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Started by upstream project "BIOFORMATS-test-repo" build number 129 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins11150722511343417553.sh + '[' biorad-gel = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_20279_merge_ci -v /uod/idr/repos/curated/biorad-gel:/data -v /uod/idr-scratch/merge-ci/curated/biorad-gel:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 14:47:48,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 14:47:48,681 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 14:47:48,729 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 14:47:48,729 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 14:47:48,745 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 14:47:48,745 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 14:47:48,746 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 14:47:48,747 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 14:47:48,747 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 14:47:48,749 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 14:47:48,750 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 440 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-22 14:47:48,770] [main] java.version = 1.8.0_342 [testng] 14:47:48,778 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 14:47:48,778 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:47:48,864 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-22_14-47-48.log] [testng] 14:47:48,869 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-07-22 14:47:48,873] [main] testng.directory = /data [testng] [2024-07-22 14:47:48,874] [main] testng.configDirectory = /config [testng] [2024-07-22 14:47:48,907] [main] testng.multiplier = 1.0 [testng] [2024-07-22 14:47:48,908] [main] testng.in-memory = false [testng] [2024-07-22 14:47:48,908] [main] testng.allow-missing = false [testng] [2024-07-22 14:47:48,908] [main] user.language = fr [testng] [2024-07-22 14:47:48,908] [main] user.country = FR [testng] [2024-07-22 14:47:48,909] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-07-22 14:47:50,343] [main] ---------------------------------------- [testng] [2024-07-22 14:47:50,343] [main] Total files: 32 [testng] [2024-07-22 14:47:50,344] [main] Scan time: 1.434 s (44 ms/file) [testng] [2024-07-22 14:47:50,344] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 32 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-22 14:47:55,270] [pool-1-thread-1] Initializing /data/sylvain/2009-10-26 14hr 59min.tif: [testng] 14:47:55,270 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 14:47:55,270 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:47:55,271 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-22_14-47-55.log] [testng] 14:47:55,272 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16bbd098 - End of configuration. [testng] [2024-07-22 14:47:55,440] [pool-1-thread-12] Initializing /data/sylvain/2009-10-23 12hr 18min.tif: [testng] 14:47:55,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 14:47:55,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:47:55,441 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-22_14-47-55.log] [testng] 14:47:55,442 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68160474 - End of configuration. [testng] [2024-07-22 14:47:55,518] [pool-1-thread-11] Initializing /data/qa-29459/bad.jpg: [testng] 14:47:55,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 14:47:55,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:47:55,519 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-22_14-47-55.log] [testng] 14:47:55,520 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b984d60 - End of configuration. [testng] [2024-07-22 14:47:55,538] [pool-1-thread-10] Initializing /data/keith/PF020328saur v3.1sc: [testng] 14:47:55,539 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 14:47:55,539 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:47:55,540 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-22_14-47-55.log] [testng] 14:47:55,540 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3725ffca - End of configuration. [testng] [2024-07-22 14:47:55,556] [pool-1-thread-9] Initializing /data/samples/Criterion.1sc: [testng] 14:47:55,556 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 14:47:55,556 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:47:55,557 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-22_14-47-55.log] [testng] 14:47:55,558 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52ac78f8 - End of configuration. [testng] [2024-07-22 14:47:55,596] [pool-1-thread-8] Initializing /data/geert/bad example1.1sc.jpg: [testng] 14:47:55,596 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 14:47:55,596 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:47:55,597 