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Started by upstream project "BIOFORMATS-test-repo" build number 131 originally caused by: Started by upstream project "Trigger" build number 148 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins10208550046211836992.sh + '[' olympus-oir = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_20484_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:20:48,451 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:20:48,452 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service. [testng] 01:20:48,452 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:20:48,454 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:20:48,454 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:20:48,455 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:20:48,455 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:20:48,455 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:20:48,455 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:20:48,456 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:20:48,456 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:20:48,457 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:20:48,653 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:20:48,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:20:48,681 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:20:48,681 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:20:48,689 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:20:48,689 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:20:48,689 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:20:48,690 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:20:48,690 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration. [testng] 01:20:48,694 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point [testng] 01:20:48,694 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 239 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-24 01:20:48,709] [main] java.version = 17.0.2 [testng] 01:20:48,714 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:20:48,714 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:48,766 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-24_01-20-48.log] [testng] 01:20:48,768 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-07-24 01:20:48,771] [main] testng.directory = /data [testng] [2024-07-24 01:20:48,772] [main] testng.configDirectory = /config [testng] [2024-07-24 01:20:48,785] [main] testng.multiplier = 1.0 [testng] [2024-07-24 01:20:48,786] [main] testng.in-memory = false [testng] [2024-07-24 01:20:48,787] [main] testng.allow-missing = false [testng] [2024-07-24 01:20:48,787] [main] user.language = en [testng] [2024-07-24 01:20:48,787] [main] user.country = ${user.country} [testng] [2024-07-24 01:20:48,787] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-07-24 01:21:05,722] [main] ---------------------------------------- [testng] [2024-07-24 01:21:05,723] [main] Total files: 283 [testng] [2024-07-24 01:21:05,723] [main] Scan time: 16.935 s (59 ms/file) [testng] [2024-07-24 01:21:05,723] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 186 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-24 01:29:02,568] [pool-1-thread-1] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif: [testng] 01:29:02,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:29:02,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:02,570 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-24_01-29-02.log] [testng] 01:29:02,571 |-INFO in ch.qos.logback.core.sift.SiftProcessor@319bfb94 - End of configuration. [testng] [2024-07-24 01:29:02,636] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif: [testng] 01:29:02,636 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:29:02,636 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:02,637 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-24_01-29-02.log] [testng] 01:29:02,637 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4cdaec6d - End of configuration. [testng] [2024-07-24 01:29:02,749] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif: [testng] 01:29:02,750 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:29:02,750 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:02,751 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-24_01-29-02.log] [testng] 01:29:02,751 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62c78043 - End of configuration. [testng] [2024-07-24 01:29:02,830] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir: [testng] 01:29:02,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:29:02,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:02,831 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-24_01-29-02.log] [testng] 01:29:02,832 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ced4a99 - End of configuration. [testng] [2024-07-24 01:29:02,919] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif: [testng] 01:29:02,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:29:02,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:02,920 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-24_01-29-02.log] [testng] 01:29:02,920 