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Started by upstream project "BIOFORMATS-test-repo" build number 129 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins7064356222038147887.sh + '[' gatan = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_20148_merge_ci -v /uod/idr/repos/curated/gatan:/data -v /uod/idr-scratch/merge-ci/curated/gatan:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 13:51:57,309 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 13:51:57,311 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 13:51:57,311 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 13:51:57,312 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 13:51:57,312 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 13:51:57,312 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 13:51:57,312 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 13:51:57,312 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 13:51:57,313 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 13:51:57,313 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 13:51:57,313 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 13:51:57,313 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 13:51:57,526 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 13:51:57,526 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 13:51:57,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 13:51:57,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 13:51:57,560 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 13:51:57,560 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 13:51:57,560 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 13:51:57,560 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 13:51:57,560 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 13:51:57,561 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 13:51:57,561 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 248 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-22 13:51:57,571] [main] java.version = 1.8.0_342 [testng] 13:51:57,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 13:51:57,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:51:57,617 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-22_13-51-57.log] [testng] 13:51:57,618 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-07-22 13:51:57,620] [main] testng.directory = /data [testng] [2024-07-22 13:51:57,620] [main] testng.configDirectory = /config [testng] [2024-07-22 13:51:57,632] [main] testng.multiplier = 1.0 [testng] [2024-07-22 13:51:57,632] [main] testng.in-memory = false [testng] [2024-07-22 13:51:57,632] [main] testng.allow-missing = false [testng] [2024-07-22 13:51:57,632] [main] user.language = fr [testng] [2024-07-22 13:51:57,632] [main] user.country = FR [testng] [2024-07-22 13:51:57,632] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-07-22 13:51:58,726] [main] ---------------------------------------- [testng] [2024-07-22 13:51:58,726] [main] Total files: 103 [testng] [2024-07-22 13:51:58,726] [main] Scan time: 1.094 s (10 ms/file) [testng] [2024-07-22 13:51:58,726] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 98 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-22 13:52:06,936] [pool-1-thread-1] Initializing /data/public/imagesc-36590/SmallMontage0005.dm4: [testng] 13:52:06,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 13:52:06,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:06,937 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-22_13-52-06.log] [testng] 13:52:06,938 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6333147a - End of configuration. [testng] [2024-07-22 13:52:06,977] [pool-1-thread-12] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0019.dm4: [testng] 13:52:06,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 13:52:06,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:06,978 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-22_13-52-06.log] [testng] 13:52:06,978 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c2c2fca - End of configuration. [testng] [2024-07-22 13:52:06,991] [pool-1-thread-11] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0003.dm4: [testng] 13:52:06,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 13:52:06,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:06,992 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-22_13-52-06.log] [testng] 13:52:06,993 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d00b033 - End of configuration. [testng] [2024-07-22 13:52:07,006] [pool-1-thread-10] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-128x128.tif: [testng] 13:52:07,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 13:52:07,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:07,007 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-22_13-52-07.log] [testng] 13:52:07,007 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e069031 - End of configuration. [testng] [2024-07-22 13:52:07,050] [pool-1-thread-9] Initializing /data/qa-11392/Example_Gatan_File.dm4: [testng] 13:52:07,050 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 13:52:07,050 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:07,051 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-22_13-52-07.log] [testng] 13:52:07,052 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7312362b - End of configuration. [testng] [2024-07-22 13:52:07,069] [pool-1-thread-8] Initializing /data/sindhu/cropped/JC76-G1-80000.0V-15000X-Sindhu-362-1020x1020.tif: [testng] 13:52:07,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 13:52:07,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:07,071 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-22_13-52-07.log] [testng] 13:52:07,071 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22263f84 - End of configuration. [testng] [2024-07-22 13:52:07,155] [pool-1-thread-7] Initializing /data/qa-8007/Prefix_3VBSED_slice_0011.dm3: [testng] 13:52:07,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 13:52:07,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:07,156 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-22_13-52-07.log] [testng] 13:52:07,156 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3877f025 - End of configuration. [testng] [2024-07-22 13:52:07,168] [pool-1-thread-6] Initializing /data/thorsten/60kx_HAADF_03.dm3: [testng] 13:52:07,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 13:52:07,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:07,169 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-22_13-52-07.log] [testng] 13:52:07,170 |-INFO in ch.qos.logback.core.sift.SiftProcessor@316bcdc2 - End of configuration. [testng] [2024-07-22 13:52:07,190] [pool-1-thread-5] Initializing /data/jay/Carbon.34.dm3: [testng] 13:52:07,191 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 13:52:07,191 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:07,191 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-22_13-52-07.log] [testng] 13:52:07,192 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53278f75 - End of configuration. [testng] [2024-07-22 13:52:07,213] [pool-1-thread-4] Initializing /data/jay/dnasample1.dm3: [testng] 13:52:07,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 13:52:07,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:07,214 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-22_13-52-07.log] [testng] 13:52:07,214 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29faed0a - End of configuration. [testng] [2024-07-22 13:52:07,346] [pool-1-thread-3] Initializing /data/jay/camtest1.dm3: [testng] 13:52:07,346 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 13:52:07,346 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:07,347 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-22_13-52-07.log] [testng] 13:52:07,348 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1842b769 - End of configuration. [testng] [2024-07-22 13:52:07,381] [pool-1-thread-2] Initializing /data/jay/ViewDMtest.dm3: [testng] 13:52:07,382 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 13:52:07,382 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:07,382 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-22_13-52-07.log] [testng] 13:52:07,383 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63e10cf0 - End of configuration. [testng] [2024-07-22 13:52:09,242] [pool-1-thread-10] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0052.dm4: [testng] [2024-07-22 13:52:09,253] [pool-1-thread-1] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0018.dm4: [testng] [2024-07-22 13:52:09,532] [pool-1-thread-6] Initializing /data/jay/biosamplefullframe.dm3: [testng] [2024-07-22 13:52:09,761] [pool-1-thread-7] Initializing /data/qa-21652/E coli phage H2O_100000.0V_67000X.tif: [testng] [2024-07-22 13:52:10,390] [pool-1-thread-8] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0009.dm4: [testng] [2024-07-22 