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Started by upstream project "BIOFORMATS-test-repo" build number 131 originally caused by: Started by upstream project "Trigger" build number 148 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins10651734469589777839.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_20558_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:55:55,051 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:55:55,053 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service. [testng] 01:55:55,053 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:55:55,054 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:55:55,055 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:55:55,055 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:55:55,056 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:55:55,056 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:55:55,057 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:55:55,057 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:55:55,058 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:55:55,058 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:55:55,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:55:55,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:55:55,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:55:55,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:55:55,334 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:55:55,334 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:55:55,334 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:55:55,335 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:55:55,335 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration. [testng] 01:55:55,336 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point [testng] 01:55:55,336 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 279 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-24 01:55:55,347] [main] java.version = 17.0.2 [testng] 01:55:55,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:55:55,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:55:55,411 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-24_01-55-55.log] [testng] 01:55:55,413 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-07-24 01:55:55,416] [main] testng.directory = /data [testng] [2024-07-24 01:55:55,416] [main] testng.configDirectory = /config [testng] [2024-07-24 01:55:55,429] [main] testng.multiplier = 1.0 [testng] [2024-07-24 01:55:55,431] [main] testng.in-memory = false [testng] [2024-07-24 01:55:55,431] [main] testng.allow-missing = false [testng] [2024-07-24 01:55:55,431] [main] user.language = en [testng] [2024-07-24 01:55:55,431] [main] user.country = ${user.country} [testng] [2024-07-24 01:55:55,431] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-07-24 02:03:22,154] [main] ---------------------------------------- [testng] [2024-07-24 02:03:22,154] [main] Total files: 7329 [testng] [2024-07-24 02:03:22,155] [main] Scan time: 446.722 s (60 ms/file) [testng] [2024-07-24 02:03:22,155] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-24 02:06:54,505] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] 02:06:54,506 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:06:54,506 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:54,507 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-24_02-06-54.log] [testng] 02:06:54,508 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d038efd - End of configuration. [testng] [2024-07-24 02:06:54,574] [pool-1-thread-12] Initializing /data/qa-16915/m-04-488.tif: [testng] 02:06:54,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:06:54,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:54,576 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-24_02-06-54.log] [testng] 02:06:54,576 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cc09a84 - End of configuration. [testng] [2024-07-24 02:06:54,902] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] 02:06:54,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:06:54,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:54,904 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-24_02-06-54.log] [testng] 02:06:54,904 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39ad48fa - End of configuration. [testng] [2024-07-24 02:06:54,973] [pool-1-thread-11] Used files list does not include base file [testng] [2024-07-24 02:06:54,975] [pool-1-thread-10] Initializing /data/ascb/mt mklp1.tif: [testng] 02:06:54,975 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:06:54,975 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:54,976 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-24_02-06-54.log] [testng] 02:06:54,976 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6cb42a60 - End of configuration. [testng] [2024-07-24 02:06:55,036] [pool-1-thread-9] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] 02:06:55,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:06:55,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:55,037 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-24_02-06-55.log] [testng] 02:06:55,037 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d90038a - End of configuration. [testng] [2024-07-24 02:06:55,104] [pool-1-thread-8] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] 02:06:55,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:06:55,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:55,105 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-24_02-06-55.log] [testng] 02:06:55,106 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7479e8d8 - End of configuration. [testng] [2024-07-24 02:06:55,165] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] 