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Started by upstream project "BIOFORMATS-test-repo" build number 129 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins7959763128138781242.sh + '[' fei = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_20173_merge_ci -v /uod/idr/repos/curated/fei:/data -v /uod/idr-scratch/merge-ci/curated/fei:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 13:54:07,975 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 13:54:07,977 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 13:54:07,977 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 13:54:07,978 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 13:54:07,978 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 13:54:07,979 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 13:54:07,979 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 13:54:07,979 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 13:54:07,979 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 13:54:07,980 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 13:54:07,980 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 13:54:07,980 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 13:54:08,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 13:54:08,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 13:54:08,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 13:54:08,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 13:54:08,283 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 13:54:08,283 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 13:54:08,284 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 13:54:08,284 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 13:54:08,284 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 13:54:08,285 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 13:54:08,285 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 306 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-22 13:54:08,296] [main] java.version = 1.8.0_342 [testng] 13:54:08,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 13:54:08,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:54:08,348 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-22_13-54-08.log] [testng] 13:54:08,350 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-07-22 13:54:08,352] [main] testng.directory = /data [testng] [2024-07-22 13:54:08,352] [main] testng.configDirectory = /config [testng] [2024-07-22 13:54:08,365] [main] testng.multiplier = 1.0 [testng] [2024-07-22 13:54:08,365] [main] testng.in-memory = false [testng] [2024-07-22 13:54:08,365] [main] testng.allow-missing = false [testng] [2024-07-22 13:54:08,365] [main] user.language = fr [testng] [2024-07-22 13:54:08,365] [main] user.country = FR [testng] [2024-07-22 13:54:08,365] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-07-22 13:54:09,539] [main] ---------------------------------------- [testng] [2024-07-22 13:54:09,539] [main] Total files: 21 [testng] [2024-07-22 13:54:09,539] [main] Scan time: 1.174 s (55 ms/file) [testng] [2024-07-22 13:54:09,540] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-22 13:54:11,231] [pool-1-thread-1] Initializing /data/peter/ZC_PTCS_ED_1000x_002.tif: [testng] 13:54:11,231 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 13:54:11,232 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:54:11,233 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-22_13-54-11.log] [testng] 13:54:11,233 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a97932f - End of configuration. [testng] [2024-07-22 13:54:11,279] [pool-1-thread-12] Initializing /data/venu/VENU03.TIF: [testng] 13:54:11,280 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 13:54:11,280 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:54:11,280 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-22_13-54-11.log] [testng] 13:54:11,281 |-INFO in ch.qos.logback.core.sift.SiftProcessor@514ae4e1 - End of configuration. [testng] [2024-07-22 13:54:11,319] [pool-1-thread-11] Initializing /data/venu/VENU_Five.TIF: [testng] 13:54:11,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 13:54:11,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:54:11,320 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-22_13-54-11.log] [testng] 13:54:11,321 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56b46ade - End of configuration. [testng] [2024-07-22 13:54:11,346] [pool-1-thread-10] Initializing /data/venu/VENU01.TIF: [testng] 13:54:11,346 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 13:54:11,346 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:54:11,347 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-22_13-54-11.log] [testng] 13:54:11,347 |-INFO in ch.qos.logback.core.sift.SiftProcessor@177eb6a - End of configuration. [testng] [2024-07-22 13:54:11,385] [pool-1-thread-9] Initializing /data/venu/VENU_Seven.TIF: [testng] 13:54:11,385 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 13:54:11,385 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:54:11,386 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-22_13-54-11.log] [testng] 13:54:11,386 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5288cacd - End of configuration. [testng] [2024-07-22 13:54:11,410] [pool-1-thread-8] Initializing /data/venu/VENU02.IMG: [testng] 13:54:11,411 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 13:54:11,411 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:54:11,411 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-22_13-54-11.log] [testng] 13:54:11,412 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45318e8e - End of configuration. [testng] [2024-07-22 13:54:11,425] [pool-1-thread-7] Initializing /data/venu/VENU_Four.TIF: [testng] 13:54:11,426 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 13:54:11,426 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:54:11,426 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-22_13-54-11.log] [testng] 13:54:11,427 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a0926e6 - End of configuration. [testng] [2024-07-22 13:54:11,452] [pool-1-thread-6] Initializing /data/venu/VENU_Six.TIF: [testng] 13:54:11,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 13:54:11,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:54:11,453 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-22_13-54-11.log] [testng] 13:54:11,454 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f1986aa - End of configuration. [testng] [2024-07-22 13:54:11,480] [pool-1-thread-5] Initializing /data/venu/VENU.TIF: [testng] 13:54:11,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 13:54:11,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:54:11,481 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-22_13-54-11.log] [testng] 13:54:11,481 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5395d14b - End of configuration. [testng] [2024-07-22 13:54:11,516] [pool-1-thread-4] Initializing /data/steffen/Batman_008.tif: [testng] 13:54:11,516 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 13:54:11,516 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:54:11,517 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-22_13-54-11.log] [testng] 13:54:11,517 |-INFO in ch.qos.logback.core.sift.SiftProcessor@619ee1d9 - End of configuration. [testng] [2024-07-22 13:54:11,550] [pool-1-thread-3] Initializing /data/qa-4264/08.51.17 CCD Acquire-Acquire CCD Image Display-Acquire CCD -0.tif: [testng] 13:54:11,550 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 13:54:11,550 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:54:11,551 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-22_13-54-11.log] [testng] 13:54:11,551 |-INFO in ch.qos.logback.core.sift.SiftProcessor@540bdbec - End of configuration. [testng] [2024-07-22 13:54:11,606] [pool-1-thread-2] Initializing /data/venu/VENU03.IMG: [testng] 13:54:11,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 13:54:11,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:54:11,608 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-22_13-54-11.log] [testng] 13:54:11,608 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61a0f2d3 - End of configuration. [testng] [2024-07-22 13:54:13,653] [pool-1-thread-9] Initializing /data/qa-10514/TITAN_FEI_TIFF_Test_Image.tif: [testng] [2024-07-22 13:54:13,684] [pool-1-thread-8] Initializing /data/venu/VENU02.TIF: [testng] [2024-07-22 13:54:13,730] [pool-1-thread-2] Initializing /data/antoine/Tile_001-002-000_0-000.tif: [testng] [2024-07-22 13:54:13,812] [pool-1-thread-1] Initializing /data/venu/VENU01.IMG: [testng] [2024-07-22 13:54:13,838] [pool-1-thread-12] Initializing /data/venu/VENU_Eight.TIF: [testng] [2024-07-22 13:54:13,871] [pool-1-thread-10] Initializing /data/qa-11061/Tile_020-009-000_0.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 11 seconds Finished: SUCCESS