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Started by upstream project "BIOFORMATS-test-repo" build number 17 originally caused by: Started by upstream project "Trigger" build number 20 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins16201334265399170103.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_2025_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 00:51:29,524 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:51:29,526 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 00:51:29,526 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:51:29,527 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:51:29,527 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:51:29,528 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:51:29,528 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:51:29,528 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:51:29,529 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:51:29,529 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:51:29,530 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:51:29,530 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:51:29,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:51:29,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:51:29,793 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:51:29,793 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:51:29,801 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:51:29,801 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:51:29,802 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:51:29,803 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:51:29,803 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 00:51:29,804 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 00:51:29,804 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 275 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-03-30 00:51:29,815] [main] java.version = 11.0.16 [testng] 00:51:29,819 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:51:29,819 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:29,871 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-30_00-51-29.log] [testng] 00:51:29,873 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-03-30 00:51:29,876] [main] testng.directory = /data [testng] [2024-03-30 00:51:29,876] [main] testng.configDirectory = /config [testng] [2024-03-30 00:51:29,888] [main] testng.multiplier = 1.0 [testng] [2024-03-30 00:51:29,889] [main] testng.in-memory = false [testng] [2024-03-30 00:51:29,890] [main] testng.allow-missing = false [testng] [2024-03-30 00:51:29,890] [main] user.language = en [testng] [2024-03-30 00:51:29,890] [main] user.country = ${user.country} [testng] [2024-03-30 00:51:29,890] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-03-30 00:58:39,708] [main] ---------------------------------------- [testng] [2024-03-30 00:58:39,708] [main] Total files: 7329 [testng] [2024-03-30 00:58:39,709] [main] Scan time: 429.818 s (58 ms/file) [testng] [2024-03-30 00:58:39,709] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-03-30 01:02:06,626] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] 01:02:06,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:02:06,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:02:06,629 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-30_01-02-06.log] [testng] 01:02:06,630 |-INFO in ch.qos.logback.core.sift.SiftProcessor@300d9193 - End of configuration. [testng] [2024-03-30 01:02:06,704] [pool-1-thread-1] Used files list does not include base file [testng] [2024-03-30 01:02:06,709] [pool-1-thread-12] Initializing /data/josh/2101to600e.stk: [testng] 01:02:06,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:02:06,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:02:06,710 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-30_01-02-06.log] [testng] 01:02:06,710 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b1061e3 - End of configuration. [testng] [2024-03-30 01:02:07,230] [pool-1-thread-11] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] 01:02:07,231 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:02:07,231 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:02:07,231 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-30_01-02-07.log] [testng] 01:02:07,232 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5224be65 - End of configuration. [testng] [2024-03-30 01:02:07,317] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] 01:02:07,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:02:07,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:02:07,318 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-30_01-02-07.log] [testng] 01:02:07,319 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74226c2f - End of configuration. [testng] [2024-03-30 01:02:07,379] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] 01:02:07,379 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:02:07,379 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:02:07,380 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-30_01-02-07.log] [testng] 01:02:07,380 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c9a303 - End of configuration. [testng] [2024-03-30 01:02:07,445] [pool-1-thread-9] Used files list does not include base file [testng] [2024-03-30 01:02:07,447] [pool-1-thread-8] Initializing /data/dave/Z Series.stk: [testng] 01:02:07,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:02:07,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:02:07,448 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-30_01-02-07.log] [testng] 01:02:07,448 |-INFO in ch.qos.logback.core.sift.SiftProcessor@315eb1a4 - End of configuration. [testng] [2024-03-30 01:02:07,497] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] 01:02:07,497 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:02:07,497 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:02:07,498 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-30_01-02-07.log] [testng] 01:02:07,498 