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3eea36a3 - End of configuration. [testng] [2024-07-24 01:29:02,987] [pool-1-thread-8] Initializing /data/qa-17270/image1.oir: [testng] 01:29:02,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:29:02,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:02,989 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-24_01-29-02.log] [testng] 01:29:02,989 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f807767 - End of configuration. [testng] [2024-07-24 01:29:03,092] [pool-1-thread-7] Initializing /data/qa-17919/f10187.oir: [testng] 01:29:03,093 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:29:03,093 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:03,094 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-24_01-29-03.log] [testng] 01:29:03,094 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3cff0c00 - End of configuration. [testng] [2024-07-24 01:29:19,166] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif: [testng] 01:29:19,166 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:29:19,166 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:19,167 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-24_01-29-19.log] [testng] 01:29:19,168 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70b333e5 - End of configuration. [testng] [2024-07-24 01:29:19,217] [pool-1-thread-5] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets: [testng] 01:29:19,217 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:29:19,217 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:19,218 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-24_01-29-19.log] [testng] 01:29:19,218 |-INFO in ch.qos.logback.core.sift.SiftProcessor@89c4689 - End of configuration. [testng] [2024-07-24 01:29:19,240] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif: [testng] 01:29:19,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:29:19,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:19,241 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-24_01-29-19.log] [testng] 01:29:19,242 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b0acaa7 - End of configuration. [testng] [2024-07-24 01:29:19,342] [pool-1-thread-3] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif: [testng] 01:29:19,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:29:19,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:19,343 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-24_01-29-19.log] [testng] 01:29:19,343 |-INFO in ch.qos.logback.core.sift.SiftProcessor@295f4c7e - End of configuration. [testng] [2024-07-24 01:29:19,394] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif: [testng] 01:29:19,395 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:29:19,395 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:19,395 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-24_01-29-19.log] [testng] 01:29:19,396 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7366bbfe - End of configuration. [testng] [2024-07-24 01:29:20,453] [pool-1-thread-5] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 01:29:21,923] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir: [testng] [2024-07-24 01:29:22,118] [pool-1-thread-10] Initializing /data/olympus/40X_4CH_XY.vsi: [testng] [2024-07-24 01:29:22,151] [pool-1-thread-11] Initializing /data/qa-17331/60x zstack RS.ome.tif: [testng] [2024-07-24 01:29:22,302] [pool-1-thread-3] Initializing /data/qa-17270/Clipboard-alexa488.tif: [testng] [2024-07-24 01:29:22,390] [pool-1-thread-4] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif: [testng] [2024-07-24 01:29:22,477] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif: [testng] [2024-07-24 01:29:22,516] [pool-1-thread-2] Initializing /data/qa-16881/P10D1 20150729_0019.oir: [testng] [2024-07-24 01:29:22,703] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir: [testng] [2024-07-24 01:29:23,203] [pool-1-thread-1] Initializing /data/qa-17270/stack1.oir: [testng] [2024-07-24 01:29:24,643] [pool-1-thread-12] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir: [testng] [2024-07-24 01:29:24,816] [pool-1-thread-5] Initializing /data/olympus/XYZt.vsi: [testng] [2024-07-24 01:29:25,905] [pool-1-thread-5] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif: [testng] [2024-07-24 01:29:25,976] [pool-1-thread-9] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif: [testng] [2024-07-24 01:29:26,081] [pool-1-thread-3] Initializing /data/olympus/40X_4CH_XY.oir: [testng] [2024-07-24 01:29:26,251] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif: [testng] [2024-07-24 01:29:26,492] [pool-1-thread-11] Initializing /data/qa-16881/P10D1 20150729.ome.tif: [testng] [2024-07-24 01:29:26,582] [pool-1-thread-10] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir: [testng] [2024-07-24 01:30:11,701] [pool-1-thread-2] Initializing /data/public/etienne/Clipboard-venus stack.tif: [testng] [2024-07-24 01:30:11,741] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif: [testng] [2024-07-24 01:30:12,508] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif: [testng] [2024-07-24 01:30:12,567] [pool-1-thread-5] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir: [testng] [2024-07-24 