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-22_14-47-55.log] [testng] 14:47:55,597 |-INFO in ch.qos.logback.core.sift.SiftProcessor@560a232e - End of configuration. [testng] [2024-07-22 14:47:55,634] [pool-1-thread-7] Initializing /data/geert/bad example1.1sc: [testng] 14:47:55,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 14:47:55,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:47:55,635 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-22_14-47-55.log] [testng] 14:47:55,636 |-INFO in ch.qos.logback.core.sift.SiftProcessor@cdcdcfa - End of configuration. [testng] [2024-07-22 14:47:55,679] [pool-1-thread-6] Initializing /data/qa-29469/bad2.1sc: [testng] 14:47:55,679 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 14:47:55,680 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:47:55,681 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-22_14-47-55.log] [testng] 14:47:55,681 |-INFO in ch.qos.logback.core.sift.SiftProcessor@268ba223 - End of configuration. [testng] [2024-07-22 14:47:55,746] [pool-1-thread-5] Initializing /data/david/Opened in imageJ.tiff: [testng] 14:47:55,746 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 14:47:55,746 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:47:55,747 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-22_14-47-55.log] [testng] 14:47:55,748 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6bc70a68 - End of configuration. [testng] [2024-07-22 14:47:55,803] [pool-1-thread-4] Initializing /data/sylvain/2009-10-23 12hr 19min: [testng] 14:47:55,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 14:47:55,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:47:55,805 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-22_14-47-55.log] [testng] 14:47:55,805 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1fc98436 - End of configuration. [testng] [2024-07-22 14:47:55,836] [pool-1-thread-3] Initializing /data/david/Original Biorad Gel format file.1sc: [testng] 14:47:55,837 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 14:47:55,837 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:47:55,837 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-22_14-47-55.log] [testng] 14:47:55,838 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36b30169 - End of configuration. [testng] [2024-07-22 14:47:55,863] [pool-1-thread-2] Initializing /data/adrian/test_img.1sc: [testng] 14:47:55,863 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 14:47:55,863 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:47:55,864 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-22_14-47-55.log] [testng] 14:47:55,865 |-INFO in ch.qos.logback.core.sift.SiftProcessor@337e3994 - End of configuration. [testng] [2024-07-22 14:47:58,289] [pool-1-thread-11] Initializing /data/sylvain/2009-10-23 12hr 19min.tif: [testng] [2024-07-22 14:47:58,361] [pool-1-thread-10] Initializing /data/samples/imagesEight.1sc: [testng] [2024-07-22 14:47:58,385] [pool-1-thread-3] Initializing /data/qa-29459/bad.1sc: [testng] [2024-07-22 14:47:58,445] [pool-1-thread-5] Initializing /data/geert/bad example1.jpg: [testng] [2024-07-22 14:47:58,479] [pool-1-thread-8] Initializing /data/sylvain/2009-10-26 14hr 57min.tif: [testng] [2024-07-22 14:47:58,538] [pool-1-thread-4] Initializing /data/sylvain/2009-10-26 14hr 59min: [testng] [2024-07-22 14:47:58,838] [pool-1-thread-2] Initializing /data/sylvain/2009-10-23 12hr 18min: [testng] [2024-07-22 14:47:58,965] [pool-1-thread-9] Initializing /data/keith/pg020410saur3.1sc: [testng] [2024-07-22 14:47:59,087] [pool-1-thread-6] Initializing /data/qa-29469/bad3.1sc: [testng] [2024-07-22 14:47:59,227] [pool-1-thread-7] Initializing /data/geert/good example1.1sc: [testng] [2024-07-22 14:47:59,311] [pool-1-thread-1] Initializing /data/qa-16880/c-src v7.1sc: [testng] [2024-07-22 14:47:59,468] [pool-1-thread-10] Initializing /data/sylvain/2009-10-26 14hr 56min.tif: [testng] [2024-07-22 14:47:59,659] [pool-1-thread-9] Initializing /data/keith/test.1sc: [testng] [2024-07-22 14:47:59,781] [pool-1-thread-12] Initializing /data/geert/good example1.1sc.jpg: [testng] [2024-07-22 14:47:59,972] [pool-1-thread-5] Initializing /data/keith/test2.1sc: [testng] [2024-07-22 14:48:00,209] [pool-1-thread-3] Initializing /data/sylvain/2009-10-26 14hr 57min: [testng] [2024-07-22 14:48:00,289] [pool-1-thread-9] Initializing /data/keith/PF020426MRSA v2.1sc: [testng] [2024-07-22 14:48:00,333] [pool-1-thread-4] Initializing /data/qa-29469/good.1sc: [testng] [2024-07-22 14:48:00,488] [pool-1-thread-2] Initializing /data/david/Converted in Quantity One (Biorad).tiff: [testng] [2024-07-22 14:48:00,554] [pool-1-thread-5] Initializing /data/sylvain/2009-10-26 14hr 56min: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1696, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 16 seconds Finished: SUCCESS