02:06:55,166 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:06:55,166 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:55,166 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-24_02-06-55.log] [testng] 02:06:55,167 |-INFO in ch.qos.logback.core.sift.SiftProcessor@385fc257 - End of configuration. [testng] [2024-07-24 02:06:55,212] [pool-1-thread-7] Used files list does not include base file [testng] [2024-07-24 02:06:55,214] [pool-1-thread-6] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] 02:06:55,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:06:55,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:55,215 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-24_02-06-55.log] [testng] 02:06:55,215 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61640b88 - End of configuration. [testng] [2024-07-24 02:06:55,267] [pool-1-thread-5] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] 02:06:55,268 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:06:55,268 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:55,268 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-24_02-06-55.log] [testng] 02:06:55,269 |-INFO in ch.qos.logback.core.sift.SiftProcessor@99c0c00 - End of configuration. [testng] [2024-07-24 02:06:55,330] [pool-1-thread-4] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] 02:06:55,330 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:06:55,330 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:55,331 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-24_02-06-55.log] [testng] 02:06:55,331 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68ad020c - End of configuration. [testng] [2024-07-24 02:06:55,375] [pool-1-thread-3] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] 02:06:55,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:06:55,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:55,376 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-24_02-06-55.log] [testng] 02:06:55,377 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33676ff2 - End of configuration. [testng] [2024-07-24 02:06:56,111] [pool-1-thread-2] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] 02:06:56,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:06:56,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:56,112 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-24_02-06-56.log] [testng] 02:06:56,113 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16b4118f - End of configuration. [testng] [2024-07-24 02:06:57,025] [pool-1-thread-4] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:06:57,084] [pool-1-thread-1] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:06:57,099] [pool-1-thread-9] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:06:57,232] [pool-1-thread-6] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:06:57,703] [pool-1-thread-5] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-07-24 02:06:57,763] [pool-1-thread-11] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:06:57,819] [pool-1-thread-7] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:06:57,971] [pool-1-thread-8] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-07-24 02:06:58,127] [pool-1-thread-4] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] [2024-07-24 02:06:58,284] [pool-1-thread-6] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-07-24 02:06:58,535] [pool-1-thread-9] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-07-24 02:06:58,575] [pool-1-thread-10] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-07-24 02:06:58,644] [pool-1-thread-1] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] [2024-07-24 02:06:58,930] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-07-24 02:06:58,988] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2024-07-24 02:06:59,155] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] [2024-07-24 02:06:59,268] [pool-1-thread-7] Used files list does not include base file [testng] [2024-07-24 02:06:59,640] [pool-1-thread-10] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:06:59,778] [pool-1-thread-11] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:06:59,824] [pool-1-thread-12] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-07-24 02:06:59,937] [pool-1-thread-4] Initializing /data/jacek/YFP2trans.tif: [testng] [2024-07-24 02:07:00,026] [pool-1-thread-8] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-07-24 02:07:00,137] [pool-1-thread-11] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-07-24 02:07:01,224] [pool-1-thread-6] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:07:01,249] [pool-1-thread-1] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-07-24 02:07:01,376] [pool-1-thread-9] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:07:01,571] [pool-1-thread-10] Initializing /data/josh/EditedMovies/2101to400a.stk: [testng] [2024-07-24 02:07:02,213] [pool-1-thread-7] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:07:02,239] [pool-1-thread-5] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-07-24 02:07:02,643] [pool-1-thread-9] Initializing /data/ascb/mt aim.tif: [testng] [2024-07-24 02:07:02,897] [pool-1-thread-2] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:07:03,064] [pool-1-thread-6] Initializing /data/qa-16887/m-01.tif: [testng] [2024-07-24 02:07:03,648] [pool-1-thread-12] Initializing /data/qa-16915/m-01-488.ome.tif: [testng] [2024-07-24 02:07:03,820] [pool-1-thread-7] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-07-24 02:07:03,920] [pool-1-thread-8] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-07-24 02:07:03,944] [pool-1-thread-8] Used files list does not include base file [testng] [2024-07-24 