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f8c2419 - End of configuration. [testng] [2024-03-30 01:02:07,517] [pool-1-thread-6] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] 01:02:07,517 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:02:07,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:02:07,518 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-30_01-02-07.log] [testng] 01:02:07,518 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7394baa - End of configuration. [testng] [2024-03-30 01:02:07,583] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] 01:02:07,583 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:02:07,583 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:02:07,584 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-30_01-02-07.log] [testng] 01:02:07,584 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ea28562 - End of configuration. [testng] [2024-03-30 01:02:07,657] [pool-1-thread-5] Used files list does not include base file [testng] [2024-03-30 01:02:07,664] [pool-1-thread-4] Initializing /data/qa-31304/Well _C6_1.tif: [testng] 01:02:07,665 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:02:07,665 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:02:07,665 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-30_01-02-07.log] [testng] 01:02:07,665 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b3e377e - End of configuration. [testng] [2024-03-30 01:02:07,767] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] 01:02:07,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:02:07,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:02:07,768 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-30_01-02-07.log] [testng] 01:02:07,768 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e6d5413 - End of configuration. [testng] [2024-03-30 01:02:07,836] [pool-1-thread-2] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] 01:02:07,836 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:02:07,836 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:02:07,837 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-30_01-02-07.log] [testng] 01:02:07,837 |-INFO in ch.qos.logback.core.sift.SiftProcessor@224178f4 - End of configuration. [testng] [2024-03-30 01:02:09,067] [pool-1-thread-7] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-03-30 01:02:09,438] [pool-1-thread-8] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-03-30 01:02:09,640] [pool-1-thread-11] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2024-03-30 01:02:09,687] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-03-30 01:02:09,845] [pool-1-thread-3] Initializing /data/ascb/C1 Stack.stk: [testng] [2024-03-30 01:02:10,186] [pool-1-thread-10] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-03-30 01:02:10,227] [pool-1-thread-6] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-03-30 01:02:10,282] [pool-1-thread-4] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-03-30 01:02:10,553] [pool-1-thread-11] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-03-30 01:02:11,137] [pool-1-thread-7] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-03-30 01:02:11,413] [pool-1-thread-4] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2024-03-30 01:02:11,499] [pool-1-thread-5] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2024-03-30 01:02:11,544] [pool-1-thread-9] Initializing /data/samples/zseries.stk: [testng] [2024-03-30 01:02:11,586] [pool-1-thread-1] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-03-30 01:02:11,607] [pool-1-thread-1] Used files list does not include base file [testng] [2024-03-30 01:02:11,609] [pool-1-thread-6] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2024-03-30 01:02:11,767] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2024-03-30 01:02:12,053] [pool-1-thread-11] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-03-30 01:02:12,109] [pool-1-thread-3] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-03-30 01:02:13,274] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-03-30 01:02:13,345] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-03-30 01:02:13,485] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-03-30 01:02:13,568] [pool-1-thread-1] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-03-30 01:02:13,616] [pool-1-thread-9] Initializing /data/steve/Experiment2.stk: [testng] [2024-03-30 01:02:13,693] [pool-1-thread-10] Initializing /data/josh/2101to600f.stk: [testng] [2024-03-30 01:02:16,025] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-03-30 01:02:16,218] [pool-1-thread-1] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-03-30 01:02:16,377] [pool-1-thread-7] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-03-30 01:02:16,559] [pool-1-thread-9] Initializing /data/david/tl4.tif: [testng] [2024-03-30 01:02:17,114] [pool-1-thread-12] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-03-30 01:02:17,242] [pool-1-thread-4] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-03-30 01:02:17,294] [pool-1-thread-8] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-03-30 01:02:17,449] [pool-1-thread-5] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2024-03-30 01:02:17,544] [pool-1-thread-11] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-03-30 01:02:18,356] [pool-1-thread-6] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-03-30 01:02:18,584] [pool-1-thread-12] Initializing /data/samples/zserEight.stk: [testng] [2024-03-30 01:02:18,789] [pool-1-thread-6] Initializing /data/aaron/metamorph.stk: [testng] [2024-03-30 01:02:18,922] [pool-1-thread-12] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-30 01:02:18,999] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-03-30 01:02:19,066] [pool-1-thread-1] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2024-03-30 01:02:22,351] [pool-1-thread-5] Initializing /data/alex/Selected FITC.stk: [testng] [2024-03-30 01:02:22,620] [pool-1-thread-6] Initializing /data/samples/zser24.stk: [testng] [2024-03-30 01:02:22,728] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2024-03-30 