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Started by upstream project "BIOFORMATS-test-repo" build number 129 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins13982228771111186171.sh + '[' pcx = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_20146_merge_ci -v /uod/idr/repos/curated/pcx:/data -v /uod/idr-scratch/merge-ci/curated/pcx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 13:51:48,562 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 13:51:48,563 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 13:51:48,563 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 13:51:48,564 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 13:51:48,565 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 13:51:48,565 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 13:51:48,565 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 13:51:48,565 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 13:51:48,565 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 13:51:48,566 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 13:51:48,566 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 13:51:48,566 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 13:51:48,775 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 13:51:48,775 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 13:51:48,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 13:51:48,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 13:51:48,808 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 13:51:48,808 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 13:51:48,808 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 13:51:48,809 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 13:51:48,809 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 13:51:48,810 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 13:51:48,810 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 245 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-22 13:51:48,819] [main] java.version = 1.8.0_342 [testng] 13:51:48,822 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 13:51:48,822 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:51:48,865 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-22_13-51-48.log] [testng] 13:51:48,866 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-07-22 13:51:48,868] [main] testng.directory = /data [testng] [2024-07-22 13:51:48,868] [main] testng.configDirectory = /config [testng] [2024-07-22 13:51:48,880] [main] testng.multiplier = 1.0 [testng] [2024-07-22 13:51:48,880] [main] testng.in-memory = false [testng] [2024-07-22 13:51:48,880] [main] testng.allow-missing = false [testng] [2024-07-22 13:51:48,880] [main] user.language = fr [testng] [2024-07-22 13:51:48,880] [main] user.country = FR [testng] [2024-07-22 13:51:48,880] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-07-22 13:51:49,373] [main] ---------------------------------------- [testng] [2024-07-22 13:51:49,373] [main] Total files: 36 [testng] [2024-07-22 13:51:49,373] [main] Scan time: 0.493 s (13 ms/file) [testng] [2024-07-22 13:51:49,373] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 35 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-22 13:51:51,178] [pool-1-thread-1] Initializing /data/generated/mri-stack13.pcx: [testng] 13:51:51,179 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 13:51:51,179 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:51:51,180 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-22_13-51-51.log] [testng] 13:51:51,181 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75d2228c - End of configuration. [testng] [2024-07-22 13:51:51,218] [pool-1-thread-12] Initializing /data/generated/mri-stack23.pcx: [testng] 13:51:51,219 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 13:51:51,219 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:51:51,220 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-22_13-51-51.log] [testng] 13:51:51,220 |-INFO in ch.qos.logback.core.sift.SiftProcessor@518b531c - End of configuration. [testng] [2024-07-22 13:51:51,224] [pool-1-thread-11] Initializing /data/josh/Screenshots/leica-lif.pcx: [testng] 13:51:51,224 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 13:51:51,224 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:51:51,225 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-22_13-51-51.log] [testng] 13:51:51,225 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e56cd36 - End of configuration. [testng] [2024-07-22 13:51:51,232] [pool-1-thread-10] Initializing /data/generated/mri-stack17.pcx: [testng] 13:51:51,232 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 13:51:51,232 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:51:51,233 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-22_13-51-51.log] [testng] 13:51:51,233 |-INFO in ch.qos.logback.core.sift.SiftProcessor@559492d1 - End of configuration. [testng] [2024-07-22 13:51:51,239] [pool-1-thread-9] Initializing /data/generated/mri-stack5.pcx: [testng] 13:51:51,239 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 13:51:51,239 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:51:51,240 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-22_13-51-51.log] [testng] 13:51:51,240 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11cf9802 - End of configuration. [testng] [2024-07-22 13:51:51,245] [pool-1-thread-8] Initializing /data/generated/mri-stack7.pcx: [testng] 13:51:51,245 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 13:51:51,245 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:51:51,246 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-22_13-51-51.log] [testng] 13:51:51,246 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17a1a001 - End of configuration. [testng] [2024-07-22 13:51:51,250] [pool-1-thread-7] Initializing /data/generated/mri-stack11.pcx: [testng] 13:51:51,250 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 13:51:51,250 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:51:51,250 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-22_13-51-51.log] [testng] 13:51:51,251 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30039acd - End of configuration. [testng] [2024-07-22 13:51:51,255] [pool-1-thread-6] Initializing /data/generated/mri-stack4.pcx: [testng] 13:51:51,255 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 13:51:51,255 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:51:51,255 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-22_13-51-51.log] [testng] 13:51:51,256 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6cf887b7 - End of configuration. [testng] [2024-07-22 13:51:51,260] [pool-1-thread-5] Initializing /data/generated/mri-stack15.pcx: [testng] 13:51:51,260 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 13:51:51,260 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:51:51,261 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-22_13-51-51.log] [testng] 13:51:51,261 |-INFO in ch.qos.logback.core.sift.SiftProcessor@92259f6 - End of configuration. [testng] [2024-07-22 13:51:51,265] [pool-1-thread-4] Initializing /data/generated/mri-stack2.pcx: [testng] 13:51:51,265 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 13:51:51,265 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:51:51,265 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-22_13-51-51.log] [testng] 13:51:51,266 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a48b06f - End of configuration. [testng] [2024-07-22 13:51:51,269] [pool-1-thread-3] Initializing /data/generated/mri-stack18.pcx: [testng] 13:51:51,269 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 13:51:51,269 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:51:51,270 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-22_13-51-51.log] [testng] 13:51:51,270 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f2e474e - End of configuration. [testng] [2024-07-22 13:51:51,274] [pool-1-thread-2] Initializing /data/generated/mri-stack8.pcx: [testng] 13:51:51,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 13:51:51,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:51:51,274 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-22_13-51-51.log] [testng] 13:51:51,274 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16850da4 - End of configuration. [testng] [2024-07-22 13:51:53,042] [pool-1-thread-9] Initializing /data/generated/mri-stack3.pcx: [testng] [2024-07-22 13:51:53,047] [pool-1-thread-7] Initializing /data/generated/mri-stack22.pcx: [testng] [2024-07-22 13:51:53,051] [pool-1-thread-10] Initializing /data/generated/mri-stack20.pcx: [testng] [2024-07-22 13:51:53,054] [pool-1-thread-5] Initializing /data/generated/mri-stack19.pcx: [testng] [2024-07-22 13:51:53,057] [pool-1-thread-2] Initializing /data/josh/Screenshots/nd2 color.pcx: [testng] [2024-07-22 13:51:53,062] [pool-1-thread-1] Initializing /data/generated/mri-stack16.pcx: [testng] [2024-07-22 13:51:53,065] [pool-1-thread-8] Initializing /data/josh/Screenshots/slidebooksamezposition.pcx: [testng] [2024-07-22 13:51:53,070] [pool-1-thread-6] Initializing /data/generated/mri-stack1.pcx: [testng] [2024-07-22 13:51:53,073] [pool-1-thread-3] Initializing /data/generated/mri-stack24.pcx: [testng] [2024-07-22 13:51:53,076] [pool-1-thread-12] Initializing /data/generated/mri-stack21.pcx: [testng] [2024-07-22 13:51:53,079] [pool-1-thread-4] Initializing /data/josh/Screenshots/biorad color off.pcx: [testng] [2024-07-22 13:51:53,087] [pool-1-thread-11] Initializing /data/josh/Screenshots/Metamorph image-stack.pcx: [testng] [2024-07-22 13:51:53,415] [pool-1-thread-7] Initializing /data/generated/mri-stack25.pcx: [testng] [2024-07-22 13:51:53,419] [pool-1-thread-10] Initializing /data/generated/mri-stack26.pcx: [testng] [2024-07-22 13:51:53,421] [pool-1-thread-6] Initializing /data/generated/mri-stack9.pcx: [testng] [2024-07-22 13:51:53,468] [pool-1-thread-3] Initializing /data/generated/mri-stack6.pcx: [testng] [2024-07-22 13:51:53,471] [pool-1-thread-9] Initializing /data/josh/Screenshots/epscolor.pcx: [testng] [2024-07-22 13:51:53,476] [pool-1-thread-1] Initializing /data/generated/mri-stack12.pcx: [testng] [2024-07-22 13:51:53,479] [pool-1-thread-12] Initializing /data/generated/mri-stack14.pcx: [testng] [2024-07-22 13:51:53,481] [pool-1-thread-5] Initializing /data/josh/Screenshots/deltavision.pcx: [testng] [2024-07-22 13:51:53,583] [pool-1-thread-6] Initializing /data/josh/Screenshots/fv1000color.pcx: [testng] [2024-07-22 13:51:53,589] [pool-1-thread-7] Initializing /data/generated/mri-stack10.pcx: [testng] [2024-07-22 13:51:53,602] [pool-1-thread-10] Initializing /data/generated/mri-stack0.pcx: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1855, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 8 seconds Finished: SUCCESS