02:07:04,105] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-07-24 02:07:04,266] [pool-1-thread-9] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-07-24 02:07:05,207] [pool-1-thread-2] Initializing /data/josh/2101to800.stk: [testng] [2024-07-24 02:07:05,989] [pool-1-thread-3] Initializing /data/samples/zserEight.stk: [testng] [2024-07-24 02:07:06,209] [pool-1-thread-8] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:07:06,429] [pool-1-thread-8] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-07-24 02:07:07,337] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-07-24 02:07:07,430] [pool-1-thread-1] Initializing /data/samples/zserSixteen.stk: [testng] [2024-07-24 02:07:08,167] [pool-1-thread-1] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-24 02:07:08,272] [pool-1-thread-7] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-07-24 02:07:08,411] [pool-1-thread-12] Initializing /data/ascb/golgi marker.tif: [testng] [2024-07-24 02:07:08,501] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.tif: [testng] [2024-07-24 02:07:08,640] [pool-1-thread-5] Initializing /data/jae/RGB_s34.tif: [testng] [2024-07-24 02:07:09,092] [pool-1-thread-1] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:07:09,327] [pool-1-thread-3] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-24 02:07:09,907] [pool-1-thread-10] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-07-24 02:07:10,067] [pool-1-thread-6] Initializing /data/josh/2101to400astk.stk: [testng] [2024-07-24 02:07:11,860] [pool-1-thread-1] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2024-07-24 02:07:12,178] [pool-1-thread-12] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment5_w1DUAL 491-561_t1.TIF: [testng] [2024-07-24 02:07:12,297] [pool-1-thread-3] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:07:12,732] [pool-1-thread-5] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] [2024-07-24 02:07:13,080] [pool-1-thread-9] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:07:13,112] [pool-1-thread-4] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-07-24 02:07:13,841] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2024-07-24 02:07:13,928] [pool-1-thread-11] Used files list does not include base file [testng] [2024-07-24 02:07:13,930] [pool-1-thread-1] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2024-07-24 02:07:14,462] [pool-1-thread-10] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] [2024-07-24 02:07:14,656] [pool-1-thread-2] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-07-24 02:07:14,697] [pool-1-thread-2] Used files list does not include base file [testng] [2024-07-24 02:07:14,699] [pool-1-thread-7] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-07-24 02:07:14,780] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2024-07-24 02:07:15,112] [pool-1-thread-2] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:07:15,199] [pool-1-thread-2] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-07-24 02:07:15,410] [pool-1-thread-7] Initializing /data/chris/test2_w2_s1_t1.stk: [testng] [2024-07-24 02:07:15,473] [pool-1-thread-10] Initializing /data/josh/2101to400bstk.stk: [testng] [2024-07-24 02:07:23,153] [pool-1-thread-8] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-07-24 02:07:23,509] [pool-1-thread-11] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:07:23,797] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-07-24 02:07:23,886] [pool-1-thread-2] Used files list does not include base file [testng] [2024-07-24 02:07:23,887] [pool-1-thread-12] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:07:23,909] [pool-1-thread-3] Initializing /data/graham/G_Wright raw.stk: [testng] [2024-07-24 02:07:23,962] [pool-1-thread-7] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-07-24 02:07:24,591] [pool-1-thread-11] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2024-07-24 02:07:24,820] [pool-1-thread-4] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:07:25,066] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-07-24 02:07:25,144] [pool-1-thread-3] Initializing /data/heiko/sample_3x3.stk: [testng] [2024-07-24 02:07:25,619] [pool-1-thread-2] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:07:25,761] [pool-1-thread-11] Initializing /data/qa-16915/m-01.tif: [testng] [2024-07-24 02:07:26,171] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-07-24 02:07:26,685] [pool-1-thread-7] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:07:26,707] [pool-1-thread-12] Initializing /data/steve/Experiment2.stk: [testng] [2024-07-24 02:07:26,799] [pool-1-thread-2] Initializing /data/steve/Experiment2.tif: [testng] [2024-07-24 02:07:27,441] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-07-24 02:07:27,483] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-07-24 02:07:27,662] [pool-1-thread-3] Used files list does not include base file [testng] [2024-07-24 02:07:27,820] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-07-24 02:07:27,915] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-07-24 02:07:27,948] [pool-1-thread-12] Used files list does not include base file [testng] [2024-07-24 02:07:28,354] [pool-1-thread-8] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:07:28,426] [pool-1-thread-5] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:07:28,541] [pool-1-thread-12] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:07:29,171] [pool-1-thread-3] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:07:30,534] [pool-1-thread-4] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] [2024-07-24 02:07:30,559] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-07-24 02:07:30,599] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-24 02:07:30,641] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] [2024-07-24 