01:02:23,058] [pool-1-thread-4] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-03-30 01:02:23,405] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-30 01:02:23,611] [pool-1-thread-8] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] [2024-03-30 01:02:23,784] [pool-1-thread-12] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-03-30 01:02:24,554] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-03-30 01:02:24,763] [pool-1-thread-8] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-03-30 01:02:25,080] [pool-1-thread-9] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-03-30 01:02:25,344] [pool-1-thread-12] Initializing 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[pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-03-30 01:02:28,559] [pool-1-thread-5] Used files list does not include base file [testng] [2024-03-30 01:02:28,666] [pool-1-thread-7] Initializing /data/ascb/RNA dye MT 2.tif: [testng] [2024-03-30 01:02:30,864] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-30 01:02:30,918] [pool-1-thread-5] Initializing /data/qa-16887/m-01.tif: [testng] [2024-03-30 01:02:31,433] [pool-1-thread-12] Initializing /data/josh/2101to400astk.stk: [testng] [2024-03-30 01:02:33,160] [pool-1-thread-7] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-03-30 01:02:33,218] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-03-30 01:02:33,371] [pool-1-thread-10] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2024-03-30 01:02:34,192] 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WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-03-30 01:02:34,651] [pool-1-thread-4] Initializing /data/chris/exp1_w2CSU RED_s3_t003.stk: [testng] [2024-03-30 01:02:34,723] [pool-1-thread-10] Initializing /data/jacek/YFP2trans.tif: [testng] [2024-03-30 01:02:34,789] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2024-03-30 01:02:34,846] [pool-1-thread-3] Used files list does not include base file [testng] [2024-03-30 01:02:34,847] [pool-1-thread-8] Initializing /data/heiko/sample_3x3.stk: [testng] [2024-03-30 01:02:34,912] [pool-1-thread-7] Initializing /data/samples/10xcalib.stk: [testng] [2024-03-30 01:02:35,440] [pool-1-thread-7] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-03-30 01:02:35,524] [pool-1-thread-4] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-03-30 01:02:35,917] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-03-30 01:02:36,420] [pool-1-thread-8] Initializing /data/josh/2101to600b.stk: [testng] [2024-03-30 01:02:37,537] [pool-1-thread-5] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-03-30 01:02:38,280] [pool-1-thread-10] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2024-03-30 01:02:38,472] [pool-1-thread-3] Initializing /data/cumol-test-series/23.001: [testng] [2024-03-30 01:02:38,560] [pool-1-thread-7] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-03-30 01:02:39,247] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-03-30 01:02:39,281] [pool-1-thread-4] Used files list does not include base file [testng] [2024-03-30 01:02:39,300] [pool-1-thread-10] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] [2024-03-30 01:02:39,756] [pool-1-thread-5] Initializing 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01:02:53,585] [pool-1-thread-2] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-03-30 01:02:53,831] [pool-1-thread-7] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-30 01:02:53,982] [pool-1-thread-9] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2024-03-30 01:02:54,039] [pool-1-thread-11] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2024-03-30 01:02:54,266] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-03-30 01:02:54,665] [pool-1-thread-12] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-03-30 01:02:56,008] [pool-1-thread-9] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2024-03-30 01:02:56,393] [pool-1-thread-8] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2024-03-30 01:02:56,571] [pool-1-thread-10] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-03-30 01:02:56,928] [pool-1-thread-5] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-03-30 01:02:57,864] [pool-1-thread-7] Initializing /data/steve/Experiment2.tif: [testng] [2024-03-30 01:02:58,564] [pool-1-thread-10] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-03-30 01:02:58,904] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-03-30 01:02:59,053] [pool-1-thread-2] Initializing /data/jerome/deconv.STK: [testng] [2024-03-30 01:02:59,181] [pool-1-thread-8] Initializing /data/qa-16915/m-04.tif: [testng] [2024-03-30 01:03:00,323] [pool-1-thread-7] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-03-30 01:03:00,705] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full 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[pool-1-thread-12] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-30 01:03:05,429] [pool-1-thread-8] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-03-30 01:03:06,120] [pool-1-thread-10] Initializing /data/thomas/test.tif: [testng] [2024-03-30 01:03:06,553] [pool-1-thread-7] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-03-30 01:03:06,735] [pool-1-thread-5] Initializing /data/qa-16915/m-02.tif: [testng] [2024-03-30 01:03:07,689] [pool-1-thread-10] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-03-30 01:03:08,033] [pool-1-thread-7] Initializing /data/qa-16915/m-01-488.ome.tif: [testng] [2024-03-30 01:03:08,371] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2024-03-30 01:03:08,491] [pool-1-thread-12] Used files list does not include base file [testng] [2024-03-30 01:03:08,820] [pool-1-thread-2] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] [2024-03-30 01:03:11,565] [pool-1-thread-4] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] [2024-03-30 01:03:11,952] [pool-1-thread-9] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-03-30 01:03:12,864] [pool-1-thread-11] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-03-30 