Cevennes2.bmp: [testng] [2024-07-22 01:26:03,888] [pool-1-thread-9] Initializing /data/ome/C1lowmusgfp.lsm: [testng] [2024-07-22 01:26:03,954] [pool-1-thread-11] Initializing /data/kidney_TFl/kidney_TFl.pattern: [testng] [2024-07-22 01:26:04,332] [pool-1-thread-1] Initializing /data/openjpeg/thumb_Cevennes2.jpg: [testng] [2024-07-22 01:26:04,339] [pool-1-thread-5] Initializing /data/ome/nfat10x3 good2_D12_w2.TIF: [testng] [2024-07-22 01:26:04,378] [pool-1-thread-6] Initializing /data/openjpeg/thumb_Cevennes1.jpg: [testng] [2024-07-22 01:26:04,390] [pool-1-thread-3] Initializing /data/openjpeg/Bretagne1.ppm: [testng] [2024-07-22 01:26:04,422] [pool-1-thread-9] Initializing /data/ome/n2_plate18_P24_w1.tif: [testng] [2024-07-22 01:26:04,531] [pool-1-thread-1] Initializing /data/TAABA/TAABA.pattern: [testng] [2024-07-22 01:26:05,575] [pool-1-thread-4] Initializing /data/ome/t1_pos1-0_5x.lsm: [testng] [2024-07-22 01:26:05,675] [pool-1-thread-6] Initializing /data/openjpeg/Bretagne2.j2k: [testng] [2024-07-22 01:26:05,744] [pool-1-thread-3] Initializing /data/openjpeg/thumb_Rome.jpg: [testng] [2024-07-22 01:26:05,781] [pool-1-thread-11] Initializing /data/ome/Cpharynxzs1.lsm: [testng] [2024-07-22 01:26:05,816] [pool-1-thread-10] Initializing /data/openjpeg/FacadeERROPJ.bmp: [testng] [2024-07-22 01:26:05,880] [pool-1-thread-3] Initializing /data/openjpeg/thumb_Bretagne1.jpg: [testng] [2024-07-22 01:26:05,951] [pool-1-thread-9] Initializing /data/10-31 E1/10-31 E1.tif: [testng] [2024-07-22 01:26:06,122] [pool-1-thread-5] Initializing /data/ome/PA-tub-wtmcakthurs-5_w1GFP_t1.STK: [testng] [2024-07-22 01:26:06,266] [pool-1-thread-3] Initializing /data/openjpeg/thumb_Speedway.jpg: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 3127, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 2 minutes 25 seconds Finished: SUCCESS