02:07:30,702] [pool-1-thread-8] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-07-24 02:07:30,738] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2024-07-24 02:07:30,747] [pool-1-thread-3] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] [2024-07-24 02:07:32,702] [pool-1-thread-11] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-07-24 02:07:33,175] [pool-1-thread-1] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] [2024-07-24 02:07:33,509] [pool-1-thread-8] Initializing /data/qa-16915/m-02.tif: [testng] [2024-07-24 02:07:34,084] [pool-1-thread-7] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2024-07-24 02:07:34,192] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-07-24 02:07:34,209] [pool-1-thread-11] Used files list does not include base file [testng] [2024-07-24 02:07:34,211] [pool-1-thread-2] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-07-24 02:07:34,280] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-07-24 02:07:34,470] [pool-1-thread-11] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:07:34,511] [pool-1-thread-4] Initializing /data/tristan/data IJM/mw3_z/MDA_z_MW3(GFP_RFP_GLP)_w3GLP.TIF: [testng] [2024-07-24 02:07:34,689] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-07-24 02:07:34,740] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] [2024-07-24 02:07:34,797] [pool-1-thread-11] Used files list does not include base file [testng] [2024-07-24 02:07:34,798] [pool-1-thread-1] Initializing /data/samples/zser24.stk: [testng] [2024-07-24 02:07:35,170] [pool-1-thread-1] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2024-07-24 02:07:35,415] [pool-1-thread-1] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:07:35,435] [pool-1-thread-4] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:07:35,989] [pool-1-thread-6] Initializing /data/ascb/RNA dye MT 2.tif: [testng] [2024-07-24 02:07:36,030] [pool-1-thread-2] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-07-24 02:07:36,084] [pool-1-thread-1] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-07-24 02:07:36,127] [pool-1-thread-12] Initializing /data/qa-16915/m-02-561.ome.tif: [testng] [2024-07-24 02:07:36,234] [pool-1-thread-9] Initializing /data/samples/diatoms3d.stk: [testng] [2024-07-24 02:07:36,304] [pool-1-thread-7] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-07-24 02:07:36,424] [pool-1-thread-11] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:07:36,726] [pool-1-thread-4] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2024-07-24 02:07:36,878] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-07-24 02:07:36,962] [pool-1-thread-2] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:07:36,989] [pool-1-thread-8] Initializing /data/josh/2101to600f.stk: [testng] [2024-07-24 02:07:39,575] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2024-07-24 02:07:39,650] [pool-1-thread-11] Used files list does not include base file [testng] [2024-07-24 02:07:39,989] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-07-24 02:07:40,048] [pool-1-thread-6] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-07-24 02:07:40,157] [pool-1-thread-1] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-24 02:07:40,486] [pool-1-thread-12] Initializing /data/samples/10xcalib.tif: [testng] [2024-07-24 02:07:40,652] [pool-1-thread-9] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-07-24 02:07:40,839] [pool-1-thread-1] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:07:40,954] [pool-1-thread-11] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:07:41,008] [pool-1-thread-12] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-07-24 02:07:41,052] [pool-1-thread-6] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:07:41,803] [pool-1-thread-1] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] [2024-07-24 02:07:41,921] [pool-1-thread-6] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-07-24 02:07:41,973] [pool-1-thread-4] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2024-07-24 02:07:42,043] [pool-1-thread-2] Initializing /data/alex/Selected FITC.stk: [testng] [2024-07-24 02:07:42,079] [pool-1-thread-11] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-07-24 02:07:42,133] [pool-1-thread-5] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2024-07-24 02:07:42,519] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-24 02:07:42,594] [pool-1-thread-12] Initializing /data/ascb/C1 Stack.stk: [testng] [2024-07-24 02:07:42,765] [pool-1-thread-5] Initializing /data/chris/exp1_w2CSU RED_s3_t003.stk: [testng] [2024-07-24 02:07:42,835] [pool-1-thread-4] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:07:42,930] [pool-1-thread-6] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:07:43,275] [pool-1-thread-4] Initializing /data/samples/zseries.stk: [testng] [2024-07-24 02:07:43,326] [pool-1-thread-9] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:07:43,336] [pool-1-thread-11] Initializing /data/qa-16915/m-04.tif: [testng] [2024-07-24 02:07:43,808] [pool-1-thread-5] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-07-24 02:07:43,875] [pool-1-thread-2] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] [2024-07-24 02:07:43,939] [pool-1-thread-6] Initializing /data/aaron/metamorph.stk: [testng] [2024-07-24 02:07:44,280] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif: [testng] [2024-07-24 02:07:44,333] [pool-1-thread-4] Initializing /data/thomas/t_test2001.tif: [testng] [2024-07-24 02:07:44,619] [pool-1-thread-5] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:07:44,947] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] [2024-07-24 02:07:45,027] [pool-1-thread-6] Initializing /data/josh/2101to600astk.stk: [testng] [2024-07-24 02:07:52,906] [pool-1-thread-4] Initializing /data/david/tl4.tif: [testng] [2024-07-24 02:07:53,407] [pool-1-thread-2] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-07-24 02:07:53,511] [pool-1-thread-5] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-07-24 02:07:53,604] [pool-1-thread-9] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-07-24 02:07:53,663] [pool-1-thread-1] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:07:53,741] [pool-1-thread-7] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:07:54,165] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-24 02:07:54,225] [pool-1-thread-9] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:07:54,515] [pool-1-thread-12] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-07-24 02:07:54,673] [pool-1-thread-11] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-07-24 02:07:54,741] [pool-1-thread-7] Initializing /data/samples/10xcalib.stk: [testng] [2024-07-24 02:07:54,849] [pool-1-thread-9] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2024-07-24 02:07:54,948] [pool-1-thread-12] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:07:54,948] [pool-1-thread-1] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:07:55,206] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-07-24 02:07:55,262] [pool-1-thread-7] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-07-24 02:07:55,527] [pool-1-thread-1] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2024-07-24 02:07:55,627] [pool-1-thread-7] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:07:55,815] [pool-1-thread-1] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:07:55,850] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2024-07-24 02:07:55,969] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2024-07-24 02:07:56,029] [pool-1-thread-7] Used files list does not include base file [testng] [2024-07-24 02:07:56,044] [pool-1-thread-1] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-07-24 02:07:56,226] [pool-1-thread-12] Initializing /data/josh/2101to600e.stk: [testng] [2024-07-24 02:07:56,853] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-07-24 02:07:56,905] [pool-1-thread-9] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-07-24 02:07:57,055] [pool-1-thread-1] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:07:57,087] [pool-1-thread-7] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:07:57,264] [pool-1-thread-5] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:07:57,575] [pool-1-thread-7] Initializing /data/dave/Z Series.stk: [testng] [2024-07-24 02:07:57,643] [pool-1-thread-1] Initializing /data/qa-30870/220209_posit5.tif: [testng] [2024-07-24 02:07:57,855] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-07-24 02:07:57,975] [pool-1-thread-9] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-07-24 02:07:58,198] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-24 02:07:58,361] [pool-1-thread-11] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-07-24 02:07:58,429] [pool-1-thread-4] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-07-24 02:07:58,852] [pool-1-thread-7] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:07:58,857] [pool-1-thread-9] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:07:58,860] [pool-1-thread-3] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2024-07-24 02:07:59,104] [pool-1-thread-1] Initializing /data/sebastien-besson/A._WTChlor.2.nd_[Stage1__Position52_]/A. WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-07-24 02:07:59,475] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2024-07-24 02:07:59,524] [pool-1-thread-7] Used files list does not include base file [testng] [2024-07-24 02:07:59,570] [pool-1-thread-2] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:07:59,663] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-07-24 02:07:59,732] [pool-1-thread-4] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-07-24 02:07:59,926] [pool-1-thread-9] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2024-07-24 02:08:00,310] [pool-1-thread-5] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-07-24 02:08:00,576] [pool-1-thread-9] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:08:00,680] [pool-1-thread-7] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:08:00,962] [pool-1-thread-11] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-07-24 02:08:01,102] [pool-1-thread-12] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-07-24 02:08:01,210] [pool-1-thread-5] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:08:01,210] [pool-1-thread-4] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:08:01,220] [pool-1-thread-9] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-07-24 02:08:01,351] [pool-1-thread-7] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-07-24 02:08:01,490] [pool-1-thread-9] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:08:01,591] [pool-1-thread-7] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-07-24 02:08:01,699] [pool-1-thread-1] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:08:01,703] [pool-1-thread-9] Initializing /data/josh/2101to600b.stk: [testng] [2024-07-24 02:08:02,754] [pool-1-thread-4] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-07-24 02:08:03,055] [pool-1-thread-5] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-07-24 02:08:03,108] [pool-1-thread-2] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-07-24 02:08:03,275] [pool-1-thread-3] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:08:03,380] [pool-1-thread-11] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:08:03,463] [pool-1-thread-7] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:08:03,549] [pool-1-thread-5] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:08:03,776] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-07-24 