13:52:10,838] [pool-1-thread-12] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-360.dm3: [testng] [2024-07-22 13:52:10,920] [pool-1-thread-11] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0053.dm4: [testng] [2024-07-22 13:52:11,740] [pool-1-thread-7] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-364.dm3: [testng] [2024-07-22 13:52:12,592] [pool-1-thread-1] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-362.tif: [testng] [2024-07-22 13:52:12,904] [pool-1-thread-8] Initializing /data/melissa/annotation-test.dm3: [testng] [2024-07-22 13:52:13,115] [pool-1-thread-8] Initializing /data/ofra/Co on INT 28-12-10.11.dm3: [testng] [2024-07-22 13:52:13,442] [pool-1-thread-4] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-363.dm3: [testng] [2024-07-22 13:52:13,501] [pool-1-thread-5] Initializing /data/ofra/lowloss.dm3: [testng] [2024-07-22 13:52:13,506] [pool-1-thread-8] Initializing /data/imagesc-3719/Heart_BSE_slice_0019.dm4: [testng] [2024-07-22 13:52:13,753] [pool-1-thread-3] Initializing /data/jay/samples/APC2a-e5.dm3: [testng] [2024-07-22 13:52:13,766] [pool-1-thread-2] Initializing /data/jay/samples/APC2a-e3.dm3: [testng] [2024-07-22 13:52:13,834] [pool-1-thread-5] Initializing /data/public/imagesc-36590/SmallMontage0007.dm4: [testng] [2024-07-22 13:52:14,198] [pool-1-thread-5] Initializing /data/jay/DMtest2.dm3: [testng] [2024-07-22 13:52:14,566] [pool-1-thread-3] Initializing /data/imagesc-3719/Prefix_BSE_slice_0001.dm4: [testng] [2024-07-22 13:52:14,618] [pool-1-thread-2] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0005.dm4: [testng] [2024-07-22 13:52:15,024] [pool-1-thread-6] Initializing /data/public/imagesc-36590/SmallMontage0003.dm4: [testng] [2024-07-22 13:52:15,605] [pool-1-thread-6] Initializing /data/qa-7642/8.dm4: [testng] [2024-07-22 13:52:15,680] [pool-1-thread-9] Initializing /data/public/EMPIAR/EMPIAR-10013/BGal_000438_frames.dm4: [testng] [2024-07-22 13:52:15,995] [pool-1-thread-12] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-96x96.tif: [testng] [2024-07-22 13:52:17,199] [pool-1-thread-12] Initializing /data/melissa/annotation-test.tif: [testng] [2024-07-22 13:52:17,391] [pool-1-thread-6] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0001.dm4: [testng] [2024-07-22 13:52:17,433] [pool-1-thread-7] Initializing /data/qa-21761/example.dm4: [testng] [2024-07-22 13:52:17,588] [pool-1-thread-12] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0046.dm4: [testng] [2024-07-22 13:52:17,731] [pool-1-thread-2] Initializing /data/jay/recAmaghi.dm3: [testng] [2024-07-22 13:52:18,497] [pool-1-thread-7] Initializing /data/jay/samples/APC2a-e3.tif: [testng] [2024-07-22 13:52:19,556] [pool-1-thread-4] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0048.dm4: [testng] [2024-07-22 13:52:20,009] [pool-1-thread-1] Initializing /data/jayne/AM-2/MonGb2-S8.dm3: [testng] [2024-07-22 13:52:20,211] [pool-1-thread-8] Initializing /data/samples/mode-metadata/mode_format_test.dm3: [testng] [2024-07-22 13:52:20,298] [pool-1-thread-6] Initializing /data/public/imagesc-36590/SmallMontage0008.dm4: [testng] [2024-07-22 13:52:20,443] [pool-1-thread-5] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-256x256.tif: [testng] [2024-07-22 13:52:20,483] [pool-1-thread-7] Initializing /data/qa-21647/Sample2_L1-0002.dm4: [testng] [2024-07-22 13:52:21,679] [pool-1-thread-6] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0015.dm4: [testng] [2024-07-22 13:52:21,886] [pool-1-thread-5] Initializing /data/public/imagesc-36590/SmallMontage0004.dm4: [testng] [2024-07-22 13:52:22,433] [pool-1-thread-7] Initializing /data/public/imagesc-36590/SmallMontage0006.dm4: [testng] [2024-07-22 13:52:22,590] [pool-1-thread-5] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-364.tif: [testng] [2024-07-22 13:52:22,875] [pool-1-thread-7] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0016.dm4: [testng] [2024-07-22 13:52:24,284] [pool-1-thread-2] Initializing /data/nuno/Prefix_3VBSED_stack_30_slice_0290.dm3: [testng] [2024-07-22 13:52:24,820] [pool-1-thread-6] Initializing /data/chip/Nanogold-1.dm3: [testng] [2024-07-22 13:52:26,447] [pool-1-thread-1] Initializing /data/jay/smallerfile.dm3: [testng] [2024-07-22 13:52:26,810] [pool-1-thread-7] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0012.dm4: [testng] [2024-07-22 13:52:27,519] [pool-1-thread-1] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0008.dm4: [testng] [2024-07-22 