01:03:13,029] [pool-1-thread-7] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-03-30 01:03:14,066] [pool-1-thread-9] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-03-30 01:03:14,430] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2024-03-30 01:03:14,976] [pool-1-thread-8] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-03-30 01:03:16,836] [pool-1-thread-12] Initializing 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01:03:21,102] [pool-1-thread-9] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-03-30 01:03:21,286] [pool-1-thread-12] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] [2024-03-30 01:03:22,586] [pool-1-thread-9] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-03-30 01:03:22,677] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-03-30 01:03:22,880] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif: [testng] [2024-03-30 01:03:23,491] [pool-1-thread-9] Initializing /data/grant/XYZ_Image.STK: [testng] [2024-03-30 01:03:23,805] [pool-1-thread-11] Initializing /data/thomas/t_test2001.tif: [testng] [2024-03-30 01:03:24,177] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-03-30 01:03:24,300] [pool-1-thread-12] Used files list does not include base file [testng] [2024-03-30 01:03:24,486] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-03-30 01:03:24,520] [pool-1-thread-7] Used files list does not include base file [testng] [2024-03-30 01:03:24,762] [pool-1-thread-11] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-03-30 01:03:24,895] [pool-1-thread-4] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] [2024-03-30 01:03:25,374] [pool-1-thread-7] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-03-30 01:03:25,589] [pool-1-thread-9] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-03-30 01:03:26,365] [pool-1-thread-11] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-03-30 01:03:27,006] [pool-1-thread-7] Initializing /data/josh/2101to400bstk.stk: [testng] [2024-03-30 01:03:35,215] [pool-1-thread-9] Initializing /data/ascb/mt mklp1.tif: [testng] [2024-03-30 01:03:35,305] [pool-1-thread-2] Initializing /data/qa-16915/m-04-488.tif: [testng] [2024-03-30 01:03:36,458] [pool-1-thread-12] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2024-03-30 01:03:36,667] [pool-1-thread-5] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-03-30 01:03:37,418] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-03-30 01:03:37,521] [pool-1-thread-11] Used files list does not include base file [testng] [2024-03-30 01:03:38,063] [pool-1-thread-9] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-03-30 01:03:39,383] [pool-1-thread-12] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2024-03-30 01:03:39,570] [pool-1-thread-9] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-03-30 01:03:39,752] [pool-1-thread-2] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-03-30 01:03:41,156] [pool-1-thread-12] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-03-30 01:03:41,787] [pool-1-thread-9] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-03-30 01:03:42,070] [pool-1-thread-2] Initializing /data/qa-30870/220209_posit5.tif: [testng] [2024-03-30 01:03:42,666] [pool-1-thread-11] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-03-30 01:03:43,678] [pool-1-thread-9] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-03-30 01:03:44,188] [pool-1-thread-2] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-03-30 01:03:44,602] [pool-1-thread-9] Initializing /data/qa-16915/m-01.tif: [testng] [2024-03-30 01:03:45,924] [pool-1-thread-10] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] [2024-03-30 01:03:46,004] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-03-30 01:03:46,093] [pool-1-thread-11] Used files list does not include base file [testng] [2024-03-30 01:03:46,385] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-03-30 01:03:47,115] [pool-1-thread-2] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-03-30 01:03:47,297] [pool-1-thread-10] Initializing /data/jae/RGB_s34.tif: [testng] [2024-03-30 01:03:49,115] [pool-1-thread-9] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-03-30 01:03:49,388] [pool-1-thread-2] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-03-30 01:03:50,356] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-03-30 01:03:50,420] [pool-1-thread-12] Used files list does not include base file [testng] [2024-03-30 01:03:50,433] [pool-1-thread-10] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-03-30 01:03:50,889] [pool-1-thread-9] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2024-03-30 01:03:51,171] [pool-1-thread-11] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-03-30 01:03:51,678] [pool-1-thread-9] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-03-30 01:03:51,777] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-03-30 01:03:51,914] [pool-1-thread-10] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-03-30 01:03:52,464] [pool-1-thread-11] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-03-30 01:03:54,044] [pool-1-thread-4] Initializing /data/ascb/mt aim.tif: [testng] [2024-03-30 01:03:54,242] [pool-1-thread-10] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-03-30 01:03:54,666] [pool-1-thread-12] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-03-30 01:03:54,885] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-03-30 01:03:55,098] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-30 01:03:55,739] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-03-30 01:03:55,816] [pool-1-thread-4] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-03-30 01:03:57,794] [pool-1-thread-6] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-03-30 01:03:58,148] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-03-30 01:03:58,233] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-03-30 01:03:58,860] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-03-30 01:03:58,905] [pool-1-thread-2] Used files list does not include base file [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 21 minutes 55 seconds Finished: SUCCESS