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Started by upstream project "BIOFORMATS-test-repo" build number 130 originally caused by: Started by upstream project "Trigger" build number 147 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins16841767519817413416.sh + '[' lim = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_20324_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 11:14:02,501 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 11:14:02,503 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 11:14:02,503 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:14:02,504 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:14:02,505 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 11:14:02,506 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 11:14:02,506 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 11:14:02,506 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:14:02,507 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:14:02,508 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 11:14:02,508 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 11:14:02,508 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 11:14:02,724 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 11:14:02,725 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 11:14:02,750 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 11:14:02,751 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 11:14:02,759 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 11:14:02,759 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 11:14:02,760 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 11:14:02,760 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 11:14:02,760 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 11:14:02,762 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 11:14:02,762 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 255 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-23 11:14:02,774] [main] java.version = 11.0.16 [testng] 11:14:02,779 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 11:14:02,779 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:14:02,847 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-23_11-14-02.log] [testng] 11:14:02,849 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-07-23 11:14:02,853] [main] testng.directory = /data [testng] [2024-07-23 11:14:02,853] [main] testng.configDirectory = /config [testng] [2024-07-23 11:14:02,870] [main] testng.multiplier = 1.0 [testng] [2024-07-23 11:14:02,872] [main] testng.in-memory = false [testng] [2024-07-23 11:14:02,872] [main] testng.allow-missing = false [testng] [2024-07-23 11:14:02,872] [main] user.language = en [testng] [2024-07-23 11:14:02,872] [main] user.country = ${user.country} [testng] [2024-07-23 11:14:02,873] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-07-23 11:14:03,316] [main] ---------------------------------------- [testng] [2024-07-23 11:14:03,317] [main] Total files: 21 [testng] [2024-07-23 11:14:03,317] [main] Scan time: 0.443 s (21 ms/file) [testng] [2024-07-23 11:14:03,317] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 20 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-23 11:14:04,625] [pool-1-thread-1] Initializing /data/venu/Kontrolle0010.lim: [testng] 11:14:04,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 11:14:04,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:14:04,628 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-23_11-14-04.log] [testng] 11:14:04,628 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77a1889e - End of configuration. [testng] [2024-07-23 11:14:04,700] [pool-1-thread-12] Initializing /data/venu/Kontrolle0018.lim: [testng] 11:14:04,701 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 11:14:04,701 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:14:04,702 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-23_11-14-04.log] [testng] 11:14:04,703 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c16d5a2 - End of configuration. [testng] [2024-07-23 11:14:04,725] [pool-1-thread-11] Initializing /data/venu/Kontrolle0008.lim: [testng] 11:14:04,725 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 11:14:04,725 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:14:04,726 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-23_11-14-04.log] [testng] 11:14:04,727 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57c2aff5 - End of configuration. [testng] [2024-07-23 11:14:04,747] [pool-1-thread-10] Initializing /data/venu/Kontrolle0021.lim: [testng] 11:14:04,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 11:14:04,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:14:04,748 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-23_11-14-04.log] [testng] 11:14:04,749 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5465df6b - End of configuration. [testng] [2024-07-23 11:14:04,768] [pool-1-thread-9] Initializing /data/venu/Kontrolle0007.lim: [testng] 11:14:04,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 11:14:04,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:14:04,769 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-23_11-14-04.log] [testng] 11:14:04,770 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7696aaf3 - End of configuration. [testng] [2024-07-23 11:14:04,788] [pool-1-thread-8] Initializing /data/venu/Kontrolle0005.lim: [testng] 11:14:04,788 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 11:14:04,788 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:14:04,789 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-23_11-14-04.log] [testng] 11:14:04,790 |-INFO in ch.qos.logback.core.sift.SiftProcessor@689d4b28 - End of configuration. [testng] [2024-07-23 11:14:04,809] [pool-1-thread-7] Initializing /data/venu/Kontrolle0016.lim: [testng] 11:14:04,809 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 11:14:04,809 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:14:04,810 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-23_11-14-04.log] [testng] 11:14:04,811 |-INFO in ch.qos.logback.core.sift.SiftProcessor@635e287d - End of configuration. [testng] [2024-07-23 11:14:04,824] [pool-1-thread-6] Initializing /data/venu/Kontrolle0004.lim: [testng] 11:14:04,824 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 11:14:04,824 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:14:04,825 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-23_11-14-04.log] [testng] 11:14:04,825 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ee52cad - End of configuration. [testng] [2024-07-23 11:14:04,842] [pool-1-thread-5] Initializing /data/venu/Kontrolle0002.lim: [testng] 11:14:04,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 11:14:04,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:14:04,843 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-23_11-14-04.log] [testng] 11:14:04,843 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4473bc6e - End of configuration. [testng] [2024-07-23 11:14:04,860] [pool-1-thread-4] Initializing /data/venu/Kontrolle0015.lim: [testng] 11:14:04,861 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 11:14:04,861 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:14:04,861 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-23_11-14-04.log] [testng] 11:14:04,862 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5457b557 - End of configuration. [testng] [2024-07-23 11:14:04,878] [pool-1-thread-3] Initializing /data/venu/Kontrolle0014.lim: [testng] 11:14:04,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 11:14:04,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:14:04,879 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-23_11-14-04.log] [testng] 11:14:04,880 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66aebe46 - End of configuration. [testng] [2024-07-23 11:14:04,898] [pool-1-thread-2] Initializing /data/venu/Kontrolle0020.lim: [testng] 11:14:04,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 11:14:04,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:14:04,900 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-23_11-14-04.log] [testng] 11:14:04,900 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2fd4fd9e - End of configuration. [testng] [2024-07-23 11:14:07,188] [pool-1-thread-10] Initializing /data/venu/Kontrolle0012.lim: [testng] [2024-07-23 11:14:07,204] [pool-1-thread-11] Initializing /data/venu/Kontrolle0019.lim: [testng] [2024-07-23 11:14:07,218] [pool-1-thread-12] Initializing /data/venu/Kontrolle0001.lim: [testng] [2024-07-23 11:14:07,234] [pool-1-thread-2] Initializing /data/venu/Kontrolle0013.lim: [testng] [2024-07-23 11:14:07,250] [pool-1-thread-7] Initializing /data/venu/Kontrolle0009.lim: [testng] [2024-07-23 11:14:07,265] [pool-1-thread-1] Initializing /data/venu/Kontrolle0017.lim: [testng] [2024-07-23 11:14:07,281] [pool-1-thread-6] Initializing /data/venu/Kontrolle0003.lim: [testng] [2024-07-23 11:14:07,298] [pool-1-thread-3] Initializing /data/venu/Kontrolle0011.lim: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1060, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 9 seconds Finished: SUCCESS