01:30:13,016] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif: [testng] [2024-07-24 01:30:13,096] [pool-1-thread-11] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif: [testng] [2024-07-24 01:30:13,269] [pool-1-thread-2] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif: [testng] [2024-07-24 01:30:13,321] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif: [testng] [2024-07-24 01:30:13,693] [pool-1-thread-6] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png: [testng] [2024-07-24 01:30:13,927] [pool-1-thread-6] Initializing /data/cudmore/20190401__0005.oir: [testng] [2024-07-24 01:30:18,149] [pool-1-thread-4] Initializing /data/public/etienne/venus stack.oir: [testng] [2024-07-24 01:30:18,764] [pool-1-thread-9] Initializing /data/qa-21508/Stitch_A01_G008.oir: [testng] [2024-07-24 01:30:18,823] [pool-1-thread-3] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif: [testng] [2024-07-24 01:30:18,968] [pool-1-thread-2] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir: [testng] [2024-07-24 01:30:19,207] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/Clipboard.tif: [testng] [2024-07-24 01:30:19,359] [pool-1-thread-11] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir: [testng] [2024-07-24 01:30:20,726] [pool-1-thread-8] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir: [testng] [2024-07-24 01:30:21,522] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif: [testng] [2024-07-24 01:30:21,583] [pool-1-thread-2] Initializing /data/qa-17270/alexa488.oir: [testng] [2024-07-24 01:30:21,875] [pool-1-thread-4] Initializing /data/qa-17331/60x zstack RS.oir: [testng] [2024-07-24 01:30:22,516] [pool-1-thread-8] Initializing /data/qa-17335/OSR-Z.oir: [testng] [2024-07-24 01:30:23,028] [pool-1-thread-11] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir: [testng] [2024-07-24 01:30:23,506] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir: [testng] [2024-07-24 01:30:23,876] [pool-1-thread-4] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir: [testng] [2024-07-24 01:30:24,038] [pool-1-thread-8] Initializing /data/qa-17335/stimulation_0001_LSM.oir: [testng] [2024-07-24 01:30:24,281] [pool-1-thread-3] Initializing /data/qa-17270/image1.ome.tif: [testng] [2024-07-24 01:30:24,341] [pool-1-thread-1] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif: [testng] [2024-07-24 01:30:24,608] [pool-1-thread-5] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif: [testng] [2024-07-24 01:30:25,613] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif: [testng] [2024-07-24 01:30:25,710] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir: [testng] [2024-07-24 01:30:25,794] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif: [testng] [2024-07-24 01:30:25,910] [pool-1-thread-1] Initializing /data/qa-17270/stack1.ome.tif: [testng] [2024-07-24 01:30:26,034] [pool-1-thread-2] Initializing /data/qa-17335/Clipboard-OSR-Z.tif: [testng] [2024-07-24 01:30:26,099] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir: [testng] [2024-07-24 01:30:26,209] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif: [testng] [2024-07-24 01:30:26,860] [pool-1-thread-8] Initializing /data/qa-16881/P10D1 20150729_0024.oir: [testng] [2024-07-24 01:30:27,046] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir: [testng] [2024-07-24 01:30:27,563] [pool-1-thread-11] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir: [testng] [2024-07-24 01:30:27,826] [pool-1-thread-4] Initializing /data/qa-17917/f10010.oir: [testng] [2024-07-24 01:30:53,594] [pool-1-thread-5] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif: [testng] [2024-07-24 01:30:53,669] [pool-1-thread-2] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir: [testng] [2024-07-24 01:30:53,819] [pool-1-thread-12] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir: [testng] [2024-07-24 01:30:54,066] [pool-1-thread-1] Initializing /data/qa-17270/Clipboard-stack1.tif: [testng] [2024-07-24 01:30:54,501] [pool-1-thread-3] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir: [testng] [2024-07-24 01:30:55,831] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir: [testng] [2024-07-24 01:30:56,019] [pool-1-thread-11] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif: [testng] [2024-07-24 01:30:56,238] [pool-1-thread-5] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif: [testng] [2024-07-24 01:30:56,318] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif: [testng] [2024-07-24 01:30:56,445] [pool-1-thread-2] Initializing /data/olympus/Stitched_XYZ.oir: [testng] [2024-07-24 01:30:56,665] [pool-1-thread-1] Initializing /data/olympus/Stitched_XYZ.ome.tif: [testng] [2024-07-24 01:30:57,410] [pool-1-thread-8] Initializing /data/qa-16871/XY_0003.oir: [testng] [2024-07-24 01:30:57,730] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir: [testng] [2024-07-24 01:30:57,794] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi: [testng] [2024-07-24 01:30:57,889] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi: [testng] [2024-07-24 01:30:58,227] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif: [testng] [2024-07-24 01:30:58,273] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif: [testng] [2024-07-24 01:30:58,543] [pool-1-thread-9] Initializing /data/qa-16881/P10-50 