13:52:27,624] [pool-1-thread-9] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-26000X-Sindhu-364.tif: [testng] [2024-07-22 13:52:27,916] [pool-1-thread-8] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0047.dm4: [testng] [2024-07-22 13:52:29,242] [pool-1-thread-6] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-362-smaller.tif: [testng] [2024-07-22 13:52:29,809] [pool-1-thread-7] Initializing /data/public/imagesc-36590/SmallMontage0002.dm4: [testng] [2024-07-22 13:52:30,225] [pool-1-thread-5] Initializing /data/public/imagesc-36590/SmallMontage0001.dm4: [testng] [2024-07-22 13:52:30,333] [pool-1-thread-7] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-360.tif: [testng] [2024-07-22 13:52:30,391] [pool-1-thread-6] Initializing /data/jay/samples/APC2a-e4.dm3: [testng] [2024-07-22 13:52:30,637] [pool-1-thread-1] Initializing /data/samples/test-tiles.dm3: [testng] [2024-07-22 13:52:30,814] [pool-1-thread-5] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0011.dm4: [testng] [2024-07-22 13:52:31,092] [pool-1-thread-1] Initializing /data/jayne/AM-2/MonGb3-S3.dm3: [testng] [2024-07-22 13:52:31,649] [pool-1-thread-6] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-360.tif: [testng] [2024-07-22 13:52:33,329] [pool-1-thread-5] Initializing /data/jay/samples/APC2a-e5.tif: [testng] [2024-07-22 13:52:34,930] [pool-1-thread-5] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0045.dm4: [testng] [2024-07-22 13:52:35,150] [pool-1-thread-9] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0000.dm4: [testng] [2024-07-22 13:52:35,634] [pool-1-thread-1] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0050.dm4: [testng] [2024-07-22 13:52:36,491] [pool-1-thread-2] Initializing /data/jay/biosamplefullframetif.tif: [testng] [2024-07-22 13:52:37,625] [pool-1-thread-7] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0013.dm4: [testng] [2024-07-22 13:52:38,383] [pool-1-thread-9] Initializing /data/nuno/Prefix_3VBSED_slice_0011.dm3: [testng] [2024-07-22 13:52:38,778] [pool-1-thread-3] Initializing /data/qa-21652/E coli phage H2O_100000.0V_67000X.dm4: [testng] [2024-07-22 13:52:39,453] [pool-1-thread-3] Initializing /data/jay/recAmag6500dm.dm3: [testng] [2024-07-22 13:52:39,902] [pool-1-thread-9] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0014.dm4: [testng] [2024-07-22 13:52:39,951] [pool-1-thread-7] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0017.dm4: [testng] [2024-07-22 13:52:40,157] [pool-1-thread-6] Initializing /data/public/imagesc-36590/SmallMontage0000.dm4: [testng] [2024-07-22 13:52:40,696] [pool-1-thread-6] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-362.tif: [testng] [2024-07-22 13:52:42,697] [pool-1-thread-9] Initializing /data/jayne/AM-2/MonGb2-S9.dm3: [testng] [2024-07-22 13:52:42,754] [pool-1-thread-7] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0004.dm4: [testng] [2024-07-22 13:52:45,086] [pool-1-thread-2] Initializing /data/jay/DMtest.dm3: [testng] [2024-07-22 13:52:45,551] [pool-1-thread-10] Initializing /data/jayne/AM-2/MonGb2-S7.dm3: [testng] [2024-07-22 13:52:46,359] [pool-1-thread-3] Initializing /data/jayne/AM-2/MonGb3-S1.dm3: [testng] [2024-07-22 13:52:46,441] [pool-1-thread-7] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0049.dm4: [testng] [2024-07-22 13:52:46,670] [pool-1-thread-6] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0010.dm4: [testng] [2024-07-22 13:52:47,113] [pool-1-thread-9] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0007.dm4: [testng] [2024-07-22 13:52:47,147] [pool-1-thread-11] Initializing /data/jay/dnasample.tif: [testng] [2024-07-22 13:52:49,393] [pool-1-thread-6] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-480x480.tif: [testng] [2024-07-22 13:52:49,634] [pool-1-thread-9] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0051.dm4: [testng] [2024-07-22 13:52:50,351] [pool-1-thread-6] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0006.dm4: [testng] [2024-07-22 13:52:50,643] [pool-1-thread-12] Initializing /data/sindhu/cropped/JC76-G1-80000.0V-15000X-Sindhu-362-799x799.tif: [testng] [2024-07-22 13:52:51,331] [pool-1-thread-2] Initializing /data/jay/samples/APC2a-e4.tif: [testng] [2024-07-22 13:52:51,475] [pool-1-thread-10] Initializing /data/jay/graphitedm3.dm3: [testng] [2024-07-22 13:52:51,542] [pool-1-thread-3] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0002.dm4: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 5194, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 18 seconds Finished: SUCCESS