02:08:03,921] [pool-1-thread-12] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2024-07-24 02:08:03,983] [pool-1-thread-3] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-07-24 02:08:04,106] [pool-1-thread-7] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] [2024-07-24 02:08:04,246] [pool-1-thread-1] Initializing /data/grant/X.STK: [testng] [2024-07-24 02:08:04,331] [pool-1-thread-11] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-07-24 02:08:04,522] [pool-1-thread-3] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:08:04,852] [pool-1-thread-12] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2024-07-24 02:08:05,010] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2024-07-24 02:08:05,067] [pool-1-thread-2] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:08:05,084] [pool-1-thread-1] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:08:05,098] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-07-24 02:08:05,147] [pool-1-thread-3] Used files list does not include base file [testng] [2024-07-24 02:08:05,222] [pool-1-thread-11] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:08:05,249] [pool-1-thread-5] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:08:05,330] [pool-1-thread-5] Initializing /data/thomas/test.tif: [testng] [2024-07-24 02:08:05,608] [pool-1-thread-7] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:08:05,639] [pool-1-thread-8] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-07-24 02:08:05,712] [pool-1-thread-11] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-07-24 02:08:05,820] [pool-1-thread-1] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-24 02:08:06,058] [pool-1-thread-12] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2024-07-24 02:08:06,153] [pool-1-thread-4] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-07-24 02:08:06,192] [pool-1-thread-5] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-07-24 02:08:06,250] [pool-1-thread-11] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:08:06,257] [pool-1-thread-3] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:08:06,422] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2024-07-24 02:08:06,441] [pool-1-thread-1] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:08:06,649] [pool-1-thread-4] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-07-24 02:08:06,932] [pool-1-thread-7] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-07-24 02:08:07,982] [pool-1-thread-2] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-07-24 02:08:07,994] [pool-1-thread-2] Used files list does not include base file [testng] [2024-07-24 02:08:08,027] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-24 02:08:08,091] [pool-1-thread-8] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2024-07-24 02:08:08,151] [pool-1-thread-3] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2024-07-24 02:08:08,180] [pool-1-thread-12] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-07-24 02:08:08,259] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-07-24 02:08:08,312] [pool-1-thread-1] Used files list does not include base file [testng] [2024-07-24 02:08:08,312] [pool-1-thread-2] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:08:08,327] [pool-1-thread-5] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:08:08,440] [pool-1-thread-2] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-07-24 02:08:08,482] [pool-1-thread-3] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:08:08,606] [pool-1-thread-3] Initializing /data/grant/XYZ_Image.STK: [testng] [2024-07-24 02:08:08,767] [pool-1-thread-8] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:08:08,879] [pool-1-thread-4] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:08:08,942] [pool-1-thread-5] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-07-24 02:08:10,029] [pool-1-thread-11] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:08:10,202] [pool-1-thread-2] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:08:10,232] [pool-1-thread-1] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:08:10,277] [pool-1-thread-12] Initializing /data/cumol-test-series/23.001: [testng] [2024-07-24 02:08:10,444] [pool-1-thread-3] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:08:10,531] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-07-24 02:08:10,587] [pool-1-thread-8] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-07-24 02:08:10,652] [pool-1-thread-11] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-07-24 02:08:11,571] [pool-1-thread-1] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-07-24 02:08:11,667] [pool-1-thread-2] Initializing /data/jerome/deconv.STK: [testng] [2024-07-24 02:08:11,749] [pool-1-thread-3] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2024-07-24 02:08:13,937] [pool-1-thread-12] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-07-24 02:08:14,099] [pool-1-thread-2] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2024-07-24 02:08:16,270] [pool-1-thread-4] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] [2024-07-24 02:08:44,105] [pool-1-thread-4] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:08:56,554] [pool-1-thread-2] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:16:57,272] [pool-1-thread-5] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 82, Skips: 0 [testng] =============================================== [testng] [testng] The tests failed. BUILD FAILED /bio-formats-build/bioformats/components/test-suite/build.xml:270: if=failedTest Total time: 21 minutes 18 seconds Build step 'Execute shell' marked build as failure Finished: FAILURE