D2.oir: [testng] [2024-07-24 01:30:58,699] [pool-1-thread-12] Initializing /data/qa-17409/Stitch_A01_G001.oir: [testng] [2024-07-24 01:30:59,514] [pool-1-thread-5] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif: [testng] [2024-07-24 01:30:59,718] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif: [testng] [2024-07-24 01:30:59,867] [pool-1-thread-2] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif: [testng] [2024-07-24 01:31:00,086] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir: [testng] [2024-07-24 01:31:00,357] [pool-1-thread-9] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif: [testng] [2024-07-24 01:31:00,481] [pool-1-thread-1] Initializing /data/qa-17293/Clipboard.tif: [testng] [2024-07-24 01:31:00,909] [pool-1-thread-2] Initializing /data/qa-17335/1.oir: [testng] [2024-07-24 01:31:01,086] [pool-1-thread-11] Initializing /data/olympus/XYZt.ome.tif: [testng] [2024-07-24 01:31:01,248] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif: [testng] [2024-07-24 01:31:01,358] [pool-1-thread-8] Initializing /data/qa-17293/2-z-t_0001_LSM.oir: [testng] [2024-07-24 01:31:01,728] [pool-1-thread-9] Initializing /data/olympus/XYZt.oir: [testng] [2024-07-24 01:31:03,113] [pool-1-thread-2] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif: [testng] [2024-07-24 01:31:03,307] [pool-1-thread-1] Initializing /data/qa-16871/XY_0003.ome.tif: [testng] [2024-07-24 01:31:03,854] [pool-1-thread-8] Initializing /data/public/etienne/venus stack.ome.tif: [testng] [2024-07-24 01:31:03,941] [pool-1-thread-5] Initializing /data/qa-17270/Clipboard-image1.tif: [testng] [2024-07-24 01:31:04,509] [pool-1-thread-1] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir: [testng] [2024-07-24 01:31:04,718] [pool-1-thread-2] Initializing /data/qa-17922/example_multipart.oir: [testng] [2024-07-24 01:31:23,606] [pool-1-thread-3] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir: [testng] [2024-07-24 01:31:27,417] [pool-1-thread-11] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets: [testng] [2024-07-24 01:31:27,590] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif: [testng] [2024-07-24 01:31:27,881] [pool-1-thread-5] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif: [testng] [2024-07-24 01:31:27,937] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir: [testng] [2024-07-24 01:31:28,036] [pool-1-thread-11] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 01:31:28,516] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif: [testng] [2024-07-24 01:31:28,957] [pool-1-thread-8] Initializing /data/public/etienne/amy slice z stack_0001.oir: [testng] [2024-07-24 01:31:29,338] [pool-1-thread-1] Initializing /data/qa-16881/P10-50 D2_0006.oir: [testng] [2024-07-24 01:31:29,549] [pool-1-thread-5] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif: [testng] [2024-07-24 01:31:29,993] [pool-1-thread-11] Initializing /data/olympus/calcium sparks_XYt.oir: [testng] [2024-07-24 01:31:30,423] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif: [testng] [2024-07-24 01:31:30,948] [pool-1-thread-8] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir: [testng] [2024-07-24 01:31:31,314] [pool-1-thread-1] Initializing /data/qa-17331/Clipboard.tif: [testng] [2024-07-24 01:31:31,363] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif: [testng] [2024-07-24 01:31:31,699] [pool-1-thread-12] Initializing /data/olympus/spectral_scan_XYL.oir: [testng] [2024-07-24 01:31:32,616] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif: [testng] [2024-07-24 01:31:32,788] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir: [testng] [2024-07-24 01:31:33,375] [pool-1-thread-9] Initializing /data/olympus/Clipboard-XYZt.tif: [testng] [2024-07-24 01:31:33,432] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif: [testng] [2024-07-24 01:31:34,260] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif: [testng] [2024-07-24 01:31:34,460] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir: [testng] [2024-07-24 01:31:34,876] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif: [testng] [2024-07-24 01:31:34,926] [pool-1-thread-9] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi: [testng] [2024-07-24 01:31:35,551] [pool-1-thread-12] Initializing /data/qa-17335/OSR-Z.ome.tif: [testng] [2024-07-24 01:31:35,775] [pool-1-thread-11] Initializing /data/olympus/spectral_scan_XYL.ome.tif: [testng] [2024-07-24 01:31:36,113] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif: [testng] [2024-07-24 01:31:36,431] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif: [testng] [2024-07-24 01:31:36,725] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif: [testng] [2024-07-24 01:31:36,916] [pool-1-thread-12] Initializing /data/olympus/2017-04-20/Clipboard.tif: [testng] [2024-07-24 01:31:37,114] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir: [testng] [2024-07-24 01:31:37,476] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif: [testng] [2024-07-24 01:31:37,648] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif: [testng] [2024-07-24 01:31:37,796] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif: [testng] [2024-07-24 01:31:38,370] [pool-1-thread-9] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info: [testng] [2024-07-24 01:31:38,569] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir: [testng] [2024-07-24 01:31:38,797] [pool-1-thread-11] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir: [testng] [2024-07-24 01:31:38,889] [pool-1-thread-5] Initializing /data/qa-16881/P10D1 20150729.oir: [testng] [2024-07-24 01:31:39,309] [pool-1-thread-6] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir: [testng] [2024-07-24 01:31:39,584] [pool-1-thread-8] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info: [testng] [2024-07-24 01:31:42,437] [pool-1-thread-1] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif: [testng] [2024-07-24 01:31:42,524] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif: [testng] [2024-07-24 01:31:42,627] [pool-1-thread-12] Initializing /data/qa-17335/1.ome.tif: [testng] [2024-07-24 01:31:42,898] [pool-1-thread-9] Initializing /data/olympus/calcium sparks.jpg: [testng] [2024-07-24 01:31:43,150] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif: [testng] [2024-07-24 01:31:43,903] [pool-1-thread-11] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif: [testng] [2024-07-24 01:31:44,003] [pool-1-thread-12] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir: [testng] [2024-07-24 01:31:44,446] [pool-1-thread-1] Initializing /data/public/etienne/coupe shg stack_0001.oir: [testng] [2024-07-24 01:31:44,776] [pool-1-thread-6] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif: [testng] [2024-07-24 01:31:45,040] [pool-1-thread-5] Initializing /data/qa-16871/Clipboard.tif: [testng] [2024-07-24 01:31:45,860] [pool-1-thread-11] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif: [testng] [2024-07-24 01:31:46,115] [pool-1-thread-9] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir: [testng] [2024-07-24 01:31:50,435] [pool-1-thread-5] Initializing /data/qa-17335/Clipboard-1.tif: [testng] [2024-07-24 01:31:50,950] [pool-1-thread-1] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif: [testng] [2024-07-24 01:31:51,723] [pool-1-thread-11] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir: [testng] [2024-07-24 01:31:52,052] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif: [testng] [2024-07-24 01:31:52,355] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif: [testng] [2024-07-24 01:31:52,433] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif: [testng] [2024-07-24 01:31:53,410] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir: [testng] [2024-07-24 01:31:53,743] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif: [testng] [2024-07-24 01:31:53,795] [pool-1-thread-1] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir: [testng] [2024-07-24 01:31:54,611] [pool-1-thread-6] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif: [testng] [2024-07-24 01:31:55,391] [pool-1-thread-5] Initializing /data/qa-17409/Clipboard.tif: [testng] [2024-07-24 01:31:55,454] [pool-1-thread-11] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif: [testng] [2024-07-24 01:31:55,773] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/zebra shg.oir: [testng] [2024-07-24 01:31:57,983] [pool-1-thread-6] Initializing /data/qa-16881/P10-50 D2.ome.tif: [testng] [2024-07-24 01:31:58,286] [pool-1-thread-5] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir: [testng] [2024-07-24 01:31:58,680] [pool-1-thread-11] Initializing /data/olympus/calcium sparks_XYt.ome.tif: [testng] [2024-07-24 01:31:58,789] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif: [testng] [2024-07-24 01:31:59,821] [pool-1-thread-5] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info: [testng] [2024-07-24 01:32:02,309] [pool-1-thread-6] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info: [testng] [2024-07-24 01:32:04,566] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif: [testng] [2024-07-24 01:32:05,642] [pool-1-thread-11] Initializing /data/qa-17270/alexa488.ome.tif: [testng] [2024-07-24 01:32:05,708] [pool-1-thread-3] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif: [testng] [2024-07-24 01:32:06,920] [pool-1-thread-3] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir: [testng] [2024-07-24 01:32:07,838] [pool-1-thread-11] Initializing /data/qa-16881/P10-50 D2_0019.oir: [testng] [2024-07-24 01:32:08,133] [pool-1-thread-1] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi: [testng] [2024-07-24 01:32:09,781] [pool-1-thread-11] Initializing /data/olympus/40X_4CH_XY.ome.tif: [testng] [2024-07-24 01:32:09,917] [pool-1-thread-1] Initializing /data/olympus/Stitched_XYZ.vsi: [testng] [2024-07-24 01:32:10,549] [pool-1-thread-3] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif: [testng] [2024-07-24 01:32:11,096] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif: [testng] [2024-07-24 01:32:12,311] [pool-1-thread-1] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir: [testng] [2024-07-24 01:32:12,873] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 9858, Failures: 2, Skips: 0 [testng] =============================================== [testng] [testng] The tests failed. BUILD FAILED /bio-formats-build/bioformats/components/test-suite/build.xml:270: if=failedTest Total time: 40 minutes 11 seconds Build step 'Execute shell' marked build as failure Finished: FAILURE